Wall clock time and date at job start Mon Mar 30 2020 00:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81398 * 102.99683 * 2 1 4 4 H 1.09001 * 109.47585 * 54.99849 * 3 2 1 5 5 C 1.53000 * 109.47288 * 294.99758 * 3 2 1 6 6 C 1.50703 * 109.47170 * 174.99697 * 3 2 1 7 7 O 1.21276 * 119.99515 * 24.99895 * 6 3 2 8 8 N 1.34776 * 120.00229 * 204.99987 * 6 3 2 9 9 C 1.39273 * 119.99921 * 185.58555 * 8 6 3 10 10 C 1.39667 * 119.57509 * 18.82176 * 9 8 6 11 11 C 1.38654 * 119.49348 * 180.02562 * 10 9 8 12 12 C 1.38342 * 118.67126 * 0.02562 * 11 10 9 13 13 C 1.40572 * 119.12853 * 359.97438 * 12 11 10 14 14 C 1.41345 * 119.78776 * 179.97438 * 13 12 11 15 15 H 1.07991 * 119.99702 * 8.93844 * 14 13 12 16 16 C 1.40030 * 119.99850 * 188.93045 * 14 13 12 17 17 N 1.30746 * 119.99502 * 196.07234 * 16 14 13 18 18 Si 1.86802 * 120.00103 * 16.07752 * 16 14 13 19 19 H 1.48496 * 109.46853 * 269.99902 * 18 16 14 20 20 H 1.48496 * 109.46969 * 29.99752 * 18 16 14 21 21 H 1.48501 * 109.46920 * 150.00007 * 18 16 14 22 22 N 1.31899 * 119.57173 * 199.12630 * 9 8 6 23 23 H 1.09004 * 109.46641 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47432 * 300.00226 * 1 2 3 25 25 H 1.08999 * 109.46915 * 60.00425 * 1 2 3 26 26 H 1.09009 * 109.46768 * 300.00188 * 5 3 2 27 27 H 1.08995 * 109.47335 * 59.99775 * 5 3 2 28 28 H 1.08991 * 109.47493 * 180.02562 * 5 3 2 29 29 H 0.96994 * 120.00061 * 5.57444 * 8 6 3 30 30 H 1.08003 * 120.25554 * 0.05132 * 10 9 8 31 31 H 1.08005 * 120.66499 * 179.97438 * 11 10 9 32 32 H 1.07997 * 120.43506 * 180.02562 * 12 11 10 33 33 H 0.96992 * 120.00226 * 354.93965 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2542 0.8418 5 6 1.7427 2.4016 -1.3074 6 6 3.7141 1.9387 0.1239 7 8 4.4583 1.0532 -0.2407 8 7 4.2215 3.0756 0.6400 9 6 5.5987 3.2830 0.6477 10 6 6.4133 2.5349 -0.2052 11 6 7.7842 2.7423 -0.1957 12 6 8.3060 3.6909 0.6656 13 6 7.4335 4.4115 1.4996 14 6 7.9517 5.3836 2.3852 15 1 8.9897 5.6745 2.3204 16 6 7.1191 5.9696 3.3466 17 7 7.4885 7.0703 3.9477 18 14 5.4806 5.1787 3.7701 19 1 4.4232 5.7246 2.8819 20 1 5.5766 3.7091 3.5801 21 1 5.1397 5.4737 5.1850 22 7 6.1174 4.1791 1.4648 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 2.2355 1.9149 -2.1492 27 1 0.6636 2.2778 -1.3970 28 1 1.9882 3.4635 -1.3076 29 1 3.6275 3.7496 1.0058 30 1 5.9786 1.8006 -0.8674 31 1 8.4318 2.1741 -0.8470 32 1 9.3695 3.8759 0.6961 33 1 8.3695 7.4410 3.7825 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882476433.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:16 Heat of formation + Delta-G solvation = -28.660864 kcal Electronic energy + Delta-G solvation = -17684.110885 eV Core-core repulsion = 14834.969721 eV Total energy + Delta-G solvation = -2849.141164 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.77141 -39.93189 -36.31420 -35.47433 -34.33791 -32.97848 -31.24481 -29.60114 -27.40385 -26.04517 -23.76114 -23.51781 -21.50202 -20.32019 -19.15171 -18.27537 -17.37088 -16.92318 -16.78829 -16.21092 -15.61366 -15.51901 -15.28544 -14.98331 -14.49898 -14.31432 -14.25892 -13.91566 -13.75501 -13.33245 -13.15548 -12.86853 -12.69913 -12.63561 -12.19479 -11.87611 -11.61071 -11.06260 -10.85589 -10.77521 -10.41072 -9.87364 -9.33991 -9.25557 -8.72707 -6.81324 0.34435 0.49503 0.74489 1.45536 1.50201 1.60712 1.71219 1.82115 1.99440 2.39224 2.61675 3.33973 3.55577 3.76698 3.92474 4.06775 4.37516 4.39635 4.41504 4.60894 4.62424 4.67395 4.69211 4.76142 4.95113 5.12662 5.33096 5.37247 5.40529 5.70707 5.78731 5.92257 6.22863 6.39391 6.63202 6.93407 7.49783 7.92112 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026686 B = 0.005657 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.986193 B = 4948.228520 C = 5673.085708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.260 6.260 3 C -0.075 4.075 4 H 0.137 0.863 5 C -0.138 4.138 6 C 0.533 3.467 7 O -0.527 6.527 8 N -0.645 5.645 9 C 0.374 3.626 10 C -0.310 4.310 11 C -0.030 4.030 12 C -0.293 4.293 13 C 0.259 3.741 14 C -0.513 4.513 15 H 0.069 0.931 16 C 0.023 3.977 17 N -0.824 5.824 18 Si 1.172 2.828 19 H -0.269 1.269 20 H -0.294 1.294 21 H -0.320 1.320 22 N -0.606 5.606 23 H 0.114 0.886 24 H 0.091 0.909 25 H 0.096 0.904 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.420 0.580 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.115 0.885 33 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.335 -8.330 -7.696 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.035 6.035 3 C -0.207 4.207 4 H 0.155 0.845 5 C -0.196 4.196 6 C 0.320 3.680 7 O -0.402 6.402 8 N -0.292 5.292 9 C 0.142 3.858 10 C -0.334 4.334 11 C -0.054 4.054 12 C -0.315 4.315 13 C 0.134 3.866 14 C -0.545 4.545 15 H 0.088 0.912 16 C -0.195 4.195 17 N -0.446 5.446 18 Si 1.002 2.998 19 H -0.195 1.195 20 H -0.222 1.222 21 H -0.252 1.252 22 N -0.331 5.331 23 H 0.133 0.867 24 H 0.110 0.890 25 H 0.115 0.885 26 H 0.082 0.918 27 H 0.120 0.880 28 H 0.099 0.901 29 H 0.258 0.742 30 H 0.163 0.837 31 H 0.160 0.840 32 H 0.133 0.867 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.942 -9.089 -6.546 20.310 hybrid contribution 1.795 1.073 -1.043 2.337 sum -15.147 -8.017 -7.590 18.743 Atomic orbital electron populations 1.23610 0.90614 1.07882 1.06584 1.87746 1.10433 1.07237 1.98122 1.23266 0.92792 0.98334 1.06258 0.84465 1.22028 1.03544 1.01361 0.92715 1.20480 0.90898 0.80399 0.76231 1.90642 1.60732 1.41083 1.47752 1.43221 1.04970 1.21213 1.59792 1.18394 0.84324 0.92229 0.90843 1.21841 0.94199 1.09291 1.08061 1.21315 0.94743 0.94205 0.95134 1.21789 0.99666 1.04322 1.05700 1.18368 0.86266 0.90387 0.91619 1.20675 0.98730 1.20147 1.14960 0.91241 1.28422 1.08017 0.92159 0.90889 1.70633 1.21130 1.14338 1.38544 0.81766 0.70743 0.74926 0.72346 1.19456 1.22176 1.25193 1.66167 1.14839 1.25617 1.26464 0.86730 0.88984 0.88488 0.91781 0.88020 0.90068 0.74182 0.83700 0.84007 0.86696 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 10.45 113.37 1.19 -0.13 16 2 S -0.26 -5.92 21.10 -56.49 -1.19 -7.11 16 3 C -0.07 -1.58 3.18 29.85 0.09 -1.48 16 4 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 5 C -0.14 -2.14 9.08 71.98 0.65 -1.48 16 6 C 0.53 17.02 6.79 87.66 0.60 17.62 16 7 O -0.53 -20.79 12.94 -3.02 -0.04 -20.83 16 8 N -0.65 -22.53 5.41 -308.37 -1.67 -24.20 16 9 C 0.37 16.73 7.51 133.25 1.00 17.73 16 10 C -0.31 -13.65 8.83 22.71 0.20 -13.45 16 11 C -0.03 -1.27 10.15 22.39 0.23 -1.05 16 12 C -0.29 -13.96 9.83 22.86 0.22 -13.73 16 13 C 0.26 13.70 6.27 40.19 0.25 13.95 16 14 C -0.51 -28.58 9.51 23.47 0.22 -28.35 16 15 H 0.07 3.93 8.06 -2.92 -0.02 3.91 16 16 C 0.02 1.25 5.51 85.29 0.47 1.72 16 17 N -0.82 -45.20 13.65 21.84 0.30 -44.90 16 18 Si 1.17 55.20 25.93 68.60 1.78 56.98 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.29 -14.38 6.55 99.48 0.65 -13.73 16 21 H -0.32 -14.59 7.11 99.48 0.71 -13.88 16 22 N -0.61 -30.30 5.06 -186.36 -0.94 -31.24 16 23 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.10 0.75 7.14 -2.39 -0.02 0.73 16 26 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.10 0.96 6.92 -2.39 -0.02 0.94 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.42 12.24 8.83 -92.71 -0.82 11.42 16 30 H 0.15 6.24 5.33 -3.16 -0.02 6.23 16 31 H 0.14 4.96 8.06 -2.91 -0.02 4.94 16 32 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16 33 H 0.28 15.04 8.72 -92.71 -0.81 14.23 16 Total: -1.00 -68.31 293.80 3.58 -64.73 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.22 Total: 15.23 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 5.13 Total: -8.65 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -2.31 Total: -100.34 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.04 Total: -20.83 kcal Atomic # 14 Polarization: 55.20 SS G_CDS: 1.78 Total: 56.98 kcal Atomic # 16 Polarization: -5.92 SS G_CDS: -1.19 Total: -7.11 kcal Total: -68.31 3.58 -64.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882476433.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.071 kcal (2) G-P(sol) polarization free energy of solvation -68.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds