Wall clock time and date at job start Mon Mar 30 2020 01:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35905 * 116.99782 * 2 1 4 4 C 1.38759 * 120.05429 * 0.02621 * 3 2 1 5 5 C 1.38123 * 119.94188 * 179.97438 * 4 3 2 6 6 C 1.38282 * 120.05573 * 359.74490 * 5 4 3 7 7 C 1.38246 * 120.11144 * 0.50744 * 6 5 4 8 8 C 1.50703 * 119.97118 * 179.76976 * 7 6 5 9 9 H 1.09000 * 109.47090 * 204.72911 * 8 7 6 10 10 O 1.42899 * 109.46995 * 324.72256 * 8 7 6 11 11 C 1.42895 * 114.00386 * 270.00151 * 10 8 7 12 12 C 1.50693 * 109.47518 * 84.72306 * 8 7 6 13 13 O 1.21213 * 120.00493 * 245.00300 * 12 8 7 14 14 O 1.34310 * 119.99805 * 64.72555 * 12 8 7 15 15 C 1.34922 * 117.00349 * 180.27868 * 14 12 8 16 16 H 1.08003 * 119.99659 * 359.97438 * 15 14 12 17 17 C 1.38755 * 120.00272 * 179.97438 * 15 14 12 18 18 N 1.31441 * 120.00098 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99825 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47079 * 60.00337 * 19 17 15 21 21 H 1.48508 * 109.46903 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47336 * 300.00039 * 19 17 15 23 23 C 1.38165 * 120.05600 * 359.49132 * 7 6 5 24 24 H 1.08998 * 109.47149 * 59.99807 * 1 2 3 25 25 H 1.09000 * 109.46627 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47325 * 299.99418 * 1 2 3 27 27 H 1.08000 * 120.02452 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.96823 * 180.02562 * 5 4 3 29 29 H 1.07999 * 119.94726 * 180.27752 * 6 5 4 30 30 H 1.08999 * 109.47207 * 300.00137 * 11 10 8 31 31 H 1.09001 * 109.47290 * 59.99867 * 11 10 8 32 32 H 1.09002 * 109.47600 * 180.02562 * 11 10 8 33 33 H 0.97002 * 120.00099 * 179.97438 * 18 17 15 34 34 H 1.07999 * 120.02602 * 180.27516 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3754 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3017 3.6759 0.0064 7 6 4.0558 2.5173 0.0006 8 6 5.5607 2.5984 0.0012 9 1 5.9738 1.6881 -0.4333 10 8 5.9771 3.7263 -0.7712 11 6 6.1872 3.4377 -2.1548 12 6 6.0552 2.7488 1.4167 13 8 6.6214 3.7653 1.7562 14 8 5.8635 1.7586 2.3037 15 6 6.3255 1.9594 3.5553 16 1 6.8237 2.8846 3.8050 17 6 6.1605 0.9775 4.5217 18 7 5.5546 -0.1486 4.2177 19 14 6.8008 1.2554 6.2544 20 1 6.1410 2.4498 6.8403 21 1 6.5017 0.0644 7.0896 22 1 8.2692 1.4726 6.2107 23 6 3.4310 1.2849 0.0001 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 0.2127 2.3203 0.0006 28 1 1.3337 4.5114 0.0019 29 1 3.7920 4.6382 0.0113 30 1 6.9612 2.6766 -2.2538 31 1 5.2595 3.0716 -2.5946 32 1 6.5017 4.3445 -2.6715 33 1 5.4396 -0.8352 4.8932 34 1 4.0206 0.3801 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850223631.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:08 Heat of formation + Delta-G solvation = -150.076154 kcal Electronic energy + Delta-G solvation = -20214.769520 eV Core-core repulsion = 16885.317772 eV Total energy + Delta-G solvation = -3329.451748 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.58145 -40.81421 -39.33700 -37.95211 -37.06390 -34.35527 -33.05331 -31.39384 -29.22795 -28.08166 -27.64623 -26.45153 -23.64341 -23.07409 -21.74743 -19.92907 -19.26070 -18.53595 -17.78019 -17.12902 -17.08917 -16.76828 -16.60338 -16.52959 -16.13278 -15.96044 -15.18410 -14.81595 -14.47652 -14.18207 -13.81987 -13.66425 -13.40356 -13.17578 -12.83532 -12.71534 -12.38193 -12.36910 -12.16321 -12.04752 -11.98605 -11.85285 -11.26304 -10.80965 -10.71183 -9.89216 -9.19016 -8.55037 -6.35847 0.17949 0.45174 1.26154 1.31679 1.47852 1.57344 1.85185 2.28959 2.42705 2.66882 2.95076 3.32740 3.51467 3.78606 3.93515 4.12190 4.31870 4.35634 4.42834 4.49532 4.51371 4.54298 4.59218 4.61770 4.74153 4.80071 4.96253 5.12362 5.26243 5.39991 5.51251 5.72639 5.79376 6.00476 6.46361 6.58361 6.88306 7.70018 8.64479 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.007124 C = 0.005325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.376360 B = 3929.657168 C = 5257.285872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.339 6.339 3 C 0.116 3.884 4 C -0.196 4.196 5 C -0.080 4.080 6 C -0.142 4.142 7 C -0.082 4.082 8 C 0.163 3.837 9 H 0.112 0.888 10 O -0.375 6.375 11 C 0.021 3.979 12 C 0.398 3.602 13 O -0.567 6.567 14 O -0.229 6.229 15 C -0.425 4.425 16 H 0.081 0.919 17 C 0.000 4.000 18 N -0.896 5.896 19 Si 1.017 2.983 20 H -0.262 1.262 21 H -0.257 1.257 22 H -0.260 1.260 23 C -0.144 4.144 24 H 0.075 0.925 25 H 0.118 0.882 26 H 0.061 0.939 27 H 0.163 0.837 28 H 0.161 0.839 29 H 0.124 0.876 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.114 0.886 33 H 0.280 0.720 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.562 1.561 -11.266 15.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.071 3.929 4 C -0.214 4.214 5 C -0.097 4.097 6 C -0.160 4.160 7 C -0.083 4.083 8 C 0.104 3.896 9 H 0.129 0.871 10 O -0.294 6.294 11 C -0.075 4.075 12 C 0.245 3.755 13 O -0.464 6.464 14 O -0.137 6.137 15 C -0.500 4.500 16 H 0.098 0.902 17 C -0.201 4.201 18 N -0.532 5.532 19 Si 0.835 3.165 20 H -0.187 1.187 21 H -0.181 1.181 22 H -0.185 1.185 23 C -0.163 4.163 24 H 0.093 0.907 25 H 0.136 0.864 26 H 0.080 0.920 27 H 0.180 0.820 28 H 0.179 0.821 29 H 0.142 0.858 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.089 0.911 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.384 1.583 -11.016 15.221 hybrid contribution 0.402 -0.087 0.639 0.760 sum -9.982 1.496 -10.377 14.477 Atomic orbital electron populations 1.23385 0.76167 1.05659 1.02467 1.86070 1.23818 1.26668 1.88713 1.18989 0.91698 0.85387 0.96811 1.21594 1.01443 0.91372 1.07035 1.21256 0.93398 0.98520 0.96572 1.21036 0.94823 0.97723 1.02426 1.19676 0.93526 0.93903 1.01172 1.19862 0.91435 0.91782 0.86557 0.87066 1.87963 1.88039 1.31610 1.21787 1.23193 1.01044 1.03793 0.79439 1.23749 0.79905 0.82574 0.89295 1.90521 1.43957 1.31438 1.80459 1.83884 1.67897 1.41165 1.20753 1.21410 1.39968 1.04949 0.83715 0.90165 1.26536 0.95840 0.93688 1.03999 1.70081 1.39633 1.06622 1.36880 0.84709 0.79072 0.78852 0.73855 1.18693 1.18075 1.18453 1.20256 0.92872 0.97545 1.05626 0.90675 0.86408 0.92046 0.81968 0.82135 0.85798 0.92704 0.92405 0.86798 0.91100 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.34 -10.33 10.50 -92.48 -0.97 -11.30 16 3 C 0.12 3.84 6.69 22.51 0.15 3.99 16 4 C -0.20 -5.24 9.04 22.37 0.20 -5.04 16 5 C -0.08 -2.19 10.04 22.25 0.22 -1.96 16 6 C -0.14 -4.91 9.35 22.28 0.21 -4.71 16 7 C -0.08 -3.19 4.93 -19.88 -0.10 -3.28 16 8 C 0.16 6.83 2.84 29.10 0.08 6.91 16 9 H 0.11 4.15 7.69 -2.39 -0.02 4.13 16 10 O -0.38 -14.23 9.04 -129.98 -1.17 -15.40 16 11 C 0.02 0.52 10.81 113.37 1.23 1.75 16 12 C 0.40 21.88 7.22 71.23 0.51 22.39 16 13 O -0.57 -34.12 15.74 27.19 0.43 -33.69 16 14 O -0.23 -14.12 9.73 14.85 0.14 -13.98 16 15 C -0.42 -26.77 9.65 67.94 0.66 -26.11 16 16 H 0.08 5.14 6.86 -2.91 -0.02 5.12 16 17 C 0.00 0.02 5.49 84.87 0.47 0.49 16 18 N -0.90 -53.85 13.67 21.62 0.30 -53.55 16 19 Si 1.02 44.41 29.55 68.60 2.03 46.44 16 20 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 22 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 23 C -0.14 -5.50 9.62 22.36 0.22 -5.29 16 24 H 0.07 1.03 7.66 -2.39 -0.02 1.02 16 25 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.06 1.05 7.66 -2.39 -0.02 1.03 16 27 H 0.16 3.02 6.30 -2.91 -0.02 3.00 16 28 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 29 H 0.12 4.35 7.63 -2.91 -0.02 4.33 16 30 H 0.05 1.26 8.08 -2.39 -0.02 1.24 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -80.45 305.77 6.82 -73.63 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 1.11 Total: 17.29 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 4.96 Total: -9.44 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: 0.30 Total: -53.55 kcal Atomic # 8 Polarization: -72.79 SS G_CDS: -1.57 Total: -74.37 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -80.45 6.82 -73.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850223631.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.442 kcal (2) G-P(sol) polarization free energy of solvation -80.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds