Wall clock time and date at job start Mon Mar 30 2020 00:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76194 * 103.00393 * 2 1 4 4 C 1.39047 * 120.45899 * 0.02562 * 3 2 1 5 5 N 1.31775 * 120.79844 * 180.02562 * 4 3 2 6 6 C 1.31823 * 121.87766 * 359.97344 * 5 4 3 7 7 C 1.38915 * 120.84082 * 0.27708 * 6 5 4 8 8 N 1.39959 * 120.44183 * 179.69678 * 7 6 5 9 9 C 1.34775 * 119.99656 * 212.61567 * 8 7 6 10 10 O 1.21287 * 120.00003 * 5.27117 * 9 8 7 11 11 C 1.50698 * 119.99726 * 185.27628 * 9 8 7 12 12 H 1.09007 * 109.46926 * 299.99768 * 11 9 8 13 13 C 1.53001 * 109.47623 * 59.99865 * 11 9 8 14 14 C 1.50706 * 109.47076 * 179.97438 * 11 9 8 15 15 H 1.07995 * 119.99528 * 0.02562 * 14 11 9 16 16 C 1.37879 * 119.99541 * 179.97438 * 14 11 9 17 17 N 1.31511 * 120.00619 * 359.97438 * 16 14 11 18 18 Si 1.86807 * 119.99389 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.47307 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46911 * 119.99914 * 18 16 14 21 21 H 1.48492 * 109.47138 * 239.99896 * 18 16 14 22 22 C 1.39114 * 119.10823 * 359.47748 * 7 6 5 23 23 H 1.08995 * 109.46736 * 59.99739 * 1 2 3 24 24 H 1.09002 * 109.47207 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47081 * 300.00014 * 1 2 3 26 26 H 1.07993 * 119.59858 * 359.97438 * 4 3 2 27 27 H 1.08007 * 119.57558 * 180.02562 * 6 5 4 28 28 H 0.96994 * 120.00050 * 32.62207 * 8 7 6 29 29 H 1.08998 * 109.47413 * 180.02562 * 13 11 9 30 30 H 1.09005 * 109.46957 * 300.00226 * 13 11 9 31 31 H 1.08999 * 109.46746 * 59.99927 * 13 11 9 32 32 H 0.96996 * 120.00418 * 179.97438 * 17 16 14 33 33 H 1.08007 * 120.85495 * 180.23702 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.2012 2.6732 0.0005 5 7 1.4901 3.9589 0.0000 6 6 2.7349 4.3927 -0.0005 7 6 3.7999 3.5008 -0.0063 8 7 5.1183 3.9706 -0.0131 9 6 6.0797 3.2708 -0.6475 10 8 5.7875 2.2860 -1.2923 11 6 7.5177 3.7118 -0.5554 12 1 7.6153 4.7195 -0.9596 13 6 7.9607 3.7047 0.9091 14 6 8.3847 2.7665 -1.3465 15 1 7.9389 1.9303 -1.8645 16 6 9.7470 2.9700 -1.4098 17 7 10.2897 3.9891 -0.7803 18 14 10.8217 1.7977 -2.3898 19 1 9.9743 0.7419 -2.9998 20 1 11.5239 2.5487 -3.4614 21 1 11.8213 1.1713 -1.4879 22 6 3.5384 2.1345 -0.0005 23 1 -0.3632 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.1682 2.3586 0.0005 27 1 2.9292 5.4552 -0.0005 28 1 5.3401 4.7997 0.4387 29 1 9.0007 4.0242 0.9757 30 1 7.3336 4.3882 1.4816 31 1 7.8631 2.6972 1.3132 32 1 11.2480 4.1320 -0.8245 33 1 4.3449 1.4161 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891886261.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:09 Heat of formation + Delta-G solvation = -4.968108 kcal Electronic energy + Delta-G solvation = -17431.270247 eV Core-core repulsion = 14583.156478 eV Total energy + Delta-G solvation = -2848.113769 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.48100 -38.71890 -34.67080 -33.91803 -32.17629 -31.02327 -29.88116 -28.72247 -25.24866 -24.02253 -23.76530 -22.12829 -19.62954 -18.20540 -16.98008 -16.60715 -16.36496 -15.89085 -15.52740 -14.60579 -14.43587 -14.31843 -14.08639 -13.56466 -13.25372 -12.98208 -12.82024 -12.62384 -12.12627 -11.70300 -11.11119 -10.96286 -10.83550 -10.74647 -10.62473 -10.42571 -10.32451 -10.05369 -9.55746 -9.08567 -8.79710 -8.45290 -8.14845 -7.52854 -6.12185 -4.16220 0.96950 1.32248 1.35319 2.26174 3.27866 3.33120 3.36080 3.41508 3.51340 3.86768 4.40330 4.50075 4.82347 4.83497 4.86690 5.04027 5.18208 5.22058 5.29394 5.41040 5.85814 6.04087 6.20136 6.32312 6.49968 6.68952 6.77074 6.97101 7.32312 7.61095 7.78069 7.91808 7.97190 8.20997 8.86166 8.93665 9.50080 10.95448 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.028512 B = 0.004612 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.802896 B = 6070.139022 C = 6782.962682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 S -0.095 6.095 3 C -0.119 4.119 4 C 0.053 3.947 5 N -0.449 5.449 6 C 0.056 3.944 7 C 0.140 3.860 8 N -0.682 5.682 9 C 0.518 3.482 10 O -0.519 6.519 11 C 0.032 3.968 12 H 0.058 0.942 13 C -0.134 4.134 14 C -0.505 4.505 15 H 0.076 0.924 16 C 0.060 3.940 17 N -0.895 5.895 18 Si 0.900 3.100 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.068 4.068 23 H 0.085 0.915 24 H 0.109 0.891 25 H 0.084 0.916 26 H 0.152 0.848 27 H 0.159 0.841 28 H 0.412 0.588 29 H 0.097 0.903 30 H 0.014 0.986 31 H 0.033 0.967 32 H 0.262 0.738 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.159 -1.518 4.553 16.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 S 0.146 5.854 3 C -0.234 4.234 4 C -0.111 4.111 5 N -0.157 5.157 6 C -0.107 4.107 7 C 0.039 3.961 8 N -0.328 5.328 9 C 0.309 3.691 10 O -0.392 6.392 11 C 0.011 3.989 12 H 0.075 0.925 13 C -0.192 4.192 14 C -0.543 4.543 15 H 0.094 0.906 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.728 3.272 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.101 4.101 23 H 0.104 0.896 24 H 0.127 0.873 25 H 0.103 0.897 26 H 0.169 0.831 27 H 0.177 0.823 28 H 0.249 0.751 29 H 0.115 0.885 30 H 0.033 0.967 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -16.123 -2.610 4.094 16.838 hybrid contribution 0.606 0.419 -0.277 0.787 sum -15.517 -2.191 3.816 16.128 Atomic orbital electron populations 1.23702 0.95285 1.07188 1.05737 1.85694 1.05589 1.01915 1.92230 1.22685 0.97102 0.98224 1.05372 1.22587 0.98287 0.88097 1.02151 1.67496 1.21174 1.16455 1.10561 1.22565 0.86728 0.99783 1.01618 1.18833 0.86567 0.93087 0.97625 1.44160 1.05204 1.27932 1.55535 1.22454 0.88771 0.82286 0.75545 1.90571 1.82989 1.26364 1.39237 1.18935 0.84312 0.99379 0.96281 0.92471 1.21774 1.04244 0.98643 0.94553 1.21145 0.91243 1.11809 1.30120 0.90607 1.24939 0.97930 0.95588 0.95623 1.69863 1.11709 1.28929 1.42896 0.86378 0.80096 0.80961 0.79742 1.19502 1.20962 1.20950 1.21257 0.95339 0.95387 0.98148 0.89618 0.87282 0.89665 0.83081 0.82337 0.75133 0.88492 0.96734 0.94797 0.92853 0.82908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.16 101.05 0.93 -0.23 16 2 S -0.09 -1.19 22.58 -107.50 -2.43 -3.62 16 3 C -0.12 -1.75 6.13 -38.92 -0.24 -1.99 16 4 C 0.05 0.71 10.54 -17.28 -0.18 0.53 16 5 N -0.45 -6.53 10.34 -12.89 -0.13 -6.66 16 6 C 0.06 0.80 11.11 -17.30 -0.19 0.60 16 7 C 0.14 2.28 6.30 -83.57 -0.53 1.75 16 8 N -0.68 -11.45 5.21 -9.79 -0.05 -11.50 16 9 C 0.52 11.20 6.91 -10.99 -0.08 11.13 16 10 O -0.52 -12.83 13.16 5.55 0.07 -12.76 16 11 C 0.03 0.76 2.64 -92.92 -0.24 0.51 16 12 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 13 C -0.13 -2.92 8.87 37.16 0.33 -2.59 16 14 C -0.50 -13.81 8.37 -34.44 -0.29 -14.10 16 15 H 0.08 2.20 6.75 -52.49 -0.35 1.85 16 16 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 17 N -0.89 -24.36 11.32 55.43 0.63 -23.73 16 18 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.07 -1.17 8.53 -38.90 -0.33 -1.50 16 23 H 0.08 0.60 7.76 -51.93 -0.40 0.20 16 24 H 0.11 0.64 8.14 -51.92 -0.42 0.22 16 25 H 0.08 0.56 7.76 -51.92 -0.40 0.16 16 26 H 0.15 1.57 5.90 -52.49 -0.31 1.26 16 27 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16 28 H 0.41 5.58 8.41 -40.82 -0.34 5.24 16 29 H 0.10 2.34 6.07 -51.93 -0.32 2.03 16 30 H 0.01 0.25 7.69 -51.93 -0.40 -0.15 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 33 H 0.15 2.99 6.49 -52.48 -0.34 2.65 16 LS Contribution 294.97 15.07 4.45 4.45 Total: -1.00 -30.75 294.97 -7.10 -37.86 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -3.69 Total: 3.99 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -0.92 Total: -4.35 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.44 Total: -41.89 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.07 Total: -12.76 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.19 SS G_CDS: -2.43 Total: -3.62 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.75 -7.10 -37.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891886261.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.887 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds