Wall clock time and date at job start Mon Mar 30 2020 00:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81400 * 103.00255 * 2 1 4 4 H 1.09003 * 109.47161 * 54.99353 * 3 2 1 5 5 C 1.52997 * 109.47094 * 294.99977 * 3 2 1 6 6 C 1.50700 * 109.47524 * 174.99762 * 3 2 1 7 7 O 1.21271 * 119.99690 * 24.99916 * 6 3 2 8 8 N 1.34780 * 120.00084 * 204.99675 * 6 3 2 9 9 C 1.37208 * 119.99877 * 4.99167 * 8 6 3 10 10 H 1.07999 * 120.00533 * 9.33129 * 9 8 6 11 11 C 1.38892 * 119.99829 * 189.33049 * 9 8 6 12 12 N 1.31412 * 120.00179 * 354.86101 * 11 9 8 13 13 Si 1.86797 * 120.00022 * 174.86142 * 11 9 8 14 14 H 1.48503 * 109.47517 * 60.00163 * 13 11 9 15 15 H 1.48506 * 109.47106 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47115 * 299.99717 * 13 11 9 17 17 C 1.39422 * 119.99633 * 184.98436 * 8 6 3 18 18 C 1.39061 * 119.70425 * 267.90157 * 17 8 6 19 19 C 1.38383 * 119.10500 * 179.76805 * 18 17 8 20 20 C 1.38827 * 118.48695 * 0.52384 * 19 18 17 21 21 C 1.38145 * 119.31292 * 359.45439 * 20 19 18 22 22 N 1.31881 * 120.85404 * 0.30451 * 21 20 19 23 23 H 1.09004 * 109.46944 * 60.00167 * 1 2 3 24 24 H 1.09000 * 109.47063 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47142 * 300.00613 * 1 2 3 26 26 H 1.09005 * 109.47218 * 300.00150 * 5 3 2 27 27 H 1.09005 * 109.47371 * 59.99571 * 5 3 2 28 28 H 1.09003 * 109.47456 * 179.97438 * 5 3 2 29 29 H 0.96999 * 120.00694 * 180.02562 * 12 11 9 30 30 H 1.08003 * 120.44506 * 0.02562 * 18 17 8 31 31 H 1.07996 * 120.75925 * 180.27650 * 19 18 17 32 32 H 1.08001 * 120.34583 * 179.72812 * 20 19 18 33 33 H 1.07998 * 119.57834 * 180.27199 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2542 0.8418 5 6 1.7429 2.4016 -1.3073 6 6 3.7142 1.9386 0.1239 7 8 4.4584 1.0532 -0.2408 8 7 4.2216 3.0756 0.6399 9 6 3.3807 4.0342 1.1464 10 1 2.3297 3.8193 1.2711 11 6 3.8812 5.2810 1.4989 12 7 5.1740 5.5099 1.4428 13 14 2.7165 6.6324 2.0525 14 1 1.9801 6.1864 3.2625 15 1 3.4945 7.8568 2.3705 16 1 1.7492 6.9284 0.9654 17 6 5.6010 3.2776 0.6590 18 6 6.3379 2.8961 1.7749 19 6 7.7069 3.0979 1.7787 20 6 8.2925 3.6868 0.6662 21 6 7.4992 4.0407 -0.4080 22 7 6.1973 3.8315 -0.3853 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 2.2354 1.9149 -2.1492 27 1 0.6636 2.2778 -1.3970 28 1 1.9877 3.4637 -1.3072 29 1 5.5236 6.3805 1.6893 30 1 5.8488 2.4446 2.6255 31 1 8.3056 2.8077 2.6294 32 1 9.3578 3.8623 0.6390 33 1 7.9509 4.4950 -1.2774 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892464302.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:56 Heat of formation + Delta-G solvation = 22.372229 kcal Electronic energy + Delta-G solvation = -18395.154471 eV Core-core repulsion = 15548.226268 eV Total energy + Delta-G solvation = -2846.928203 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.70947 -37.95399 -34.94969 -32.62071 -31.75533 -31.26112 -29.20331 -28.48327 -25.16881 -24.34755 -22.42130 -21.99466 -19.45800 -18.22223 -16.69245 -15.76979 -15.42204 -15.33861 -14.79701 -14.52447 -14.05476 -13.86141 -13.48493 -13.22940 -13.06858 -12.50599 -12.37177 -12.22479 -11.80068 -11.66864 -11.34370 -11.31843 -11.20086 -11.03863 -10.65815 -10.54979 -9.75122 -9.36000 -8.82830 -8.74270 -8.50072 -8.00611 -7.91899 -7.23155 -6.38092 -4.14236 1.97382 2.31050 2.45087 2.96515 3.04327 3.10271 3.12399 3.59871 3.92018 4.35800 4.94097 4.98413 5.31480 5.33547 5.47461 5.50257 5.66739 5.69600 5.77433 5.84710 6.00172 6.09913 6.24455 6.26713 6.46756 6.57830 6.72242 7.08872 7.12989 7.19788 7.38668 7.77065 8.24709 8.86780 9.15222 9.27781 9.62443 10.51321 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.008779 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.467201 B = 3188.712533 C = 4394.694389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.214 6.214 3 C -0.063 4.063 4 H 0.107 0.893 5 C -0.135 4.135 6 C 0.496 3.504 7 O -0.573 6.573 8 N -0.405 5.405 9 C -0.344 4.344 10 H 0.108 0.892 11 C 0.040 3.960 12 N -0.857 5.857 13 Si 0.932 3.068 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.271 1.271 17 C 0.467 3.533 18 C -0.150 4.150 19 C -0.074 4.074 20 C -0.208 4.208 21 C 0.116 3.884 22 N -0.478 5.478 23 H 0.073 0.927 24 H 0.096 0.904 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.276 0.724 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.654 -2.044 0.102 4.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.012 5.988 3 C -0.194 4.194 4 H 0.125 0.875 5 C -0.194 4.194 6 C 0.283 3.717 7 O -0.455 6.455 8 N -0.124 5.124 9 C -0.470 4.470 10 H 0.125 0.875 11 C -0.166 4.166 12 N -0.493 5.493 13 Si 0.758 3.242 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.196 1.196 17 C 0.240 3.760 18 C -0.172 4.172 19 C -0.101 4.101 20 C -0.229 4.229 21 C -0.043 4.043 22 N -0.190 5.190 23 H 0.092 0.908 24 H 0.115 0.885 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.994 -2.923 -0.730 4.247 hybrid contribution -0.878 1.957 1.203 2.460 sum -3.872 -0.966 0.473 4.019 Atomic orbital electron populations 1.23463 0.96846 1.05769 1.04547 1.87163 1.03635 1.10137 1.97903 1.23171 0.98608 0.94537 1.03110 0.87493 1.21869 1.00055 1.02352 0.95131 1.19127 0.88201 0.83189 0.81219 1.90618 1.60045 1.41841 1.53027 1.41064 1.02576 1.16573 1.52146 1.19675 0.92346 0.92110 1.42878 0.87457 1.25262 0.96452 0.98386 0.96483 1.69472 1.11167 1.23864 1.44830 0.85911 0.79539 0.79734 0.79063 1.19720 1.20711 1.19623 1.17300 0.83855 0.86728 0.88071 1.21608 0.94184 1.02696 0.98736 1.21068 0.94247 0.97295 0.97441 1.21666 0.99962 1.05132 0.96097 1.22076 0.88840 0.96548 0.96872 1.67090 1.11051 1.11358 1.29462 0.90780 0.88535 0.90918 0.91468 0.92581 0.90240 0.91209 0.86759 0.86588 0.86703 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 10.45 101.05 1.06 -0.67 16 2 S -0.21 -3.90 21.10 -107.50 -2.27 -6.17 16 3 C -0.06 -1.24 2.48 -27.88 -0.07 -1.31 16 4 H 0.11 2.02 6.16 -51.92 -0.32 1.70 16 5 C -0.13 -2.36 9.08 37.16 0.34 -2.02 16 6 C 0.50 12.22 6.71 -10.98 -0.07 12.14 16 7 O -0.57 -15.73 16.12 5.57 0.09 -15.64 16 8 N -0.40 -10.38 2.74 -60.71 -0.17 -10.54 16 9 C -0.34 -8.47 9.21 -14.90 -0.14 -8.60 16 10 H 0.11 2.40 5.74 -52.49 -0.30 2.10 16 11 C 0.04 0.99 5.45 -17.49 -0.10 0.90 16 12 N -0.86 -22.16 9.81 55.49 0.54 -21.62 16 13 Si 0.93 19.05 29.55 -169.99 -5.02 14.02 16 14 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 15 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 16 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 17 C 0.47 12.07 2.93 -154.64 -0.45 11.61 16 18 C -0.15 -3.54 9.47 -39.22 -0.37 -3.92 16 19 C -0.07 -1.49 10.17 -39.31 -0.40 -1.89 16 20 C -0.21 -4.00 10.11 -39.40 -0.40 -4.40 16 21 C 0.12 2.48 11.18 -17.56 -0.20 2.28 16 22 N -0.48 -12.20 9.70 -12.34 -0.12 -12.32 16 23 H 0.07 0.84 7.14 -51.92 -0.37 0.47 16 24 H 0.10 1.03 8.14 -51.92 -0.42 0.61 16 25 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.06 0.79 6.92 -51.93 -0.36 0.43 16 28 H 0.08 1.47 8.05 -51.93 -0.42 1.06 16 29 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.11 2.63 8.06 -52.48 -0.42 2.21 16 31 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 33 H 0.14 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 296.56 15.07 4.47 4.47 Total: -1.00 -30.86 296.56 -7.14 -38.00 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -3.86 Total: 5.68 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -0.80 Total: 4.12 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.26 Total: -44.49 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: 0.09 Total: -15.64 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.02 kcal Atomic # 16 Polarization: -3.90 SS G_CDS: -2.27 Total: -6.17 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.86 -7.14 -38.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464302.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.375 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds