Wall clock time and date at job start Mon Mar 30 2020 00:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81398 * 102.99683 * 2 1 4 4 H 1.09001 * 109.47585 * 54.99849 * 3 2 1 5 5 C 1.53000 * 109.47288 * 294.99758 * 3 2 1 6 6 C 1.50703 * 109.47170 * 174.99697 * 3 2 1 7 7 O 1.21276 * 119.99515 * 24.99895 * 6 3 2 8 8 N 1.34776 * 120.00229 * 204.99987 * 6 3 2 9 9 C 1.39273 * 119.99921 * 185.58555 * 8 6 3 10 10 C 1.39667 * 119.57509 * 18.82176 * 9 8 6 11 11 C 1.38654 * 119.49348 * 180.02562 * 10 9 8 12 12 C 1.38342 * 118.67126 * 0.02562 * 11 10 9 13 13 C 1.40572 * 119.12853 * 359.97438 * 12 11 10 14 14 C 1.41345 * 119.78776 * 179.97438 * 13 12 11 15 15 H 1.07991 * 119.99702 * 8.93844 * 14 13 12 16 16 C 1.40030 * 119.99850 * 188.93045 * 14 13 12 17 17 N 1.30746 * 119.99502 * 196.07234 * 16 14 13 18 18 Si 1.86802 * 120.00103 * 16.07752 * 16 14 13 19 19 H 1.48496 * 109.46853 * 269.99902 * 18 16 14 20 20 H 1.48496 * 109.46969 * 29.99752 * 18 16 14 21 21 H 1.48501 * 109.46920 * 150.00007 * 18 16 14 22 22 N 1.31899 * 119.57173 * 199.12630 * 9 8 6 23 23 H 1.09004 * 109.46641 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47432 * 300.00226 * 1 2 3 25 25 H 1.08999 * 109.46915 * 60.00425 * 1 2 3 26 26 H 1.09009 * 109.46768 * 300.00188 * 5 3 2 27 27 H 1.08995 * 109.47335 * 59.99775 * 5 3 2 28 28 H 1.08991 * 109.47493 * 180.02562 * 5 3 2 29 29 H 0.96994 * 120.00061 * 5.57444 * 8 6 3 30 30 H 1.08003 * 120.25554 * 0.05132 * 10 9 8 31 31 H 1.08005 * 120.66499 * 179.97438 * 11 10 9 32 32 H 1.07997 * 120.43506 * 180.02562 * 12 11 10 33 33 H 0.96992 * 120.00226 * 354.93965 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2542 0.8418 5 6 1.7427 2.4016 -1.3074 6 6 3.7141 1.9387 0.1239 7 8 4.4583 1.0532 -0.2407 8 7 4.2215 3.0756 0.6400 9 6 5.5987 3.2830 0.6477 10 6 6.4133 2.5349 -0.2052 11 6 7.7842 2.7423 -0.1957 12 6 8.3060 3.6909 0.6656 13 6 7.4335 4.4115 1.4996 14 6 7.9517 5.3836 2.3852 15 1 8.9897 5.6745 2.3204 16 6 7.1191 5.9696 3.3466 17 7 7.4885 7.0703 3.9477 18 14 5.4806 5.1787 3.7701 19 1 4.4232 5.7246 2.8819 20 1 5.5766 3.7091 3.5801 21 1 5.1397 5.4737 5.1850 22 7 6.1174 4.1791 1.4648 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 2.2355 1.9149 -2.1492 27 1 0.6636 2.2778 -1.3970 28 1 1.9882 3.4635 -1.3076 29 1 3.6275 3.7496 1.0058 30 1 5.9786 1.8006 -0.8674 31 1 8.4318 2.1741 -0.8470 32 1 9.3695 3.8759 0.6961 33 1 8.3695 7.4410 3.7825 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882476433.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:16 Heat of formation + Delta-G solvation = -9.318650 kcal Electronic energy + Delta-G solvation = -17683.272144 eV Core-core repulsion = 14834.969721 eV Total energy + Delta-G solvation = -2848.302423 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.23987 -38.18883 -34.63491 -33.77700 -33.16595 -31.09901 -29.52752 -28.94916 -25.61831 -24.83350 -22.16962 -21.75323 -19.92410 -18.41547 -17.68718 -16.85355 -16.14662 -15.47859 -15.03115 -14.51062 -14.47926 -14.15993 -13.88782 -13.66716 -13.41681 -12.96445 -12.75062 -12.44168 -12.28935 -12.12903 -11.91656 -11.84949 -11.17571 -10.88864 -10.36588 -10.02813 -10.01533 -9.77523 -9.27459 -9.11099 -8.53932 -7.94686 -7.80967 -7.45669 -7.30000 -4.78190 1.27920 2.12885 2.35843 2.64749 3.00118 3.18690 3.44330 3.58602 3.87889 4.30575 4.52106 4.55204 4.64106 4.80142 4.89044 4.92679 5.25866 5.38574 5.50322 5.51732 5.82105 5.84162 6.04294 6.42999 6.50929 6.53150 7.09955 7.15822 7.41629 7.52760 7.58120 7.74337 8.08285 8.23670 8.38015 8.63008 9.40490 9.95284 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026686 B = 0.005657 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.986193 B = 4948.228520 C = 5673.085708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.185 6.185 3 C -0.092 4.092 4 H 0.109 0.891 5 C -0.142 4.142 6 C 0.535 3.465 7 O -0.492 6.492 8 N -0.649 5.649 9 C 0.383 3.617 10 C -0.310 4.310 11 C -0.036 4.036 12 C -0.276 4.276 13 C 0.274 3.726 14 C -0.481 4.481 15 H 0.084 0.916 16 C 0.050 3.950 17 N -0.803 5.803 18 Si 1.142 2.858 19 H -0.288 1.288 20 H -0.279 1.279 21 H -0.326 1.326 22 N -0.594 5.594 23 H 0.103 0.897 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.407 0.593 30 H 0.138 0.862 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.549 -7.461 -6.684 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.040 5.960 3 C -0.224 4.224 4 H 0.127 0.873 5 C -0.201 4.201 6 C 0.319 3.681 7 O -0.365 6.365 8 N -0.294 5.294 9 C 0.152 3.848 10 C -0.335 4.335 11 C -0.060 4.060 12 C -0.298 4.298 13 C 0.150 3.850 14 C -0.513 4.513 15 H 0.102 0.898 16 C -0.172 4.172 17 N -0.425 5.425 18 Si 0.975 3.025 19 H -0.215 1.215 20 H -0.207 1.207 21 H -0.258 1.258 22 N -0.319 5.319 23 H 0.122 0.878 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.243 0.757 30 H 0.155 0.845 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.123 -8.235 -5.520 17.255 hybrid contribution 0.985 0.991 -1.215 1.851 sum -13.138 -7.244 -6.735 16.445 Atomic orbital electron populations 1.23551 0.95785 1.06597 1.04934 1.87463 1.04718 1.05951 1.97864 1.23319 0.96877 0.98495 1.03738 0.87285 1.21996 1.01748 1.01469 0.94872 1.19550 0.88753 0.81803 0.78014 1.90676 1.59168 1.40071 1.46557 1.43157 1.06627 1.20132 1.59492 1.18042 0.82154 0.93051 0.91597 1.21506 0.93710 1.09761 1.08474 1.20919 0.94361 0.95061 0.95680 1.21624 0.99214 1.03730 1.05252 1.18177 0.85235 0.90205 0.91344 1.20670 0.99035 1.18316 1.13304 0.89770 1.27644 1.06259 0.92187 0.91142 1.70611 1.20894 1.13604 1.37390 0.82159 0.72064 0.76388 0.71906 1.21542 1.20670 1.25814 1.66166 1.15150 1.24820 1.25779 0.87837 0.90489 0.90371 0.90383 0.91215 0.90852 0.75727 0.84458 0.87573 0.87645 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 10.45 101.05 1.06 0.00 16 2 S -0.19 -2.31 21.10 -107.50 -2.27 -4.58 16 3 C -0.09 -1.11 3.18 -27.88 -0.09 -1.20 16 4 H 0.11 1.06 8.14 -51.92 -0.42 0.64 16 5 C -0.14 -1.35 9.08 37.16 0.34 -1.01 16 6 C 0.53 9.05 6.79 -10.98 -0.07 8.97 16 7 O -0.49 -9.97 12.94 5.56 0.07 -9.90 16 8 N -0.65 -11.96 5.41 -11.40 -0.06 -12.02 16 9 C 0.38 8.80 7.51 -154.98 -1.16 7.64 16 10 C -0.31 -7.05 8.83 -38.89 -0.34 -7.40 16 11 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 12 C -0.28 -6.63 9.83 -38.66 -0.38 -7.01 16 13 C 0.27 7.23 6.27 -85.00 -0.53 6.69 16 14 C -0.48 -13.08 9.51 -37.73 -0.36 -13.43 16 15 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 16 C 0.05 1.34 5.51 -17.34 -0.10 1.24 16 17 N -0.80 -21.65 13.65 55.55 0.76 -20.89 16 18 Si 1.14 27.42 25.93 -169.99 -4.41 23.01 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.93 6.55 56.52 0.37 -6.56 16 21 H -0.33 -7.68 7.11 56.52 0.40 -7.28 16 22 N -0.59 -15.05 5.06 -10.26 -0.05 -15.10 16 23 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 24 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.49 7.14 -51.92 -0.37 0.12 16 26 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 27 H 0.07 0.50 6.92 -51.93 -0.36 0.14 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.41 6.44 8.83 -40.82 -0.36 6.08 16 30 H 0.14 3.06 5.33 -52.50 -0.28 2.78 16 31 H 0.11 2.01 8.06 -52.48 -0.42 1.59 16 32 H 0.11 2.36 8.06 -52.49 -0.42 1.93 16 33 H 0.28 7.34 8.72 -40.82 -0.36 6.99 16 LS Contribution 293.80 15.07 4.43 4.43 Total: -1.00 -31.14 293.80 -7.51 -38.65 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -3.94 Total: 3.09 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -2.04 Total: -6.70 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.64 Total: -48.01 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.07 Total: -9.90 kcal Atomic # 14 Polarization: 27.42 SS G_CDS: -4.41 Total: 23.01 kcal Atomic # 16 Polarization: -2.31 SS G_CDS: -2.27 Total: -4.58 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.14 -7.51 -38.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882476433.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.334 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds