Wall clock time and date at job start Mon Mar 30 2020 00:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76197 * 103.00277 * 2 1 4 4 C 1.39047 * 120.45524 * 359.97438 * 3 2 1 5 5 N 1.31783 * 120.79544 * 180.02562 * 4 3 2 6 6 C 1.31823 * 121.87681 * 359.97438 * 5 4 3 7 7 C 1.38916 * 120.84144 * 0.27538 * 6 5 4 8 8 N 1.39954 * 120.44550 * 179.70174 * 7 6 5 9 9 C 1.34782 * 119.99767 * 212.70636 * 8 7 6 10 10 O 1.21278 * 119.99971 * 5.12340 * 9 8 7 11 11 C 1.50705 * 119.99564 * 185.12184 * 9 8 7 12 12 H 1.08996 * 109.47007 * 60.00210 * 11 9 8 13 13 C 1.53002 * 109.47006 * 299.99691 * 11 9 8 14 14 C 1.50704 * 109.46706 * 180.02562 * 11 9 8 15 15 H 1.07994 * 120.00062 * 5.45013 * 14 11 9 16 16 C 1.37871 * 119.99672 * 185.44850 * 14 11 9 17 17 N 1.31519 * 120.00197 * 6.87041 * 16 14 11 18 18 Si 1.86800 * 120.00041 * 186.86908 * 16 14 11 19 19 H 1.48499 * 109.47052 * 94.98636 * 18 16 14 20 20 H 1.48497 * 109.47444 * 214.98703 * 18 16 14 21 21 H 1.48499 * 109.47004 * 334.99209 * 18 16 14 22 22 C 1.39118 * 119.10938 * 359.48037 * 7 6 5 23 23 H 1.09007 * 109.46962 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.46858 * 300.00014 * 1 2 3 25 25 H 1.08995 * 109.46862 * 60.00225 * 1 2 3 26 26 H 1.07996 * 119.60648 * 359.97438 * 4 3 2 27 27 H 1.08004 * 119.58240 * 180.02562 * 6 5 4 28 28 H 0.96993 * 120.00289 * 32.70578 * 8 7 6 29 29 H 1.09007 * 109.46956 * 54.88520 * 13 11 9 30 30 H 1.09006 * 109.46781 * 174.88205 * 13 11 9 31 31 H 1.08995 * 109.47439 * 294.88560 * 13 11 9 32 32 H 0.97003 * 119.99951 * 179.97438 * 17 16 14 33 33 H 1.08002 * 120.85714 * 180.23747 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.2011 2.6732 -0.0005 5 7 1.4900 3.9590 -0.0010 6 6 2.7348 4.3928 -0.0006 7 6 3.7998 3.5009 -0.0052 8 7 5.1182 3.9706 -0.0110 9 6 6.0799 3.2716 -0.6459 10 8 5.7882 2.2862 -1.2899 11 6 7.5175 3.7145 -0.5555 12 1 7.8340 3.7104 0.4875 13 6 7.6521 5.1287 -1.1239 14 6 8.3847 2.7705 -1.3480 15 1 7.9318 1.9864 -1.9364 16 6 9.7563 2.9080 -1.3216 17 7 10.3150 3.7726 -0.5030 18 14 10.8212 1.8664 -2.4487 19 1 11.1233 2.6278 -3.6873 20 1 12.0894 1.5252 -1.7557 21 1 10.0973 0.6181 -2.7993 22 6 3.5384 2.1345 0.0006 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.1680 2.3586 -0.0014 27 1 2.9292 5.4552 -0.0006 28 1 5.3398 4.7992 0.4419 29 1 6.9575 5.7941 -0.6109 30 1 8.6720 5.4841 -0.9760 31 1 7.4228 5.1154 -2.1893 32 1 11.2800 3.8690 -0.4843 33 1 4.3449 1.4162 0.0010 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891886260.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:06 Heat of formation + Delta-G solvation = -6.177088 kcal Electronic energy + Delta-G solvation = -17407.477227 eV Core-core repulsion = 14559.311033 eV Total energy + Delta-G solvation = -2848.166194 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.48192 -38.72085 -34.66853 -33.88291 -32.17738 -31.07466 -29.90540 -28.73010 -25.21986 -24.06800 -23.74255 -22.15630 -19.63331 -18.22390 -16.99022 -16.67417 -16.38252 -15.76829 -15.49503 -14.63493 -14.43275 -14.34570 -14.04916 -13.52145 -13.26917 -13.02792 -12.83709 -12.62955 -12.11314 -11.77295 -11.12617 -10.98464 -10.92430 -10.75938 -10.59404 -10.41920 -10.36141 -10.04722 -9.55549 -9.12357 -8.75338 -8.47289 -8.15292 -7.52800 -6.14264 -4.14881 0.96916 1.32182 1.35373 2.26246 3.29139 3.33790 3.36133 3.40321 3.50377 3.86708 4.40828 4.49976 4.82471 4.83533 4.86601 5.04015 5.18633 5.22067 5.29169 5.41107 5.85009 6.03199 6.19747 6.31932 6.43522 6.63437 6.72699 6.96014 7.29786 7.52468 7.76196 7.90651 7.91782 8.20480 8.86258 8.94549 9.50400 10.96106 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.028190 B = 0.004627 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.019359 B = 6050.151771 C = 6876.525825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S -0.095 6.095 3 C -0.119 4.119 4 C 0.053 3.947 5 N -0.449 5.449 6 C 0.056 3.944 7 C 0.139 3.861 8 N -0.683 5.683 9 C 0.518 3.482 10 O -0.518 6.518 11 C 0.031 3.969 12 H 0.065 0.935 13 C -0.129 4.129 14 C -0.507 4.507 15 H 0.075 0.925 16 C 0.062 3.938 17 N -0.894 5.894 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.271 1.271 22 C -0.068 4.068 23 H 0.109 0.891 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.152 0.848 27 H 0.159 0.841 28 H 0.412 0.588 29 H 0.016 0.984 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.262 0.738 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.380 -0.763 3.583 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 S 0.146 5.854 3 C -0.234 4.234 4 C -0.111 4.111 5 N -0.157 5.157 6 C -0.107 4.107 7 C 0.039 3.961 8 N -0.329 5.329 9 C 0.310 3.690 10 O -0.391 6.391 11 C 0.010 3.990 12 H 0.083 0.917 13 C -0.188 4.188 14 C -0.546 4.546 15 H 0.093 0.907 16 C -0.139 4.139 17 N -0.533 5.533 18 Si 0.726 3.274 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.196 1.196 22 C -0.101 4.101 23 H 0.127 0.873 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.169 0.831 27 H 0.176 0.824 28 H 0.249 0.751 29 H 0.035 0.965 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -16.339 -1.871 3.154 16.745 hybrid contribution 0.632 0.483 -0.355 0.871 sum -15.706 -1.388 2.799 16.014 Atomic orbital electron populations 1.23702 0.95292 1.07189 1.05735 1.85700 1.05581 1.01901 1.92223 1.22685 0.97100 0.98230 1.05362 1.22591 0.98289 0.88096 1.02139 1.67499 1.21175 1.16454 1.10561 1.22565 0.86733 0.99781 1.01599 1.18832 0.86570 0.93083 0.97641 1.44177 1.05227 1.28016 1.55503 1.22439 0.88778 0.82164 0.75659 1.90569 1.82960 1.26343 1.39225 1.18946 0.84510 0.95301 1.00258 0.91737 1.21735 1.02290 0.95621 0.99108 1.21077 0.90410 1.14692 1.28389 0.90654 1.24935 0.97879 0.95655 0.95449 1.69935 1.10912 1.36208 1.36203 0.86450 0.79537 0.80724 0.80646 1.20625 1.21230 1.19606 1.21263 0.95353 0.95388 0.98143 0.87281 0.89663 0.89621 0.83077 0.82351 0.75126 0.96474 0.90191 0.94285 0.92816 0.82880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.16 101.05 0.93 -0.23 16 2 S -0.09 -1.19 22.58 -107.50 -2.43 -3.61 16 3 C -0.12 -1.75 6.13 -38.92 -0.24 -1.99 16 4 C 0.05 0.71 10.54 -17.27 -0.18 0.53 16 5 N -0.45 -6.52 10.35 -12.89 -0.13 -6.65 16 6 C 0.06 0.80 11.11 -17.30 -0.19 0.61 16 7 C 0.14 2.27 6.30 -83.57 -0.53 1.75 16 8 N -0.68 -11.43 5.26 -9.78 -0.05 -11.48 16 9 C 0.52 11.18 6.91 -10.98 -0.08 11.10 16 10 O -0.52 -12.79 13.17 5.56 0.07 -12.72 16 11 C 0.03 0.73 2.52 -92.92 -0.23 0.49 16 12 H 0.06 1.58 8.11 -51.93 -0.42 1.16 16 13 C -0.13 -2.74 8.91 37.16 0.33 -2.41 16 14 C -0.51 -13.87 8.29 -34.44 -0.29 -14.15 16 15 H 0.08 2.18 6.78 -52.49 -0.36 1.83 16 16 C 0.06 1.69 5.27 -17.82 -0.09 1.60 16 17 N -0.89 -24.50 12.07 55.43 0.67 -23.83 16 18 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.07 -1.17 8.53 -38.90 -0.33 -1.50 16 23 H 0.11 0.64 8.14 -51.92 -0.42 0.22 16 24 H 0.08 0.56 7.76 -51.93 -0.40 0.16 16 25 H 0.08 0.60 7.76 -51.93 -0.40 0.20 16 26 H 0.15 1.57 5.90 -52.49 -0.31 1.26 16 27 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16 28 H 0.41 5.57 8.03 -40.82 -0.33 5.24 16 29 H 0.02 0.28 7.32 -51.93 -0.38 -0.10 16 30 H 0.08 1.86 6.92 -51.93 -0.36 1.50 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.15 2.99 6.49 -52.49 -0.34 2.65 16 LS Contribution 295.68 15.07 4.46 4.46 Total: -1.00 -30.86 295.68 -7.04 -37.90 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -3.70 Total: 3.81 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -0.90 Total: -4.21 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.48 Total: -41.97 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.07 Total: -12.72 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.19 SS G_CDS: -2.43 Total: -3.61 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.86 -7.04 -37.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891886260.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.723 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds