Wall clock time and date at job start Mon Mar 30 2020 01:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81405 * 103.00044 * 2 1 4 4 C 1.52995 * 109.47061 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47322 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99629 * 4.99584 * 5 4 3 7 7 N 1.34769 * 120.00298 * 184.99732 * 5 4 3 8 8 C 1.37208 * 120.00389 * 4.96749 * 7 5 4 9 9 H 1.08001 * 119.99905 * 50.16450 * 8 7 5 10 10 C 1.38894 * 120.00489 * 230.17352 * 8 7 5 11 11 N 1.31414 * 119.99700 * 7.35362 * 10 8 7 12 12 Si 1.86797 * 120.00334 * 187.36061 * 10 8 7 13 13 H 1.48497 * 109.47567 * 89.99294 * 12 10 8 14 14 H 1.48499 * 109.47247 * 209.99981 * 12 10 8 15 15 H 1.48501 * 109.46909 * 329.99581 * 12 10 8 16 16 C 1.39428 * 119.99914 * 184.97378 * 7 5 4 17 17 C 1.39075 * 119.69657 * 184.99852 * 16 7 5 18 18 C 1.38383 * 119.09774 * 180.02562 * 17 16 7 19 19 C 1.38829 * 118.49169 * 0.02562 * 18 17 16 20 20 C 1.38146 * 119.31415 * 0.24813 * 19 18 17 21 21 N 1.31888 * 120.84781 * 359.47880 * 20 19 18 22 22 H 1.08998 * 109.46774 * 299.99625 * 1 2 3 23 23 H 1.08998 * 109.46746 * 60.00126 * 1 2 3 24 24 H 1.08999 * 109.46688 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46890 * 60.00016 * 3 2 1 26 26 H 1.09003 * 109.47113 * 300.00057 * 3 2 1 27 27 H 1.09003 * 109.47160 * 60.00298 * 4 3 2 28 28 H 1.08993 * 109.47297 * 300.00281 * 4 3 2 29 29 H 0.96996 * 119.99886 * 174.99314 * 11 10 8 30 30 H 1.07997 * 120.45205 * 0.04036 * 17 16 7 31 31 H 1.07993 * 120.75081 * 180.02562 * 18 17 16 32 32 H 1.07999 * 120.34320 * 179.97438 * 19 18 17 33 33 H 1.07997 * 119.57851 * 179.74929 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.0814 3.4083 0.0013 6 8 3.1983 4.2345 0.0927 7 7 5.3659 3.8034 -0.0998 8 6 6.3551 2.8750 -0.3055 9 1 6.2559 2.1465 -1.0966 10 6 7.4840 2.8720 0.5036 11 7 7.5418 3.6599 1.5538 12 14 8.9203 1.7483 0.0990 13 1 9.8682 2.4591 -0.7961 14 1 9.6169 1.3642 1.3530 15 1 8.4174 0.5279 -0.5815 16 6 5.6897 5.1555 0.0049 17 6 7.0014 5.5680 -0.2037 18 6 7.3091 6.9129 -0.0962 19 6 6.2904 7.8022 0.2181 20 6 5.0107 7.3217 0.4178 21 7 4.7461 6.0347 0.3035 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8032 2.2371 0.8900 26 1 1.8032 2.2372 -0.8900 27 1 4.1617 1.4703 -0.8892 28 1 4.1609 1.4704 0.8908 29 1 8.2975 3.6061 2.1595 30 1 7.7693 4.8486 -0.4467 31 1 8.3186 7.2627 -0.2532 32 1 6.4971 8.8583 0.3099 33 1 4.2159 8.0092 0.6665 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892467369.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:45 Heat of formation + Delta-G solvation = -0.481101 kcal Electronic energy + Delta-G solvation = -17949.755686 eV Core-core repulsion = 15101.836488 eV Total energy + Delta-G solvation = -2847.919198 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.52549 -39.69272 -36.96800 -34.00110 -33.79423 -32.72570 -30.85661 -29.77998 -27.19080 -26.02653 -24.00513 -23.29895 -21.03432 -19.65839 -18.27087 -17.48520 -16.95446 -16.84464 -16.58699 -16.23119 -15.98032 -15.31319 -15.22949 -14.82431 -14.42298 -14.37611 -13.89001 -13.69967 -13.66294 -13.31891 -13.07650 -12.82866 -12.72519 -12.38995 -12.31123 -12.03816 -11.17507 -10.98847 -10.83904 -10.68614 -10.42642 -9.70788 -8.82345 -8.70527 -8.25661 -6.41459 0.53250 0.65648 0.75743 1.44241 1.47735 1.59247 1.64641 2.00389 2.24779 2.70342 2.91839 3.44089 3.82340 3.89513 3.97330 4.21653 4.26373 4.34123 4.38042 4.55458 4.58879 4.66132 4.77610 4.82972 4.88843 4.96009 5.16827 5.36225 5.42805 5.59277 5.88489 6.14101 6.38174 6.97471 7.13156 7.49863 7.96085 8.63904 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.007007 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.477834 B = 3995.321260 C = 5490.553386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.293 6.293 3 C -0.052 4.052 4 C -0.089 4.089 5 C 0.481 3.519 6 O -0.557 6.557 7 N -0.401 5.401 8 C -0.376 4.376 9 H 0.108 0.892 10 C 0.019 3.981 11 N -0.880 5.880 12 Si 0.986 3.014 13 H -0.266 1.266 14 H -0.282 1.282 15 H -0.253 1.253 16 C 0.349 3.651 17 C -0.160 4.160 18 C -0.079 4.079 19 C -0.217 4.217 20 C 0.088 3.912 21 N -0.535 5.535 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.121 0.879 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.276 0.724 30 H 0.124 0.876 31 H 0.152 0.848 32 H 0.161 0.839 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.275 -2.166 -3.098 5.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.067 6.067 3 C -0.200 4.200 4 C -0.130 4.130 5 C 0.270 3.730 6 O -0.436 6.436 7 N -0.113 5.113 8 C -0.502 4.502 9 H 0.125 0.875 10 C -0.188 4.188 11 N -0.513 5.513 12 Si 0.808 3.192 13 H -0.191 1.191 14 H -0.207 1.207 15 H -0.177 1.177 16 C 0.119 3.881 17 C -0.184 4.184 18 C -0.105 4.105 19 C -0.239 4.239 20 C -0.070 4.070 21 N -0.251 5.251 22 H 0.101 0.899 23 H 0.104 0.896 24 H 0.139 0.861 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.121 0.879 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.142 0.858 31 H 0.170 0.830 32 H 0.178 0.822 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.826 -2.960 -2.797 5.588 hybrid contribution 0.837 0.904 0.160 1.242 sum -2.989 -2.057 -2.636 4.485 Atomic orbital electron populations 1.23453 0.90827 1.07772 1.05781 1.86780 1.11033 1.10728 1.98189 1.22953 0.98119 0.93756 1.05202 1.20988 0.94269 0.92240 1.05485 1.21472 0.82655 0.91799 0.77061 1.90606 1.47458 1.55673 1.49911 1.41454 1.06789 1.02758 1.60278 1.19778 0.99160 1.12819 1.18470 0.87491 1.26390 1.01530 0.97228 0.93619 1.70101 1.32066 1.36874 1.12294 0.85031 0.77322 0.78816 0.78020 1.19090 1.20749 1.17695 1.19180 0.90118 0.85697 0.93077 1.21545 0.95910 0.96811 1.04113 1.21636 1.00469 0.91947 0.96440 1.22092 0.93501 1.01692 1.06576 1.22909 0.97078 0.90803 0.96207 1.67544 1.36280 1.03951 1.17333 0.89885 0.89609 0.86077 0.90640 0.90052 0.87854 0.88818 0.91436 0.85797 0.83040 0.82164 0.81688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.17 10.76 113.37 1.22 -0.95 16 2 S -0.29 -8.46 22.38 -56.49 -1.26 -9.73 16 3 C -0.05 -1.78 5.24 71.98 0.38 -1.41 16 4 C -0.09 -3.58 4.62 29.85 0.14 -3.44 16 5 C 0.48 24.17 7.58 87.66 0.66 24.84 16 6 O -0.56 -30.36 14.28 -3.03 -0.04 -30.41 16 7 N -0.40 -21.10 2.68 -464.37 -1.24 -22.34 16 8 C -0.38 -18.52 7.67 84.01 0.64 -17.87 16 9 H 0.11 4.91 7.36 -2.91 -0.02 4.88 16 10 C 0.02 0.89 3.59 84.91 0.31 1.19 16 11 N -0.88 -45.83 11.12 21.65 0.24 -45.59 16 12 Si 0.99 37.20 29.56 68.60 2.03 39.23 16 13 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 14 H -0.28 -10.68 7.11 99.48 0.71 -9.98 16 15 H -0.25 -9.06 7.11 99.48 0.71 -8.36 16 16 C 0.35 18.45 6.63 132.91 0.88 19.33 16 17 C -0.16 -7.60 7.61 22.51 0.17 -7.43 16 18 C -0.08 -3.05 10.17 22.45 0.23 -2.83 16 19 C -0.22 -7.72 10.11 22.39 0.23 -7.50 16 20 C 0.09 3.66 11.18 84.66 0.95 4.61 16 21 N -0.53 -27.76 7.92 -192.95 -1.53 -29.29 16 22 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.07 2.73 8.04 -2.39 -0.02 2.71 16 26 H 0.08 2.79 8.14 -2.39 -0.02 2.78 16 27 H 0.10 3.90 7.54 -2.39 -0.02 3.88 16 28 H 0.09 3.86 8.14 -2.39 -0.02 3.84 16 29 H 0.28 13.56 8.32 -92.71 -0.77 12.79 16 30 H 0.12 6.06 5.55 -2.91 -0.02 6.05 16 31 H 0.15 4.65 8.06 -2.91 -0.02 4.62 16 32 H 0.16 4.16 8.06 -2.91 -0.02 4.14 16 33 H 0.17 5.65 8.06 -2.91 -0.02 5.62 16 Total: -1.00 -65.81 296.10 5.10 -60.71 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 1.11 Total: 28.87 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 5.80 Total: 8.54 kcal Atomic # 7 Polarization: -94.69 SS G_CDS: -2.53 Total: -97.22 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.04 Total: -30.41 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.26 Total: -9.73 kcal Total: -65.81 5.10 -60.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892467369.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.231 kcal (2) G-P(sol) polarization free energy of solvation -65.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds