Wall clock time and date at job start Mon Mar 30 2020 00:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33642 * 122.74848 * 2 1 4 4 S 1.76192 * 107.92206 * 180.02562 * 3 2 1 5 5 C 1.70976 * 90.28355 * 0.02562 * 4 3 2 6 6 C 1.50706 * 124.91309 * 179.97438 * 5 4 3 7 7 H 1.09000 * 110.88222 * 183.90559 * 6 5 4 8 8 C 1.55156 * 111.00289 * 60.02662 * 6 5 4 9 9 C 1.54326 * 102.94203 * 206.37924 * 8 6 5 10 10 N 1.47023 * 107.26903 * 22.19951 * 9 8 6 11 11 C 1.34774 * 125.64707 * 181.02134 * 10 9 8 12 12 O 1.21687 * 120.00125 * 180.02562 * 11 10 9 13 13 C 1.46376 * 120.00031 * 0.02562 * 11 10 9 14 14 H 1.07993 * 119.99827 * 6.16312 * 13 11 10 15 15 C 1.40050 * 119.99764 * 186.16733 * 13 11 10 16 16 N 1.30674 * 120.00202 * 353.86817 * 15 13 11 17 17 Si 1.86793 * 119.99770 * 173.86822 * 15 13 11 18 18 H 1.48504 * 109.47680 * 275.00847 * 17 15 13 19 19 H 1.48500 * 109.47566 * 35.01016 * 17 15 13 20 20 H 1.48504 * 109.47010 * 155.01062 * 17 15 13 21 21 C 1.47423 * 108.70217 * 1.27872 * 10 9 8 22 22 N 1.29017 * 110.16705 * 0.24305 * 5 4 3 23 23 H 1.09006 * 109.47191 * 89.97250 * 1 2 3 24 24 H 1.09000 * 109.46805 * 209.97034 * 1 2 3 25 25 H 1.09004 * 109.47047 * 329.97646 * 1 2 3 26 26 H 1.08000 * 126.03286 * 0.03944 * 3 2 1 27 27 H 1.09001 * 110.71883 * 88.01960 * 8 6 5 28 28 H 1.08996 * 110.72607 * 324.74673 * 8 6 5 29 29 H 1.08997 * 109.88806 * 262.77522 * 9 8 6 30 30 H 1.09004 * 109.87924 * 141.60818 * 9 8 6 31 31 H 0.96994 * 119.99991 * 179.97438 * 16 15 13 32 32 H 1.09009 * 110.36564 * 94.48845 * 21 10 9 33 33 H 1.08998 * 110.36999 * 216.80699 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 -0.0007 5 6 3.5039 -0.9818 -0.0018 6 6 4.4836 -2.1271 -0.0033 7 1 3.9640 -3.0827 -0.0731 8 6 5.3958 -2.0802 1.2508 9 6 6.6728 -2.8057 0.7767 10 7 6.6986 -2.7291 -0.6913 11 6 7.6454 -3.2617 -1.4891 12 8 7.5649 -3.1356 -2.6967 13 6 8.7704 -3.9920 -0.9028 14 1 8.7912 -4.1902 0.1585 15 6 9.8198 -4.4335 -1.7184 16 7 9.7395 -4.3005 -3.0159 17 14 11.3344 -5.2125 -0.9515 18 1 12.2870 -4.1480 -0.5454 19 1 10.9352 -6.0010 0.2419 20 1 11.9855 -6.1080 -1.9412 21 6 5.5207 -1.9679 -1.1458 22 7 2.2200 -1.1083 -0.0066 23 1 -0.3634 0.0005 -1.0277 24 1 -0.3633 -0.8903 0.5134 25 1 -0.3633 0.8898 0.5142 26 1 1.8391 2.1308 0.0006 27 1 4.9356 -2.6136 2.0826 28 1 5.6180 -1.0498 1.5279 29 1 6.6461 -3.8483 1.0932 30 1 7.5535 -2.3133 1.1890 31 1 10.4664 -4.6059 -3.5807 32 1 5.7780 -0.9177 -1.2842 33 1 5.1312 -2.3892 -2.0726 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874498472.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:58 Heat of formation + Delta-G solvation = -19.970634 kcal Electronic energy + Delta-G solvation = -17453.829982 eV Core-core repulsion = 14605.065655 eV Total energy + Delta-G solvation = -2848.764327 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.04789 -40.08076 -37.80559 -34.68204 -33.83037 -31.68010 -30.16132 -28.63246 -28.30594 -25.58880 -23.78860 -21.92841 -21.19698 -20.63396 -18.84908 -18.37793 -17.64108 -17.21650 -16.20329 -15.89090 -15.62312 -15.44869 -14.85842 -14.55659 -14.25218 -14.01282 -13.80303 -13.56851 -13.33558 -13.22609 -13.01671 -12.71676 -12.65953 -12.33779 -12.25900 -12.24930 -12.00571 -11.76109 -10.93691 -10.67647 -10.39347 -9.94554 -9.62097 -9.16873 -8.32553 -6.87150 -0.31450 0.38065 0.80844 1.40667 1.42668 1.57532 1.75145 2.22413 2.41759 2.64361 3.10944 3.54077 3.56692 3.59803 3.96388 4.17244 4.28377 4.29989 4.35979 4.44824 4.65449 4.78753 4.79734 4.85632 4.91701 4.94903 5.03263 5.20407 5.31466 5.37347 5.57850 5.99790 6.34827 6.76286 6.84557 7.41769 8.40955 8.64038 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.048087 B = 0.004111 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.132578 B = 6810.162390 C = 6943.508461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.043 3.957 3 C -0.259 4.259 4 S 0.140 5.860 5 C 0.052 3.948 6 C -0.019 4.019 7 H 0.104 0.896 8 C -0.106 4.106 9 C 0.115 3.885 10 N -0.651 5.651 11 C 0.551 3.449 12 O -0.633 6.633 13 C -0.562 4.562 14 H 0.091 0.909 15 C 0.027 3.973 16 N -0.822 5.822 17 Si 1.001 2.999 18 H -0.259 1.259 19 H -0.247 1.247 20 H -0.274 1.274 21 C 0.125 3.875 22 N -0.497 5.497 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.100 0.900 26 H 0.209 0.791 27 H 0.112 0.888 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.275 0.725 32 H 0.052 0.948 33 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.964 9.858 12.148 20.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.089 4.089 3 C -0.398 4.398 4 S 0.395 5.605 5 C -0.226 4.226 6 C -0.042 4.042 7 H 0.123 0.877 8 C -0.144 4.144 9 C -0.008 4.008 10 N -0.389 5.389 11 C 0.358 3.642 12 O -0.521 6.521 13 C -0.598 4.598 14 H 0.109 0.891 15 C -0.188 4.188 16 N -0.451 5.451 17 Si 0.819 3.181 18 H -0.184 1.184 19 H -0.170 1.170 20 H -0.199 1.199 21 C -0.001 4.001 22 N -0.212 5.212 23 H 0.099 0.901 24 H 0.089 0.911 25 H 0.118 0.882 26 H 0.225 0.775 27 H 0.131 0.869 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.164 9.898 11.272 19.313 hybrid contribution -0.245 -0.415 -0.408 0.632 sum -12.409 9.483 10.864 19.025 Atomic orbital electron populations 1.20446 0.84969 1.04318 1.03630 1.20850 0.99765 0.86273 1.01996 1.27265 0.94480 1.05097 1.12945 1.84062 1.07941 1.01444 1.67009 1.26597 0.93590 0.98617 1.03755 1.20859 0.91618 0.95058 0.96657 0.87743 1.22801 0.92982 1.02423 0.96237 1.21875 0.98113 1.00584 0.80261 1.48508 1.24862 1.58229 1.07329 1.18482 0.81776 0.78925 0.84968 1.90558 1.78680 1.66029 1.16798 1.21371 1.04499 1.37614 0.96322 0.89060 1.27053 1.02961 0.94123 0.94671 1.70198 1.32113 1.36433 1.06396 0.84992 0.75861 0.78411 0.78804 1.18369 1.17019 1.19895 1.21944 0.86156 0.95591 0.96378 1.66133 1.04839 1.33373 1.16884 0.90119 0.91054 0.88154 0.77451 0.86923 0.89379 0.91908 0.91634 0.91468 0.92972 0.94073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.31 71.24 0.73 -0.41 16 2 C 0.04 0.98 6.74 41.53 0.28 1.26 16 3 C -0.26 -5.07 11.13 66.78 0.74 -4.33 16 4 S 0.14 3.33 21.79 -56.49 -1.23 2.10 16 5 C 0.05 1.49 6.26 88.52 0.55 2.05 16 6 C -0.02 -0.60 3.55 -10.07 -0.04 -0.64 16 7 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 8 C -0.11 -2.77 6.40 31.78 0.20 -2.57 16 9 C 0.11 4.01 6.06 86.73 0.53 4.53 16 10 N -0.65 -30.68 3.32 -816.42 -2.71 -33.39 16 11 C 0.55 33.07 7.78 86.36 0.67 33.74 16 12 O -0.63 -44.06 15.30 -4.31 -0.07 -44.12 16 13 C -0.56 -32.09 9.05 24.83 0.22 -31.86 16 14 H 0.09 4.64 7.17 -2.91 -0.02 4.62 16 15 C 0.03 1.52 5.49 85.30 0.47 1.98 16 16 N -0.82 -50.89 11.85 21.84 0.26 -50.63 16 17 Si 1.00 40.80 29.56 68.60 2.03 42.83 16 18 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 19 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 20 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 21 C 0.12 5.09 6.35 86.93 0.55 5.64 16 22 N -0.50 -14.46 10.53 -179.40 -1.89 -16.35 16 23 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 24 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 25 H 0.10 0.96 8.12 -2.39 -0.02 0.94 16 26 H 0.21 2.49 8.06 -2.91 -0.02 2.46 16 27 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.09 2.05 7.57 -2.39 -0.02 2.04 16 29 H 0.06 2.14 8.12 -2.39 -0.02 2.12 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.28 15.40 8.29 -92.71 -0.77 14.63 16 32 H 0.05 2.07 7.25 -2.38 -0.02 2.05 16 33 H 0.04 1.90 8.03 -2.39 -0.02 1.88 16 Total: -1.00 -79.75 296.12 2.43 -77.33 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 1.12 Total: 12.84 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 4.92 Total: 9.40 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -4.34 Total: -100.37 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -0.07 Total: -44.12 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -1.23 Total: 2.10 kcal Total: -79.75 2.43 -77.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874498472.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.357 kcal (2) G-P(sol) polarization free energy of solvation -79.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds