Wall clock time and date at job start Mon Mar 30 2020 01:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35646 * 117.00265 * 2 1 4 4 C 1.38563 * 120.12017 * 359.97438 * 3 2 1 5 5 C 1.38226 * 120.24126 * 179.97438 * 4 3 2 6 6 C 1.38271 * 120.49947 * 0.02562 * 5 4 3 7 7 C 1.38515 * 120.24392 * 359.96037 * 6 5 4 8 8 O 1.35651 * 120.12559 * 179.74503 * 7 6 5 9 9 C 1.40291 * 120.12820 * 179.97438 * 3 2 1 10 10 C 1.47084 * 120.24278 * 0.04135 * 9 3 2 11 11 O 1.21541 * 120.00154 * 269.95628 * 10 9 3 12 12 O 1.34787 * 119.99915 * 89.95966 * 10 9 3 13 13 C 1.45201 * 116.99840 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46917 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47142 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00233 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00395 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99511 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00462 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46837 * 60.00268 * 19 17 15 21 21 H 1.48502 * 109.47248 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47049 * 300.00497 * 19 17 15 23 23 H 1.08995 * 109.46917 * 300.00294 * 1 2 3 24 24 H 1.08994 * 109.46846 * 60.00278 * 1 2 3 25 25 H 1.08999 * 109.46734 * 179.97438 * 1 2 3 26 26 H 1.07993 * 119.87826 * 359.95408 * 4 3 2 27 27 H 1.08003 * 119.75330 * 179.97438 * 5 4 3 28 28 H 1.08006 * 119.88049 * 179.97438 * 6 5 4 29 29 H 0.96704 * 113.99708 * 90.00363 * 8 7 6 30 30 H 1.09005 * 109.46830 * 299.99213 * 13 12 10 31 31 H 1.08995 * 109.47501 * 59.99612 * 13 12 10 32 32 H 1.08997 * 109.46834 * 299.99524 * 14 13 12 33 33 H 1.08995 * 109.47402 * 59.99489 * 14 13 12 34 34 H 0.97003 * 119.99835 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2927 2.3723 -0.0005 5 6 1.9177 3.6052 0.0000 6 6 3.2977 3.6924 0.0005 7 6 4.0695 2.5422 0.0014 8 8 5.4231 2.6306 -0.0033 9 6 3.4457 1.2851 0.0005 10 6 4.2547 0.0567 0.0002 11 8 4.5893 -0.4509 1.0526 12 8 4.6251 -0.5060 -1.1673 13 6 5.4222 -1.7173 -1.0916 14 6 5.7441 -2.2051 -2.5056 15 6 6.5719 -3.4619 -2.4271 16 1 6.8418 -3.8716 -1.4650 17 6 6.9848 -4.0889 -3.5836 18 7 6.6565 -3.5897 -4.7553 19 14 8.0115 -5.6464 -3.4863 20 1 7.2512 -6.6959 -2.7611 21 1 8.3238 -6.1199 -4.8587 22 1 9.2759 -5.3613 -2.7617 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2143 2.3158 -0.0017 27 1 1.3237 4.5072 -0.0008 28 1 3.7756 4.6610 0.0005 29 1 5.8184 2.6588 0.8788 30 1 6.3504 -1.5087 -0.5595 31 1 4.8635 -2.4873 -0.5596 32 1 4.8162 -2.4135 -3.0381 33 1 6.3030 -1.4350 -3.0372 34 1 6.9473 -4.0306 -5.5689 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845182570.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:25 Heat of formation + Delta-G solvation = -143.619288 kcal Electronic energy + Delta-G solvation = -19667.191717 eV Core-core repulsion = 16338.019960 eV Total energy + Delta-G solvation = -3329.171757 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.82412 -39.32115 -38.59065 -36.21693 -35.89847 -33.27634 -31.53108 -30.06799 -29.66990 -27.58148 -25.34627 -23.95327 -22.39379 -21.22343 -20.54241 -19.00593 -17.75023 -17.10669 -16.88727 -16.50531 -16.07358 -15.80041 -15.40773 -15.08145 -14.85004 -14.43385 -14.37558 -13.11295 -12.92293 -12.73676 -12.48860 -12.30498 -12.28263 -11.62668 -11.27004 -11.17042 -11.10063 -10.96405 -10.66835 -10.66339 -10.22071 -9.56076 -9.54764 -9.24915 -9.03339 -8.50240 -8.38264 -6.04409 -4.08669 0.77529 1.07062 2.52855 2.89569 3.11618 3.33986 3.37252 3.39192 3.45794 4.03413 4.42890 4.52141 4.73894 4.87443 4.92113 4.94390 5.14614 5.17662 5.29825 5.31756 5.51529 5.85674 5.97627 6.07443 6.18215 6.18664 6.23888 6.71765 6.98975 7.08316 7.42517 7.62722 7.70855 7.92719 8.23809 8.32589 8.96618 9.55067 11.07161 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.026637 B = 0.004222 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.929150 B = 6630.703561 C = 7100.401463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.184 3.816 4 C -0.222 4.222 5 C -0.046 4.046 6 C -0.185 4.185 7 C 0.188 3.812 8 O -0.486 6.486 9 C -0.164 4.164 10 C 0.525 3.475 11 O -0.510 6.510 12 O -0.343 6.343 13 C 0.074 3.926 14 C 0.025 3.975 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.900 3.100 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.139 0.861 29 H 0.400 0.600 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.028 0.972 33 H 0.029 0.971 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.814 15.320 10.550 22.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.218 6.218 3 C 0.137 3.863 4 C -0.240 4.240 5 C -0.064 4.064 6 C -0.204 4.204 7 C 0.142 3.858 8 O -0.298 6.298 9 C -0.167 4.167 10 C 0.368 3.632 11 O -0.400 6.400 12 O -0.259 6.259 13 C 0.002 3.998 14 C -0.012 4.012 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.123 0.877 26 H 0.156 0.844 27 H 0.153 0.847 28 H 0.157 0.843 29 H 0.258 0.742 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.646 14.876 10.026 21.949 hybrid contribution 0.450 -0.825 0.510 1.069 sum -12.196 14.051 10.535 21.382 Atomic orbital electron populations 1.23174 0.77440 1.04692 1.01496 1.86136 1.22149 1.26127 1.87384 1.18678 0.89875 0.85149 0.92626 1.21164 1.00420 0.91677 1.10781 1.20908 0.93950 0.97207 0.94376 1.21230 0.93907 0.98022 1.07215 1.18064 0.83393 0.89579 0.94751 1.84778 1.15348 1.95666 1.33987 1.18895 0.90804 0.92617 1.14362 1.20491 0.76839 0.83001 0.82879 1.90816 1.53327 1.62740 1.33125 1.86701 1.64719 1.42108 1.32355 1.23672 0.92214 0.80871 1.03045 1.19164 0.97682 0.96128 0.88239 1.20949 1.33464 1.09042 0.92916 0.92300 1.24983 0.96158 0.97781 0.95219 1.69977 1.45558 1.39992 0.97352 0.86529 0.80620 0.83011 0.77101 1.20086 1.21142 1.20071 0.92315 0.92084 0.87683 0.84386 0.84689 0.84332 0.74220 0.92269 0.92284 0.95357 0.95284 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.49 9.95 -18.64 -0.19 -4.68 16 3 C 0.18 2.63 6.70 -38.69 -0.26 2.37 16 4 C -0.22 -2.26 9.02 -39.47 -0.36 -2.61 16 5 C -0.05 -0.41 10.02 -39.57 -0.40 -0.81 16 6 C -0.19 -1.91 9.97 -39.47 -0.39 -2.30 16 7 C 0.19 2.60 6.72 -38.69 -0.26 2.34 16 8 O -0.49 -6.57 12.95 -18.65 -0.24 -6.81 16 9 C -0.16 -2.74 5.77 -104.75 -0.60 -3.35 16 10 C 0.53 10.89 6.46 34.32 0.22 11.11 16 11 O -0.51 -11.36 16.90 -19.30 -0.33 -11.69 16 12 O -0.34 -7.95 10.23 -40.73 -0.42 -8.37 16 13 C 0.07 1.81 5.42 37.16 0.20 2.01 16 14 C 0.02 0.69 5.35 -27.88 -0.15 0.55 16 15 C -0.53 -15.33 9.11 -34.44 -0.31 -15.64 16 16 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 19 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 23 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 24 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 25 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.14 0.97 6.28 -52.49 -0.33 0.64 16 27 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 28 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 29 H 0.40 3.49 9.06 45.56 0.41 3.90 16 30 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 307.51 15.07 4.63 4.63 Total: -1.00 -36.07 307.51 -5.45 -41.51 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -3.21 Total: -1.66 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -1.42 Total: -3.44 kcal Atomic # 7 Polarization: -27.11 SS G_CDS: 0.74 Total: -26.37 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -1.17 Total: -31.55 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -36.07 -5.45 -41.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845182570.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.104 kcal (2) G-P(sol) polarization free energy of solvation -36.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds