Wall clock time and date at job start Mon Mar 30 2020 01:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35964 * 116.99885 * 2 1 4 4 C 1.38097 * 119.96924 * 359.97438 * 3 2 1 5 5 C 1.40033 * 119.93745 * 180.02562 * 4 3 2 6 6 C 1.46863 * 120.05790 * 179.72337 * 5 4 3 7 7 C 1.50709 * 119.99661 * 174.47148 * 6 5 4 8 8 O 1.21296 * 120.00168 * 354.47314 * 6 5 4 9 9 C 1.40031 * 119.87544 * 0.02562 * 5 4 3 10 10 C 1.38090 * 119.93820 * 0.02562 * 9 5 4 11 11 O 1.35963 * 119.97073 * 179.97438 * 10 9 5 12 12 C 1.42905 * 116.99744 * 359.95898 * 11 10 9 13 13 C 1.39510 * 120.06578 * 359.96095 * 10 9 5 14 14 O 1.35617 * 119.94206 * 180.02562 * 13 10 9 15 15 C 1.34758 * 117.00030 * 270.01854 * 14 13 10 16 16 H 1.08001 * 119.99718 * 359.97438 * 15 14 13 17 17 C 1.38711 * 120.00136 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00130 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99966 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47042 * 89.99755 * 19 17 15 21 21 H 1.48497 * 109.47137 * 209.99925 * 19 17 15 22 22 H 1.48501 * 109.47148 * 330.00023 * 19 17 15 23 23 H 1.09001 * 109.47315 * 300.00345 * 1 2 3 24 24 H 1.09004 * 109.46669 * 60.00651 * 1 2 3 25 25 H 1.09001 * 109.46857 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.02732 * 359.97438 * 4 3 2 27 27 H 1.08996 * 109.46847 * 5.07660 * 7 6 5 28 28 H 1.08996 * 109.47248 * 125.07393 * 7 6 5 29 29 H 1.09002 * 109.46747 * 245.07959 * 7 6 5 30 30 H 1.07997 * 120.02809 * 179.97438 * 9 5 4 31 31 H 1.08999 * 109.46933 * 179.97438 * 12 11 10 32 32 H 1.09003 * 109.47135 * 299.99580 * 12 11 10 33 33 H 1.09005 * 109.47048 * 59.99812 * 12 11 10 34 34 H 0.97004 * 120.00618 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2934 2.3692 -0.0005 5 6 1.9298 3.6166 -0.0011 6 6 1.1319 4.8495 -0.0078 7 6 1.8126 6.1883 0.1174 8 8 -0.0750 4.7903 -0.1140 9 6 3.3284 3.6861 -0.0016 10 6 4.0761 2.5251 -0.0022 11 8 5.4341 2.5918 -0.0032 12 6 6.0196 3.8954 -0.0046 13 6 3.4395 1.2838 -0.0013 14 8 4.1763 0.1452 -0.0013 15 6 4.5083 -0.3687 -1.2020 16 1 4.1881 0.1248 -2.1078 17 6 5.2612 -1.5314 -1.2747 18 7 5.6516 -2.1320 -0.1717 19 14 5.7221 -2.2433 -2.9391 20 1 7.0193 -1.6708 -3.3803 21 1 5.8439 -3.7192 -2.8296 22 1 4.6693 -1.9057 -3.9305 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2150 2.3126 -0.0014 27 1 2.8935 6.0481 0.1115 28 1 1.5239 6.8224 -0.7208 29 1 1.5127 6.6623 1.0520 30 1 3.8218 4.6468 -0.0025 31 1 7.1059 3.8058 -0.0049 32 1 5.6991 4.4367 -0.8948 33 1 5.7003 4.4381 0.8852 34 1 6.1785 -2.9449 -0.2224 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842661312.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:21 Heat of formation + Delta-G solvation = -98.604540 kcal Electronic energy + Delta-G solvation = -20374.512918 eV Core-core repulsion = 17047.293146 eV Total energy + Delta-G solvation = -3327.219771 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.34842 -38.95907 -38.47646 -36.73246 -35.52155 -31.98476 -31.01849 -29.35559 -28.68913 -27.37392 -26.37919 -24.90457 -22.85016 -21.41448 -19.96923 -18.29112 -17.56415 -16.62788 -16.34443 -16.06747 -15.56552 -15.43636 -15.05417 -14.83806 -14.59677 -14.47753 -14.07520 -13.34446 -13.26063 -12.81102 -12.43023 -12.30545 -11.90181 -11.78023 -11.39908 -11.31854 -11.13839 -11.10306 -10.97786 -10.32046 -10.29645 -10.14438 -9.75810 -9.54662 -8.14144 -7.82380 -7.50020 -5.98281 -3.66438 0.89127 1.80527 2.62139 3.31056 3.32980 3.35758 3.37887 4.02161 4.08735 4.17140 4.36598 4.91678 5.01474 5.20680 5.24307 5.31281 5.31840 5.35288 5.38613 5.47945 5.49189 5.55669 5.63173 5.71311 5.78660 5.82715 6.24798 6.46848 6.50957 6.70253 6.74443 7.44775 7.57807 7.84521 7.87999 8.37380 9.43763 10.10817 11.21274 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.019821 B = 0.006748 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.325963 B = 4148.417107 C = 5098.147046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.284 6.284 3 C 0.114 3.886 4 C -0.173 4.173 5 C -0.139 4.139 6 C 0.402 3.598 7 C -0.200 4.200 8 O -0.470 6.470 9 C -0.189 4.189 10 C 0.115 3.885 11 O -0.283 6.283 12 C 0.024 3.976 13 C 0.121 3.879 14 O -0.212 6.212 15 C -0.356 4.356 16 H 0.066 0.934 17 C 0.032 3.968 18 N -0.882 5.882 19 Si 0.930 3.070 20 H -0.279 1.279 21 H -0.282 1.282 22 H -0.274 1.274 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.098 0.902 26 H 0.135 0.865 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.136 0.864 31 H 0.098 0.902 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.121 13.585 0.072 14.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.196 6.196 3 C 0.068 3.932 4 C -0.192 4.192 5 C -0.140 4.140 6 C 0.282 3.718 7 C -0.257 4.257 8 O -0.347 6.347 9 C -0.208 4.208 10 C 0.068 3.932 11 O -0.196 6.196 12 C -0.071 4.071 13 C 0.073 3.927 14 O -0.124 6.124 15 C -0.433 4.433 16 H 0.084 0.916 17 C -0.168 4.168 18 N -0.523 5.523 19 Si 0.756 3.244 20 H -0.205 1.205 21 H -0.207 1.207 22 H -0.199 1.199 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.116 0.884 26 H 0.153 0.847 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.153 0.847 31 H 0.116 0.884 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.346 12.928 0.230 13.992 hybrid contribution 0.032 0.159 -0.904 0.918 sum -5.314 13.087 -0.674 14.141 Atomic orbital electron populations 1.23056 0.79636 1.03644 1.00736 1.86356 1.19888 1.25243 1.88121 1.19243 0.91465 0.84628 0.97904 1.21193 1.00142 0.90829 1.07036 1.19739 0.93255 0.93892 1.07105 1.22336 0.88305 0.90526 0.70657 1.22222 1.02824 0.96151 1.04519 1.90504 1.16753 1.89969 1.37476 1.21245 0.93227 0.97310 1.09007 1.19204 0.83265 0.92772 0.97962 1.86377 1.16119 1.28891 1.88179 1.23056 0.99352 0.84246 1.00478 1.17939 0.87189 0.87603 0.99936 1.83894 1.66695 1.32742 1.29089 1.20845 1.33306 1.07811 0.81345 0.91574 1.24959 0.97499 0.96111 0.98189 1.70009 1.37263 1.18907 1.26135 0.85898 0.78755 0.78327 0.81391 1.20510 1.20718 1.19891 0.93116 0.93080 0.88361 0.84688 0.89843 0.89108 0.88845 0.84698 0.88393 0.93154 0.93166 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 101.05 0.99 1.37 16 2 O -0.28 -6.18 10.27 -34.31 -0.35 -6.53 16 3 C 0.11 2.48 6.70 -39.16 -0.26 2.21 16 4 C -0.17 -3.14 8.57 -38.96 -0.33 -3.48 16 5 C -0.14 -2.28 5.87 -105.06 -0.62 -2.89 16 6 C 0.40 5.69 7.20 -30.82 -0.22 5.47 16 7 C -0.20 -1.87 10.19 36.01 0.37 -1.51 16 8 O -0.47 -7.90 17.09 5.54 0.09 -7.80 16 9 C -0.19 -3.03 8.42 -38.96 -0.33 -3.36 16 10 C 0.11 2.36 6.69 -39.16 -0.26 2.10 16 11 O -0.28 -5.80 10.27 -34.31 -0.35 -6.15 16 12 C 0.02 0.32 9.81 101.05 0.99 1.31 16 13 C 0.12 2.96 5.62 -38.63 -0.22 2.75 16 14 O -0.21 -6.33 9.22 -24.68 -0.23 -6.56 16 15 C -0.36 -10.65 9.82 30.91 0.30 -10.35 16 16 H 0.07 1.90 7.76 -52.49 -0.41 1.49 16 17 C 0.03 0.94 5.49 -17.51 -0.10 0.84 16 18 N -0.88 -27.74 13.67 55.48 0.76 -26.98 16 19 Si 0.93 22.27 29.55 -169.99 -5.02 17.25 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H 0.05 0.68 7.66 -51.93 -0.40 0.28 16 24 H 0.05 0.70 7.65 -51.93 -0.40 0.30 16 25 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 26 H 0.14 2.23 5.86 -52.49 -0.31 1.93 16 27 H 0.08 0.66 5.61 -51.93 -0.29 0.37 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.14 1.61 4.15 -52.49 -0.22 1.39 16 31 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 33 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 300.48 15.07 4.53 4.53 Total: -1.00 -36.64 300.48 -3.90 -40.54 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -3.64 Total: -2.76 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 0.31 Total: -5.53 kcal Atomic # 7 Polarization: -27.74 SS G_CDS: 0.76 Total: -26.98 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.84 Total: -27.04 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -36.64 -3.90 -40.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842661312.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.069 kcal (2) G-P(sol) polarization free energy of solvation -36.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds