Wall clock time and date at job start Mon Mar 30 2020 00:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37477 * 123.34589 * 2 1 4 4 C 1.33821 * 115.09670 * 179.97438 * 3 2 1 5 5 S 1.70620 * 110.95477 * 0.02562 * 4 3 2 6 6 C 1.36643 * 123.35173 * 179.70720 * 2 1 3 7 7 C 1.46581 * 125.46263 * 0.02562 * 6 2 1 8 8 O 1.21704 * 119.99468 * 0.02562 * 7 6 2 9 9 N 1.34769 * 120.00162 * 179.97438 * 7 6 2 10 10 C 1.46509 * 119.99866 * 180.02562 * 9 7 6 11 11 C 1.53954 * 113.73748 * 253.74041 * 10 9 7 12 12 N 1.47807 * 86.03180 * 222.08341 * 11 10 9 13 13 C 1.36940 * 134.45409 * 204.64428 * 12 11 10 14 14 H 1.07996 * 120.00155 * 179.87604 * 13 12 11 15 15 C 1.38808 * 119.99852 * 359.87014 * 13 12 11 16 16 N 1.31620 * 120.00372 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00083 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47022 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47280 * 119.99877 * 17 15 13 20 20 H 1.48501 * 109.47194 * 240.00167 * 17 15 13 21 21 C 1.47576 * 91.05308 * 24.55245 * 12 11 10 22 22 H 1.08999 * 109.46995 * 90.02441 * 1 2 3 23 23 H 1.08994 * 109.46790 * 210.02128 * 1 2 3 24 24 H 1.08997 * 109.47305 * 330.02569 * 1 2 3 25 25 H 1.07991 * 122.45344 * 359.94628 * 3 2 1 26 26 H 1.07996 * 124.52080 * 179.97438 * 4 3 2 27 27 H 0.97002 * 120.00342 * 0.02562 * 9 7 6 28 28 H 1.08991 * 112.94347 * 25.33106 * 10 9 7 29 29 H 1.08998 * 113.77057 * 336.35254 * 11 10 9 30 30 H 1.09001 * 113.76516 * 107.74414 * 11 10 9 31 31 H 0.97003 * 120.00551 * 179.97438 * 16 15 13 32 32 H 1.09006 * 113.76968 * 221.14694 * 21 12 11 33 33 H 1.09006 * 113.76959 * 89.75730 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2628 1.1484 0.0000 4 6 3.5871 0.9564 0.0005 5 16 3.9624 -0.7080 0.0004 6 6 2.2583 -1.1414 0.0058 7 6 1.7286 -2.5081 0.0123 8 8 0.5259 -2.6945 0.0123 9 7 2.5733 -3.5582 0.0172 10 6 2.0437 -4.9243 0.0231 11 6 2.1872 -5.6387 1.3792 12 7 2.5854 -6.8267 0.5951 13 6 2.5535 -8.1775 0.8176 14 1 2.9134 -8.8582 0.0604 15 6 2.0587 -8.6718 2.0166 16 7 1.6197 -7.8423 2.9394 17 14 2.0158 -10.5145 2.3206 18 1 2.5628 -11.2244 1.1364 19 1 2.8374 -10.8386 3.5144 20 1 0.6138 -10.9455 2.5527 21 6 3.0287 -5.9731 -0.5242 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 -0.8898 0.5141 24 1 -0.3634 0.8902 0.5134 25 1 1.8201 2.1334 -0.0009 26 1 4.3205 1.7492 0.0002 27 1 3.5318 -3.4097 0.0168 28 1 1.0444 -4.9944 -0.4064 29 1 2.9846 -5.2377 2.0049 30 1 1.2451 -5.7593 1.9140 31 1 1.2736 -8.1878 3.7772 32 1 2.7572 -6.3604 -1.5063 33 1 4.0739 -5.6707 -0.4589 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030052046.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:11:36 Heat of formation + Delta-G solvation = 51.636629 kcal Electronic energy + Delta-G solvation = -17395.053501 eV Core-core repulsion = 14549.394298 eV Total energy + Delta-G solvation = -2845.659203 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.75552 -38.25067 -37.13440 -33.56855 -31.86699 -30.93066 -28.53171 -27.09666 -24.84057 -23.89371 -23.06332 -21.15859 -19.82546 -18.48394 -18.15386 -16.78667 -15.82803 -15.76821 -15.07048 -14.93088 -14.69346 -13.84978 -13.60097 -13.51006 -13.22887 -12.67575 -12.43631 -12.16527 -11.85454 -11.79828 -11.46794 -11.46034 -10.98380 -10.88818 -10.79592 -10.44753 -10.02430 -9.60858 -9.52172 -8.94270 -8.82311 -8.54527 -8.43233 -6.93113 -5.78071 -3.12330 0.46808 1.40507 1.79239 2.31983 3.36955 3.39048 3.42175 3.46868 3.48192 4.45150 4.73535 4.91893 5.12899 5.14617 5.25392 5.46968 5.49997 5.56163 5.73059 5.83611 5.95148 5.99468 6.18460 6.27899 6.37531 6.47350 6.56466 6.73449 7.22864 7.34078 7.54788 7.81024 7.95414 8.46107 9.01901 9.68286 10.54407 11.38733 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.041291 B = 0.004039 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.943585 B = 6931.082489 C = 7225.695489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.028 4.028 3 C -0.147 4.147 4 C -0.234 4.234 5 S 0.193 5.807 6 C -0.264 4.264 7 C 0.587 3.413 8 O -0.528 6.528 9 N -0.711 5.711 10 C 0.093 3.907 11 C 0.154 3.846 12 N -0.606 5.606 13 C -0.226 4.226 14 H 0.083 0.917 15 C -0.006 4.006 16 N -0.918 5.918 17 Si 0.914 3.086 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.113 3.887 22 H 0.073 0.927 23 H 0.096 0.904 24 H 0.062 0.938 25 H 0.143 0.857 26 H 0.167 0.833 27 H 0.393 0.607 28 H 0.113 0.887 29 H 0.029 0.971 30 H 0.078 0.922 31 H 0.254 0.746 32 H 0.051 0.949 33 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.274 18.503 -6.587 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.043 4.043 3 C -0.179 4.179 4 C -0.371 4.371 5 S 0.461 5.539 6 C -0.384 4.384 7 C 0.372 3.628 8 O -0.406 6.406 9 N -0.361 5.361 10 C -0.012 4.012 11 C 0.028 3.972 12 N -0.333 5.333 13 C -0.353 4.353 14 H 0.100 0.900 15 C -0.203 4.203 16 N -0.565 5.565 17 Si 0.744 3.256 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.216 1.216 21 C -0.014 4.014 22 H 0.092 0.908 23 H 0.114 0.886 24 H 0.081 0.919 25 H 0.160 0.840 26 H 0.184 0.816 27 H 0.227 0.773 28 H 0.131 0.869 29 H 0.047 0.953 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.742 17.198 -6.406 18.955 hybrid contribution -0.526 0.166 0.344 0.650 sum 4.216 17.364 -6.062 18.869 Atomic orbital electron populations 1.20738 0.88681 1.03986 1.02967 1.19540 0.97949 0.90382 0.96422 1.19925 0.92591 0.99611 1.05767 1.25219 1.00628 1.01837 1.09458 1.83034 1.04549 0.98122 1.68198 1.24613 0.96939 0.97863 1.18980 1.16934 0.86431 0.82708 0.76686 1.90773 1.14293 1.85126 1.50447 1.46057 1.09082 1.06678 1.74260 1.23973 0.99134 0.76858 1.01238 1.22721 0.99634 0.83450 0.91412 1.45718 1.72112 1.00870 1.14620 1.19035 1.36258 0.79569 1.00464 0.89951 1.24820 1.01149 0.98053 0.96248 1.69840 1.46650 1.32710 1.07275 0.86021 0.77387 0.84421 0.77747 1.20389 1.21702 1.21582 1.22873 0.95371 0.89592 0.93609 0.90812 0.88574 0.91879 0.83966 0.81579 0.77338 0.86875 0.95322 0.90369 0.93550 0.93091 0.94712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.56 36.01 0.34 -0.92 16 2 C -0.03 -0.35 5.90 -105.47 -0.62 -0.98 16 3 C -0.15 -1.47 9.97 -41.41 -0.41 -1.88 16 4 C -0.23 -2.11 10.92 29.18 0.32 -1.80 16 5 S 0.19 1.99 22.16 -107.50 -2.38 -0.39 16 6 C -0.26 -3.65 6.45 -36.80 -0.24 -3.89 16 7 C 0.59 9.96 7.78 -12.90 -0.10 9.86 16 8 O -0.53 -10.53 13.86 5.18 0.07 -10.46 16 9 N -0.71 -11.69 5.37 -56.69 -0.30 -11.99 16 10 C 0.09 1.84 4.40 -70.15 -0.31 1.53 16 11 C 0.15 3.74 7.33 -2.84 -0.02 3.72 16 12 N -0.61 -15.69 3.70 -177.91 -0.66 -16.35 16 13 C -0.23 -6.37 10.70 -15.06 -0.16 -6.53 16 14 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 15 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 16 N -0.92 -27.64 11.39 55.49 0.63 -27.01 16 17 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 C 0.11 2.27 8.69 -2.97 -0.03 2.24 16 22 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.10 1.41 6.00 -51.93 -0.31 1.10 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 26 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 27 H 0.39 5.47 7.83 -40.82 -0.32 5.15 16 28 H 0.11 2.41 7.50 -51.93 -0.39 2.02 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 2.15 7.16 -51.93 -0.37 1.78 16 31 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.04 0.65 8.11 -51.93 -0.42 0.23 16 LS Contribution 295.98 15.07 4.46 4.46 Total: -1.00 -32.66 295.98 -8.42 -41.08 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -3.90 Total: 2.36 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -1.32 Total: 1.10 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.33 Total: -55.35 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.07 Total: -10.46 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.38 Total: -0.39 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.66 -8.42 -41.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030052046.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.716 kcal (2) G-P(sol) polarization free energy of solvation -32.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds