Wall clock time and date at job start Mon Mar 30 2020 00:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81395 * 103.00236 * 2 1 4 4 H 1.09003 * 109.47311 * 305.00174 * 3 2 1 5 5 C 1.53001 * 109.47184 * 65.00156 * 3 2 1 6 6 C 1.50696 * 109.47564 * 185.00222 * 3 2 1 7 7 O 1.21279 * 119.99750 * 340.00067 * 6 3 2 8 8 N 1.34777 * 120.00743 * 160.00257 * 6 3 2 9 9 C 1.37214 * 119.99308 * 354.49472 * 8 6 3 10 10 H 1.08001 * 120.00310 * 5.60031 * 9 8 6 11 11 C 1.38901 * 119.99705 * 185.59190 * 9 8 6 12 12 N 1.31409 * 119.99825 * 353.00246 * 11 9 8 13 13 Si 1.86797 * 119.99688 * 173.00321 * 11 9 8 14 14 H 1.48498 * 109.47407 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46926 * 120.00021 * 13 11 9 16 16 H 1.48497 * 109.47337 * 240.00063 * 13 11 9 17 17 C 1.39427 * 120.00459 * 174.49886 * 8 6 3 18 18 C 1.39061 * 119.69506 * 272.94769 * 17 8 6 19 19 C 1.38381 * 119.09553 * 179.97438 * 18 17 8 20 20 C 1.38827 * 118.49346 * 359.97438 * 19 18 17 21 21 C 1.38144 * 119.30907 * 0.02562 * 20 19 18 22 22 N 1.31877 * 120.85612 * 359.74025 * 21 20 19 23 23 H 1.08999 * 109.46627 * 299.99594 * 1 2 3 24 24 H 1.08995 * 109.47057 * 59.99557 * 1 2 3 25 25 H 1.08992 * 109.47207 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46982 * 59.99816 * 5 3 2 27 27 H 1.08998 * 109.47231 * 299.99959 * 5 3 2 28 28 H 1.08996 * 109.47366 * 180.02562 * 5 3 2 29 29 H 0.97007 * 119.99705 * 179.97438 * 12 11 9 30 30 H 1.07992 * 120.45406 * 359.95294 * 18 17 8 31 31 H 1.07998 * 120.75322 * 180.02562 * 19 18 17 32 32 H 1.07996 * 120.34645 * 180.02562 * 20 19 18 33 33 H 1.08007 * 119.57006 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7429 2.4015 1.3074 6 6 3.7142 1.9386 -0.1239 7 8 4.4551 1.0199 0.1554 8 7 4.2253 3.1124 -0.5450 9 6 3.3873 4.1130 -0.9684 10 1 2.3175 3.9950 -0.8797 11 6 3.9151 5.2777 -1.5108 12 7 5.2132 5.4813 -1.4932 13 14 2.7795 6.5547 -2.2651 14 1 1.3729 6.0904 -2.1596 15 1 2.9310 7.8418 -1.5401 16 1 3.1316 6.7475 -3.6948 17 6 5.6055 3.3099 -0.5506 18 6 6.2390 3.7788 0.5951 19 6 7.6094 3.9699 0.5760 20 6 8.3017 3.6837 -0.5928 21 6 7.6077 3.2207 -1.6938 22 7 6.3017 3.0439 -1.6448 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 2.2355 1.9148 2.1492 27 1 0.6637 2.2779 1.3970 28 1 1.9877 3.4636 1.3072 29 1 5.5818 6.2946 -1.8724 30 1 5.6691 3.9914 1.4875 31 1 8.1287 4.3327 1.4507 32 1 9.3718 3.8215 -0.6407 33 1 8.1420 2.9971 -2.6054 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892464303.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:58 Heat of formation + Delta-G solvation = 3.100331 kcal Electronic energy + Delta-G solvation = -18402.691660 eV Core-core repulsion = 15554.927765 eV Total energy + Delta-G solvation = -2847.763895 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.49088 -39.71009 -36.80155 -34.22199 -33.57573 -32.96011 -30.84943 -29.54089 -27.04456 -25.87180 -24.10357 -23.68030 -21.26311 -19.99183 -18.39231 -17.34464 -17.15553 -17.01166 -16.51892 -16.19421 -15.71360 -15.31406 -14.95731 -14.81130 -14.30355 -14.11986 -13.88796 -13.70826 -13.43089 -13.16766 -12.97989 -12.87187 -12.72431 -12.54780 -12.35293 -12.07273 -11.63028 -10.74791 -10.64027 -10.47876 -10.29702 -9.78901 -9.66605 -8.64181 -8.19931 -6.02575 0.55248 0.66709 0.79289 1.36728 1.43858 1.56253 1.71874 1.84894 2.19633 2.63782 3.12354 3.26500 3.86925 4.00419 4.07681 4.18045 4.21145 4.40117 4.44113 4.51459 4.58739 4.67172 4.77870 4.81447 4.96061 5.06072 5.15432 5.34040 5.42820 5.48549 5.64839 6.05312 6.42467 7.00065 7.32444 7.55327 7.79383 8.66827 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016748 B = 0.008747 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.412870 B = 3200.211727 C = 4395.394680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.273 6.273 3 C -0.052 4.052 4 H 0.110 0.890 5 C -0.129 4.129 6 C 0.477 3.523 7 O -0.615 6.615 8 N -0.415 5.415 9 C -0.358 4.358 10 H 0.126 0.874 11 C -0.006 4.006 12 N -0.879 5.879 13 Si 0.999 3.001 14 H -0.249 1.249 15 H -0.277 1.277 16 H -0.288 1.288 17 C 0.436 3.564 18 C -0.179 4.179 19 C -0.069 4.069 20 C -0.196 4.196 21 C 0.098 3.902 22 N -0.522 5.522 23 H 0.093 0.907 24 H 0.084 0.916 25 H 0.118 0.882 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.269 0.731 30 H 0.108 0.892 31 H 0.157 0.843 32 H 0.163 0.837 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.841 -0.071 3.339 5.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.048 6.048 3 C -0.183 4.183 4 H 0.128 0.872 5 C -0.188 4.188 6 C 0.266 3.734 7 O -0.500 6.500 8 N -0.133 5.133 9 C -0.483 4.483 10 H 0.144 0.856 11 C -0.209 4.209 12 N -0.516 5.516 13 Si 0.822 3.178 14 H -0.172 1.172 15 H -0.203 1.203 16 H -0.215 1.215 17 C 0.210 3.790 18 C -0.201 4.201 19 C -0.095 4.095 20 C -0.216 4.216 21 C -0.060 4.060 22 N -0.235 5.235 23 H 0.112 0.888 24 H 0.103 0.897 25 H 0.137 0.863 26 H 0.077 0.923 27 H 0.113 0.887 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.126 0.874 31 H 0.174 0.826 32 H 0.180 0.820 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.135 -1.529 2.669 5.153 hybrid contribution -0.514 2.150 0.028 2.211 sum -4.649 0.621 2.697 5.410 Atomic orbital electron populations 1.23557 0.91182 1.07725 1.06106 1.87385 1.09777 1.09516 1.98112 1.22993 0.95090 0.95728 1.04520 0.87227 1.21897 1.02517 1.01222 0.93139 1.19954 0.90258 0.81425 0.81759 1.90567 1.61782 1.41037 1.56661 1.41409 1.02947 1.13033 1.55912 1.20248 0.91241 0.95225 1.41601 0.85641 1.26173 0.97771 1.00339 0.96652 1.69685 1.12172 1.26739 1.43003 0.84767 0.78748 0.77141 0.77118 1.17182 1.20309 1.21467 1.17668 0.84269 0.88559 0.88485 1.21711 0.96587 1.03412 0.98397 1.21561 0.92553 0.96175 0.99212 1.22134 1.02043 1.03543 0.93860 1.22721 0.88809 0.95430 0.99064 1.67059 1.09880 1.18230 1.28319 0.88799 0.89660 0.86341 0.92337 0.88660 0.90913 0.91936 0.87365 0.82552 0.81964 0.82130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 10.45 113.37 1.19 -1.41 16 2 S -0.27 -9.95 21.04 -56.49 -1.19 -11.14 16 3 C -0.05 -2.05 2.34 29.85 0.07 -1.98 16 4 H 0.11 4.17 6.60 -2.39 -0.02 4.15 16 5 C -0.13 -4.12 8.92 71.98 0.64 -3.48 16 6 C 0.48 24.25 6.76 87.66 0.59 24.85 16 7 O -0.61 -35.37 16.02 -3.03 -0.05 -35.42 16 8 N -0.42 -21.90 2.74 -464.37 -1.27 -23.17 16 9 C -0.36 -17.80 8.76 84.01 0.74 -17.07 16 10 H 0.13 5.58 5.56 -2.91 -0.02 5.56 16 11 C -0.01 -0.32 5.44 84.91 0.46 0.14 16 12 N -0.88 -46.12 9.79 21.65 0.21 -45.91 16 13 Si 1.00 39.01 29.56 68.60 2.03 41.04 16 14 H -0.25 -8.83 7.11 99.48 0.71 -8.13 16 15 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 16 H -0.29 -11.64 7.11 99.48 0.71 -10.94 16 17 C 0.44 23.18 2.92 132.90 0.39 23.57 16 18 C -0.18 -8.52 9.49 22.50 0.21 -8.30 16 19 C -0.07 -2.66 10.17 22.45 0.23 -2.44 16 20 C -0.20 -7.14 10.11 22.39 0.23 -6.91 16 21 C 0.10 4.21 11.18 84.66 0.95 5.15 16 22 N -0.52 -27.66 9.67 -192.95 -1.87 -29.53 16 23 H 0.09 1.73 7.14 -2.39 -0.02 1.71 16 24 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.09 2.28 6.92 -2.39 -0.02 2.26 16 28 H 0.07 2.43 7.35 -2.39 -0.02 2.41 16 29 H 0.27 13.64 8.31 -92.70 -0.77 12.87 16 30 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 31 H 0.16 4.64 8.06 -2.91 -0.02 4.61 16 32 H 0.16 4.30 8.06 -2.91 -0.02 4.28 16 33 H 0.16 5.72 8.06 -2.91 -0.02 5.69 16 Total: -1.00 -71.32 295.21 4.67 -66.65 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 1.12 Total: 25.36 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 5.69 Total: 12.12 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -2.92 Total: -98.61 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -0.05 Total: -35.42 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Atomic # 16 Polarization: -9.95 SS G_CDS: -1.19 Total: -11.14 kcal Total: -71.32 4.67 -66.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464303.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.746 kcal (2) G-P(sol) polarization free energy of solvation -71.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds