Wall clock time and date at job start Mon Mar 30 2020 00:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.46679 * 240.00551 * 2 1 3 5 5 H 1.08001 * 120.00089 * 240.00065 * 4 2 1 6 6 C 1.37882 * 120.00151 * 59.99898 * 4 2 1 7 7 N 1.31511 * 119.99699 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99903 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47331 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47191 * 120.00447 * 8 6 4 11 11 H 1.48504 * 109.47058 * 239.99997 * 8 6 4 12 12 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 13 13 O 1.21303 * 120.00012 * 119.99872 * 12 2 1 14 14 N 1.34777 * 119.99538 * 299.99218 * 12 2 1 15 15 C 1.40467 * 119.99822 * 179.72516 * 14 12 2 16 16 N 1.32055 * 122.83091 * 359.97438 * 15 14 12 17 17 C 1.29067 * 117.09851 * 179.81989 * 16 15 14 18 18 S 1.70948 * 110.29115 * 0.43082 * 17 16 15 19 19 C 1.34155 * 122.83483 * 180.27915 * 15 14 12 20 20 C 1.50705 * 126.03794 * 359.92562 * 19 15 14 21 21 C 1.52999 * 117.49844 * 188.74844 * 20 19 15 22 22 C 1.53007 * 117.49658 * 120.09081 * 20 19 15 23 23 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 24 24 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 26 26 H 0.97004 * 119.99534 * 179.97438 * 7 6 4 27 27 H 0.97001 * 120.00485 * 0.02562 * 14 12 2 28 28 H 1.07999 * 124.85472 * 180.15862 * 17 16 15 29 29 H 1.09002 * 115.55215 * 334.41912 * 20 19 15 30 30 H 1.09001 * 117.49726 * 359.97438 * 21 20 19 31 31 H 1.09002 * 117.49952 * 145.02427 * 21 20 19 32 32 H 1.09001 * 117.49257 * 214.98124 * 22 20 19 33 33 H 1.09001 * 117.49915 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9426 0.8299 -2.6033 8 14 2.3222 -1.1192 -4.0081 9 1 3.1481 -2.2853 -3.6041 10 1 1.1675 -1.5861 -4.8167 11 1 3.1470 -0.1854 -4.8162 12 6 2.0324 -0.7106 1.2303 13 8 2.7297 -1.6969 1.1188 14 7 1.7068 -0.2502 2.4545 15 6 2.1703 -0.9159 3.6013 16 7 2.9269 -1.9967 3.5451 17 6 3.2931 -2.5171 4.6680 18 16 2.6523 -1.6196 5.9743 19 6 1.8767 -0.5107 4.8461 20 6 1.0334 0.6828 5.2143 21 6 0.9900 1.0892 6.6886 22 6 -0.2289 0.4279 6.0405 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 0.7085 1.1615 -3.4843 27 1 1.1490 0.5383 2.5436 28 1 3.9119 -3.3965 4.7681 29 1 0.9964 1.4795 4.4713 30 1 1.5710 0.4931 7.3923 31 1 0.9239 2.1533 6.9157 32 1 -1.0963 1.0573 5.8412 33 1 -0.4497 -0.6030 6.3173 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893263572.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:11 Heat of formation + Delta-G solvation = 41.875121 kcal Electronic energy + Delta-G solvation = -17654.708895 eV Core-core repulsion = 14808.626401 eV Total energy + Delta-G solvation = -2846.082494 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.32032 -38.13265 -37.22039 -33.80854 -33.75054 -30.60024 -29.14667 -25.37913 -25.16128 -23.09135 -22.54566 -21.99880 -20.26694 -19.19649 -17.56280 -17.07777 -16.16964 -15.48994 -15.06655 -14.93735 -14.56550 -14.39997 -13.93540 -13.59939 -13.03034 -12.53055 -12.19432 -11.83628 -11.72953 -11.60330 -11.09800 -11.04195 -10.77281 -10.70493 -10.56862 -10.39397 -10.06506 -9.98181 -9.42569 -9.02352 -9.00102 -8.56507 -8.32297 -7.69985 -6.05657 -4.08741 0.80641 1.44261 1.79768 2.91658 3.32257 3.39631 3.46992 3.56509 3.71482 3.95413 4.40907 4.46658 4.64382 4.71095 4.84634 5.26287 5.28147 5.44259 5.46980 5.66173 5.76249 5.89150 5.94369 6.12986 6.55729 6.77116 6.84955 6.99367 7.40023 7.56509 7.75481 7.98832 8.14916 8.40900 9.00808 9.15033 9.57092 11.02139 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.032141 B = 0.004883 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.939652 B = 5732.383572 C = 6462.841305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.034 3.966 3 H 0.055 0.945 4 C -0.501 4.501 5 H 0.076 0.924 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.901 3.099 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.508 3.492 13 O -0.485 6.485 14 N -0.659 5.659 15 C 0.326 3.674 16 N -0.441 5.441 17 C 0.039 3.961 18 S 0.103 5.897 19 C -0.260 4.260 20 C -0.068 4.068 21 C -0.173 4.173 22 C -0.170 4.170 23 H 0.096 0.904 24 H 0.032 0.968 25 H 0.012 0.988 26 H 0.261 0.739 27 H 0.413 0.587 28 H 0.200 0.800 29 H 0.119 0.881 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.191 0.582 18.974 19.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.012 3.988 3 H 0.073 0.927 4 C -0.539 4.539 5 H 0.094 0.906 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.297 3.703 13 O -0.354 6.354 14 N -0.308 5.308 15 C 0.101 3.899 16 N -0.156 5.156 17 C -0.261 4.261 18 S 0.352 5.648 19 C -0.385 4.385 20 C -0.089 4.089 21 C -0.211 4.211 22 C -0.207 4.207 23 H 0.114 0.886 24 H 0.052 0.948 25 H 0.031 0.969 26 H 0.070 0.930 27 H 0.250 0.750 28 H 0.217 0.783 29 H 0.137 0.863 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.488 -0.418 19.132 19.143 hybrid contribution -0.230 0.361 -1.537 1.595 sum -0.718 -0.057 17.595 17.609 Atomic orbital electron populations 1.21771 0.96333 1.00031 1.01055 1.18915 0.94262 0.96883 0.88702 0.92728 1.21171 1.31055 1.12875 0.88822 0.90621 1.24943 0.95047 0.95056 0.99143 1.69875 1.37082 1.23104 1.23529 0.86374 0.78637 0.79804 0.82335 1.19503 1.21008 1.21012 1.22409 0.79182 0.85016 0.83676 1.90641 1.34496 1.24848 1.85366 1.44175 1.52658 1.30716 1.03290 1.17461 0.94892 0.90797 0.86718 1.66131 1.12401 1.09168 1.27904 1.28328 1.03900 1.04389 0.89480 1.83538 1.46334 1.21827 1.13052 1.24100 1.14224 1.06277 0.93914 1.20051 0.98317 0.95446 0.95077 1.23065 1.02015 1.01602 0.94411 1.23119 0.91963 1.02276 1.03364 0.88572 0.94832 0.96933 0.92958 0.75019 0.78304 0.86296 0.88682 0.88075 0.88076 0.88561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.87 37.16 0.33 -2.74 16 2 C 0.03 0.85 2.64 -92.92 -0.25 0.60 16 3 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 4 C -0.50 -14.31 8.37 -34.44 -0.29 -14.60 16 5 H 0.08 2.30 6.75 -52.49 -0.35 1.95 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.08 11.32 55.43 0.63 -24.45 16 8 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 9 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.51 12.10 7.12 -10.99 -0.08 12.02 16 13 O -0.48 -13.24 13.96 5.54 0.08 -13.16 16 14 N -0.66 -12.56 5.33 -12.35 -0.07 -12.63 16 15 C 0.33 5.89 7.37 -155.63 -1.15 4.74 16 16 N -0.44 -8.45 8.43 -14.69 -0.12 -8.57 16 17 C 0.04 0.55 12.22 51.60 0.63 1.18 16 18 S 0.10 1.18 22.15 -107.50 -2.38 -1.20 16 19 C -0.26 -3.67 6.22 -35.74 -0.22 -3.89 16 20 C -0.07 -0.77 5.83 -91.77 -0.54 -1.30 16 21 C -0.17 -1.54 10.07 -26.69 -0.27 -1.81 16 22 C -0.17 -1.59 10.24 -26.69 -0.27 -1.86 16 23 H 0.10 2.41 6.07 -51.93 -0.32 2.10 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.01 0.23 7.56 -51.93 -0.39 -0.17 16 26 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.41 6.53 7.08 -40.82 -0.29 6.24 16 28 H 0.20 2.03 8.06 -52.49 -0.42 1.61 16 29 H 0.12 1.26 7.44 -51.93 -0.39 0.87 16 30 H 0.09 0.83 7.34 -51.93 -0.38 0.45 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 295.61 15.07 4.45 4.45 Total: -1.00 -33.24 295.61 -8.41 -41.65 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -3.79 Total: 3.12 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -2.19 Total: -6.13 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.44 Total: -45.66 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.16 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.38 Total: -1.20 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.24 -8.41 -41.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893263572.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.526 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds