Wall clock time and date at job start Mon Mar 30 2020 00:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38547 * 120.38176 * 2 1 4 4 C 1.39244 * 118.36176 * 180.26136 * 3 2 1 5 5 N 1.39947 * 120.48934 * 179.73481 * 4 3 2 6 6 C 1.34774 * 120.00277 * 327.17437 * 5 4 3 7 7 O 1.21281 * 119.99743 * 354.73431 * 6 5 4 8 8 C 1.50700 * 119.99939 * 174.73878 * 6 5 4 9 9 S 1.81004 * 109.46940 * 179.97438 * 8 6 5 10 10 C 1.76198 * 99.99896 * 179.97438 * 9 8 6 11 11 H 1.08002 * 120.00023 * 359.97438 * 10 9 8 12 12 C 1.38795 * 119.99806 * 180.02562 * 10 9 8 13 13 N 1.31635 * 120.00009 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 120.00371 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.46979 * 90.00254 * 14 12 10 16 16 H 1.48503 * 109.47489 * 210.00279 * 14 12 10 17 17 H 1.48503 * 109.47030 * 330.00721 * 14 12 10 18 18 C 1.38891 * 119.01623 * 359.46659 * 4 3 2 19 19 N 1.31777 * 120.66608 * 0.27269 * 18 4 3 20 20 C 1.31887 * 121.79951 * 359.97438 * 19 18 4 21 21 C 1.50698 * 119.54201 * 180.02562 * 20 19 18 22 22 H 1.09001 * 109.47086 * 270.27744 * 1 2 3 23 23 H 1.08998 * 109.47258 * 30.27573 * 1 2 3 24 24 H 1.09000 * 109.47190 * 150.27987 * 1 2 3 25 25 H 1.07998 * 120.82402 * 0.02970 * 3 2 1 26 26 H 0.97006 * 119.99504 * 147.17070 * 5 4 3 27 27 H 1.08996 * 109.47157 * 59.99681 * 8 6 5 28 28 H 1.09004 * 109.47127 * 299.99633 * 8 6 5 29 29 H 0.96996 * 120.00340 * 179.97438 * 13 12 10 30 30 H 1.08004 * 119.66209 * 180.29558 * 18 4 3 31 31 H 1.09003 * 109.47153 * 90.00597 * 21 20 19 32 32 H 1.09006 * 109.47023 * 210.00089 * 21 20 19 33 33 H 1.09001 * 109.47399 * 330.00092 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1952 0.0000 4 6 3.5993 1.1461 -0.0056 5 7 4.3514 2.3263 -0.0114 6 6 3.8839 3.4203 -0.6447 7 8 2.8587 3.3559 -1.2896 8 6 4.6350 4.7234 -0.5517 9 16 3.7615 5.9924 -1.5019 10 6 4.8268 7.3685 -1.2262 11 1 5.7112 7.2533 -0.6170 12 6 4.5289 8.6008 -1.7911 13 7 5.3251 9.6288 -1.5856 14 14 2.9991 8.8003 -2.8441 15 1 1.8548 9.1966 -1.9846 16 1 3.2360 9.8499 -3.8677 17 1 2.6901 7.5132 -3.5172 18 6 4.2298 -0.0914 0.0004 19 7 3.5249 -1.2048 0.0058 20 6 2.2061 -1.1925 0.0063 21 6 1.4508 -2.4965 0.0131 22 1 -0.3633 0.0050 1.0277 23 1 -0.3634 0.8875 -0.5181 24 1 -0.3633 -0.8925 -0.5095 25 1 1.6875 2.1417 0.0005 26 1 5.2092 2.3569 0.4405 27 1 5.6388 4.5938 -0.9561 28 1 4.7007 5.0313 0.4919 29 1 5.1172 10.4899 -1.9806 30 1 5.3086 -0.1416 0.0010 31 1 1.2690 -2.8057 1.0425 32 1 0.4983 -2.3674 -0.5010 33 1 2.0386 -3.2596 -0.4971 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893819391.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:13 Heat of formation + Delta-G solvation = -8.998698 kcal Electronic energy + Delta-G solvation = -16939.506757 eV Core-core repulsion = 14091.218208 eV Total energy + Delta-G solvation = -2848.288548 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.92467 -39.24014 -35.35233 -33.82199 -32.50808 -32.07523 -29.67583 -27.85913 -26.73174 -25.67574 -23.03539 -22.03605 -20.45732 -18.25116 -17.23984 -17.01617 -16.42874 -15.95596 -15.09640 -15.05139 -14.81649 -14.15313 -13.74252 -13.52106 -13.30373 -13.04825 -12.97655 -12.86183 -12.78034 -12.35367 -12.14719 -11.62827 -11.34568 -11.06898 -10.79422 -10.70778 -10.08891 -9.88348 -9.56374 -9.22775 -9.07076 -8.61270 -8.23467 -7.01696 -6.35392 -4.08776 0.92255 1.20353 2.56839 2.69390 3.13307 3.27781 3.44468 3.51314 3.67101 4.23278 4.26578 4.49959 4.63294 4.78522 4.81090 4.86278 5.03596 5.13918 5.27807 5.34853 5.44432 5.47912 5.57099 5.60293 5.73846 5.79045 5.87452 6.01573 6.15957 6.27587 6.73006 7.26324 7.86591 7.87492 8.16210 8.35040 9.10254 10.73785 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.042957 B = 0.003871 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.654307 B = 7231.237953 C = 7749.099733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.115 4.115 3 C -0.080 4.080 4 C 0.107 3.893 5 N -0.674 5.674 6 C 0.531 3.469 7 O -0.498 6.498 8 C -0.125 4.125 9 S -0.138 6.138 10 C -0.523 4.523 11 H 0.089 0.911 12 C 0.097 3.903 13 N -0.879 5.879 14 Si 0.856 3.144 15 H -0.267 1.267 16 H -0.273 1.273 17 H -0.235 1.235 18 C 0.069 3.931 19 N -0.464 5.464 20 C 0.097 3.903 21 C -0.102 4.102 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.148 0.852 26 H 0.414 0.586 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.272 0.728 30 H 0.157 0.843 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.510 -20.337 5.234 21.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.117 4.117 3 C -0.108 4.108 4 C 0.010 3.990 5 N -0.321 5.321 6 C 0.318 3.682 7 O -0.370 6.370 8 C -0.275 4.275 9 S 0.088 5.912 10 C -0.671 4.671 11 H 0.107 0.893 12 C -0.112 4.112 13 N -0.515 5.515 14 Si 0.681 3.319 15 H -0.191 1.191 16 H -0.198 1.198 17 H -0.160 1.160 18 C -0.091 4.091 19 N -0.172 5.172 20 C -0.041 4.041 21 C -0.159 4.159 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.166 0.834 26 H 0.250 0.750 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.174 0.826 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.716 -20.963 4.125 22.396 hybrid contribution 0.881 1.472 0.538 1.798 sum -5.835 -19.490 4.663 20.873 Atomic orbital electron populations 1.20827 0.90104 1.03451 1.02643 1.20618 0.97604 0.92745 1.00777 1.21573 0.92475 0.99412 0.97362 1.18821 0.91924 0.87232 1.01021 1.43565 1.23514 1.09675 1.55338 1.20564 0.85564 0.84529 0.77517 1.90714 1.23892 1.84136 1.38308 1.23292 1.03411 0.94680 1.06155 1.84815 1.36570 1.04247 1.65546 1.22288 1.12166 0.94409 1.38231 0.89254 1.24709 0.96748 0.94565 0.95226 1.69932 1.37043 1.01177 1.43328 0.86743 0.83204 0.80618 0.81328 1.19149 1.19821 1.15950 1.22494 1.00135 0.86081 1.00405 1.67424 1.07741 1.30082 1.11953 1.21036 0.89650 0.95017 0.98396 1.20712 0.99252 0.93099 1.02811 0.90797 0.90969 0.90751 0.83438 0.75014 0.87944 0.87904 0.91835 0.82603 0.90675 0.90517 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.62 36.01 0.35 -0.66 16 2 C -0.11 -1.37 5.89 -104.51 -0.62 -1.99 16 3 C -0.08 -1.12 8.45 -39.09 -0.33 -1.45 16 4 C 0.11 1.42 6.31 -83.54 -0.53 0.90 16 5 N -0.67 -8.51 5.35 -9.77 -0.05 -8.57 16 6 C 0.53 8.92 7.61 -10.99 -0.08 8.83 16 7 O -0.50 -10.09 13.56 5.56 0.08 -10.02 16 8 C -0.12 -2.26 6.16 36.01 0.22 -2.04 16 9 S -0.14 -3.36 18.55 -107.50 -1.99 -5.36 16 10 C -0.52 -14.69 10.04 30.94 0.31 -14.38 16 11 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 12 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 13 N -0.88 -26.10 13.97 55.49 0.78 -25.32 16 14 Si 0.86 21.33 27.74 -169.99 -4.71 16.61 16 15 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 18 C 0.07 0.83 11.12 -17.33 -0.19 0.64 16 19 N -0.46 -5.98 10.26 -9.31 -0.10 -6.07 16 20 C 0.10 1.14 6.78 -82.57 -0.56 0.58 16 21 C -0.10 -0.83 9.77 36.00 0.35 -0.48 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 24 H 0.07 0.53 5.95 -51.93 -0.31 0.22 16 25 H 0.15 2.27 6.49 -52.49 -0.34 1.93 16 26 H 0.41 3.70 8.82 -40.82 -0.36 3.34 16 27 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 28 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.16 1.43 8.06 -52.48 -0.42 1.00 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.50 5.93 -51.93 -0.31 0.19 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 298.03 15.07 4.49 4.49 Total: -1.00 -33.58 298.03 -6.54 -40.12 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -3.85 Total: 1.48 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -1.18 Total: -7.37 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.63 Total: -39.96 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.61 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -1.99 Total: -5.36 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.58 -6.54 -40.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893819391.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.121 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds