Wall clock time and date at job start Mon Mar 30 2020 01:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81405 * 103.00044 * 2 1 4 4 C 1.52995 * 109.47061 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47322 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99629 * 4.99584 * 5 4 3 7 7 N 1.34769 * 120.00298 * 184.99732 * 5 4 3 8 8 C 1.37208 * 120.00389 * 4.96749 * 7 5 4 9 9 H 1.08001 * 119.99905 * 50.16450 * 8 7 5 10 10 C 1.38894 * 120.00489 * 230.17352 * 8 7 5 11 11 N 1.31414 * 119.99700 * 7.35362 * 10 8 7 12 12 Si 1.86797 * 120.00334 * 187.36061 * 10 8 7 13 13 H 1.48497 * 109.47567 * 89.99294 * 12 10 8 14 14 H 1.48499 * 109.47247 * 209.99981 * 12 10 8 15 15 H 1.48501 * 109.46909 * 329.99581 * 12 10 8 16 16 C 1.39428 * 119.99914 * 184.97378 * 7 5 4 17 17 C 1.39075 * 119.69657 * 184.99852 * 16 7 5 18 18 C 1.38383 * 119.09774 * 180.02562 * 17 16 7 19 19 C 1.38829 * 118.49169 * 0.02562 * 18 17 16 20 20 C 1.38146 * 119.31415 * 0.24813 * 19 18 17 21 21 N 1.31888 * 120.84781 * 359.47880 * 20 19 18 22 22 H 1.08998 * 109.46774 * 299.99625 * 1 2 3 23 23 H 1.08998 * 109.46746 * 60.00126 * 1 2 3 24 24 H 1.08999 * 109.46688 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46890 * 60.00016 * 3 2 1 26 26 H 1.09003 * 109.47113 * 300.00057 * 3 2 1 27 27 H 1.09003 * 109.47160 * 60.00298 * 4 3 2 28 28 H 1.08993 * 109.47297 * 300.00281 * 4 3 2 29 29 H 0.96996 * 119.99886 * 174.99314 * 11 10 8 30 30 H 1.07997 * 120.45205 * 0.04036 * 17 16 7 31 31 H 1.07993 * 120.75081 * 180.02562 * 18 17 16 32 32 H 1.07999 * 120.34320 * 179.97438 * 19 18 17 33 33 H 1.07997 * 119.57851 * 179.74929 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.0814 3.4083 0.0013 6 8 3.1983 4.2345 0.0927 7 7 5.3659 3.8034 -0.0998 8 6 6.3551 2.8750 -0.3055 9 1 6.2559 2.1465 -1.0966 10 6 7.4840 2.8720 0.5036 11 7 7.5418 3.6599 1.5538 12 14 8.9203 1.7483 0.0990 13 1 9.8682 2.4591 -0.7961 14 1 9.6169 1.3642 1.3530 15 1 8.4174 0.5279 -0.5815 16 6 5.6897 5.1555 0.0049 17 6 7.0014 5.5680 -0.2037 18 6 7.3091 6.9129 -0.0962 19 6 6.2904 7.8022 0.2181 20 6 5.0107 7.3217 0.4178 21 7 4.7461 6.0347 0.3035 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8032 2.2371 0.8900 26 1 1.8032 2.2372 -0.8900 27 1 4.1617 1.4703 -0.8892 28 1 4.1609 1.4704 0.8908 29 1 8.2975 3.6061 2.1595 30 1 7.7693 4.8486 -0.4467 31 1 8.3186 7.2627 -0.2532 32 1 6.4971 8.8583 0.3099 33 1 4.2159 8.0092 0.6665 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892467369.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:45 Heat of formation + Delta-G solvation = 15.436898 kcal Electronic energy + Delta-G solvation = -17949.065430 eV Core-core repulsion = 15101.836488 eV Total energy + Delta-G solvation = -2847.228942 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.75386 -37.93891 -35.15284 -32.34988 -32.06663 -30.98985 -29.20385 -28.84637 -25.35413 -24.43928 -22.31895 -21.62796 -19.23882 -17.92330 -16.59624 -15.73719 -15.59884 -15.21347 -14.92760 -14.60819 -14.35426 -13.78371 -13.62445 -13.47388 -13.17240 -13.07815 -12.30447 -12.12208 -12.09543 -11.63370 -11.49503 -11.38810 -11.09114 -10.80398 -10.75933 -10.46558 -9.80196 -9.39895 -9.03307 -8.91662 -8.68610 -7.93480 -7.52200 -7.02559 -6.46383 -4.54310 1.83619 2.24250 2.44935 2.77594 3.01295 3.10058 3.12673 3.76404 3.92960 4.39878 4.69664 5.16504 5.17400 5.19096 5.35178 5.41586 5.53508 5.70767 5.72125 5.87433 6.04898 6.10954 6.32426 6.36551 6.46866 6.51506 6.84592 7.10385 7.19774 7.27132 7.55605 7.92977 8.18869 8.80419 8.88256 9.31187 9.75483 10.42931 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.007007 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.477834 B = 3995.321260 C = 5490.553386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.275 6.275 3 C -0.061 4.061 4 C -0.103 4.103 5 C 0.498 3.502 6 O -0.526 6.526 7 N -0.385 5.385 8 C -0.362 4.362 9 H 0.099 0.901 10 C 0.052 3.948 11 N -0.845 5.845 12 Si 0.920 3.080 13 H -0.272 1.272 14 H -0.279 1.279 15 H -0.263 1.263 16 C 0.386 3.614 17 C -0.141 4.141 18 C -0.081 4.081 19 C -0.237 4.237 20 C 0.105 3.895 21 N -0.496 5.496 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.276 0.724 30 H 0.136 0.864 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.704 -2.237 -2.647 5.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.049 6.049 3 C -0.209 4.209 4 C -0.144 4.144 5 C 0.285 3.715 6 O -0.403 6.403 7 N -0.097 5.097 8 C -0.490 4.490 9 H 0.117 0.883 10 C -0.158 4.158 11 N -0.477 5.477 12 Si 0.745 3.255 13 H -0.197 1.197 14 H -0.205 1.205 15 H -0.188 1.188 16 C 0.155 3.845 17 C -0.165 4.165 18 C -0.107 4.107 19 C -0.259 4.259 20 C -0.053 4.053 21 N -0.211 5.211 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.115 0.885 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.087 0.913 30 H 0.154 0.846 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.256 -3.036 -2.331 5.724 hybrid contribution 1.031 0.805 0.015 1.308 sum -3.226 -2.231 -2.316 4.555 Atomic orbital electron populations 1.23323 0.94718 1.05944 1.04841 1.86774 1.06792 1.13223 1.98136 1.23182 1.00070 0.91814 1.05871 1.21102 0.92371 0.95369 1.05582 1.20698 0.83042 0.90116 0.77636 1.90659 1.46853 1.54436 1.48322 1.41137 1.06193 1.02250 1.60156 1.19439 0.98893 1.12658 1.17995 0.88321 1.25630 0.99622 0.96247 0.94282 1.69964 1.31334 1.35212 1.11157 0.86028 0.80648 0.80407 0.78426 1.19747 1.20469 1.18762 1.18809 0.89063 0.85276 0.91342 1.21514 0.96916 0.95302 1.02804 1.21156 0.98332 0.93161 0.98043 1.21636 0.94991 0.99559 1.09716 1.22257 0.94911 0.91598 0.96567 1.67583 1.35246 1.02191 1.16122 0.90631 0.90672 0.88466 0.89531 0.89853 0.88715 0.88138 0.91298 0.84621 0.86680 0.86915 0.84535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 10.76 101.05 1.09 -0.22 16 2 S -0.27 -4.10 22.38 -107.50 -2.41 -6.51 16 3 C -0.06 -1.03 5.24 37.15 0.19 -0.84 16 4 C -0.10 -2.01 4.62 -27.89 -0.13 -2.14 16 5 C 0.50 12.01 7.58 -10.99 -0.08 11.93 16 6 O -0.53 -13.74 14.28 5.56 0.08 -13.66 16 7 N -0.39 -9.81 2.68 -60.71 -0.16 -9.98 16 8 C -0.36 -8.75 7.67 -14.90 -0.11 -8.86 16 9 H 0.10 2.23 7.36 -52.49 -0.39 1.84 16 10 C 0.05 1.23 3.59 -17.49 -0.06 1.17 16 11 N -0.84 -21.59 11.12 55.49 0.62 -20.97 16 12 Si 0.92 18.22 29.56 -169.99 -5.03 13.19 16 13 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 14 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 15 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 16 C 0.39 9.95 6.63 -154.64 -1.02 8.93 16 17 C -0.14 -3.34 7.61 -39.22 -0.30 -3.64 16 18 C -0.08 -1.64 10.17 -39.31 -0.40 -2.04 16 19 C -0.24 -4.55 10.11 -39.40 -0.40 -4.95 16 20 C 0.11 2.25 11.18 -17.56 -0.20 2.05 16 21 N -0.50 -12.64 7.92 -12.34 -0.10 -12.73 16 22 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 25 H 0.09 1.52 8.04 -51.92 -0.42 1.10 16 26 H 0.08 1.41 8.14 -51.92 -0.42 0.98 16 27 H 0.09 1.75 7.54 -51.93 -0.39 1.36 16 28 H 0.10 2.00 8.14 -51.93 -0.42 1.57 16 29 H 0.28 6.69 8.32 -40.82 -0.34 6.35 16 30 H 0.14 3.26 5.55 -52.49 -0.29 2.97 16 31 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 32 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.14 2.46 8.06 -52.49 -0.42 2.03 16 LS Contribution 296.10 15.07 4.46 4.46 Total: -1.00 -29.40 296.10 -7.96 -37.36 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -4.00 Total: 7.45 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -1.42 Total: 1.38 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.36 Total: -43.68 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.08 Total: -13.66 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Atomic # 16 Polarization: -4.10 SS G_CDS: -2.41 Total: -6.51 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.40 -7.96 -37.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892467369.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.801 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds