Wall clock time and date at job start Mon Mar 30 2020 00:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37477 * 123.34589 * 2 1 4 4 C 1.33821 * 115.09670 * 179.97438 * 3 2 1 5 5 S 1.70620 * 110.95477 * 0.02562 * 4 3 2 6 6 C 1.36643 * 123.35173 * 179.70720 * 2 1 3 7 7 C 1.46581 * 125.46263 * 0.02562 * 6 2 1 8 8 O 1.21704 * 119.99468 * 0.02562 * 7 6 2 9 9 N 1.34769 * 120.00162 * 179.97438 * 7 6 2 10 10 C 1.46509 * 119.99866 * 180.02562 * 9 7 6 11 11 C 1.53954 * 113.73748 * 253.74041 * 10 9 7 12 12 N 1.47807 * 86.03180 * 222.08341 * 11 10 9 13 13 C 1.36940 * 134.45409 * 204.64428 * 12 11 10 14 14 H 1.07996 * 120.00155 * 179.87604 * 13 12 11 15 15 C 1.38808 * 119.99852 * 359.87014 * 13 12 11 16 16 N 1.31620 * 120.00372 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00083 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47022 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47280 * 119.99877 * 17 15 13 20 20 H 1.48501 * 109.47194 * 240.00167 * 17 15 13 21 21 C 1.47576 * 91.05308 * 24.55245 * 12 11 10 22 22 H 1.08999 * 109.46995 * 90.02441 * 1 2 3 23 23 H 1.08994 * 109.46790 * 210.02128 * 1 2 3 24 24 H 1.08997 * 109.47305 * 330.02569 * 1 2 3 25 25 H 1.07991 * 122.45344 * 359.94628 * 3 2 1 26 26 H 1.07996 * 124.52080 * 179.97438 * 4 3 2 27 27 H 0.97002 * 120.00342 * 0.02562 * 9 7 6 28 28 H 1.08991 * 112.94347 * 25.33106 * 10 9 7 29 29 H 1.08998 * 113.77057 * 336.35254 * 11 10 9 30 30 H 1.09001 * 113.76516 * 107.74414 * 11 10 9 31 31 H 0.97003 * 120.00551 * 179.97438 * 16 15 13 32 32 H 1.09006 * 113.76968 * 221.14694 * 21 12 11 33 33 H 1.09006 * 113.76959 * 89.75730 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2628 1.1484 0.0000 4 6 3.5871 0.9564 0.0005 5 16 3.9624 -0.7080 0.0004 6 6 2.2583 -1.1414 0.0058 7 6 1.7286 -2.5081 0.0123 8 8 0.5259 -2.6945 0.0123 9 7 2.5733 -3.5582 0.0172 10 6 2.0437 -4.9243 0.0231 11 6 2.1872 -5.6387 1.3792 12 7 2.5854 -6.8267 0.5951 13 6 2.5535 -8.1775 0.8176 14 1 2.9134 -8.8582 0.0604 15 6 2.0587 -8.6718 2.0166 16 7 1.6197 -7.8423 2.9394 17 14 2.0158 -10.5145 2.3206 18 1 2.5628 -11.2244 1.1364 19 1 2.8374 -10.8386 3.5144 20 1 0.6138 -10.9455 2.5527 21 6 3.0287 -5.9731 -0.5242 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 -0.8898 0.5141 24 1 -0.3634 0.8902 0.5134 25 1 1.8201 2.1334 -0.0009 26 1 4.3205 1.7492 0.0002 27 1 3.5318 -3.4097 0.0168 28 1 1.0444 -4.9944 -0.4064 29 1 2.9846 -5.2377 2.0049 30 1 1.2451 -5.7593 1.9140 31 1 1.2736 -8.1878 3.7772 32 1 2.7572 -6.3604 -1.5063 33 1 4.0739 -5.6707 -0.4589 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030052046.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:11:36 Heat of formation + Delta-G solvation = 29.315823 kcal Electronic energy + Delta-G solvation = -17396.021404 eV Core-core repulsion = 14549.394298 eV Total energy + Delta-G solvation = -2846.627106 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.12044 -39.60817 -38.44204 -35.20889 -33.81780 -31.82252 -29.97994 -28.69853 -26.65775 -25.32012 -24.30139 -22.48986 -21.47476 -19.72600 -19.13161 -18.77853 -17.24317 -17.01724 -16.82170 -16.13238 -15.93861 -15.71958 -14.82335 -14.74847 -14.41676 -14.15247 -13.65196 -13.37832 -13.25704 -13.20740 -13.02271 -12.82367 -12.67352 -12.66419 -12.30313 -11.91717 -11.80774 -11.55571 -10.95431 -10.90348 -10.13759 -9.70264 -9.35077 -8.99930 -7.93244 -5.29281 -0.45018 0.54537 0.98050 1.43501 1.45641 1.47553 1.57963 2.06828 2.16755 2.48943 3.23253 3.37745 3.79806 3.83236 4.01365 4.26524 4.30198 4.43155 4.49005 4.69880 4.70929 4.80827 4.87060 5.02939 5.04814 5.14816 5.20747 5.41174 5.46039 5.56348 5.64774 5.86840 6.48430 6.86397 7.15619 7.56424 8.48803 9.23914 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.041291 B = 0.004039 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.943585 B = 6931.082489 C = 7225.695489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.027 4.027 3 C -0.159 4.159 4 C -0.211 4.211 5 S 0.225 5.775 6 C -0.312 4.312 7 C 0.584 3.416 8 O -0.569 6.569 9 N -0.703 5.703 10 C 0.121 3.879 11 C 0.152 3.848 12 N -0.637 5.637 13 C -0.236 4.236 14 H 0.092 0.908 15 C -0.069 4.069 16 N -0.956 5.956 17 Si 0.984 3.016 18 H -0.260 1.260 19 H -0.291 1.291 20 H -0.293 1.293 21 C 0.122 3.878 22 H 0.077 0.923 23 H 0.062 0.938 24 H 0.089 0.911 25 H 0.171 0.829 26 H 0.204 0.796 27 H 0.408 0.592 28 H 0.096 0.904 29 H 0.025 0.975 30 H 0.034 0.966 31 H 0.249 0.751 32 H 0.068 0.932 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.238 20.225 -7.825 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.043 4.043 3 C -0.189 4.189 4 C -0.349 4.349 5 S 0.493 5.507 6 C -0.432 4.432 7 C 0.373 3.627 8 O -0.450 6.450 9 N -0.353 5.353 10 C 0.015 3.985 11 C 0.026 3.974 12 N -0.364 5.364 13 C -0.364 4.364 14 H 0.110 0.890 15 C -0.261 4.261 16 N -0.605 5.605 17 Si 0.812 3.188 18 H -0.184 1.184 19 H -0.218 1.218 20 H -0.220 1.220 21 C -0.003 4.003 22 H 0.095 0.905 23 H 0.081 0.919 24 H 0.108 0.892 25 H 0.188 0.812 26 H 0.221 0.779 27 H 0.244 0.756 28 H 0.114 0.886 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.757 18.948 -7.689 21.536 hybrid contribution -1.091 -0.210 0.693 1.309 sum 5.666 18.739 -6.996 20.789 Atomic orbital electron populations 1.20711 0.89046 1.03585 1.03061 1.19853 0.98198 0.91121 0.95174 1.20116 0.92796 0.99799 1.06239 1.25732 1.01077 1.01909 1.06182 1.82891 1.01349 0.99048 1.67406 1.24369 0.99718 0.96180 1.22895 1.17413 0.85904 0.83999 0.75413 1.90753 1.16059 1.86022 1.52178 1.45783 1.09889 1.05243 1.74425 1.23251 0.98694 0.78758 0.97846 1.22589 0.97343 0.84472 0.93034 1.46039 1.72966 1.00811 1.16618 1.19496 1.35138 0.81153 1.00582 0.88994 1.25730 1.01491 1.02629 0.96292 1.70051 1.48226 1.34634 1.07590 0.84933 0.76878 0.79114 0.77904 1.18428 1.21833 1.22029 1.23014 0.96604 0.87944 0.92725 0.90457 0.91909 0.89243 0.81188 0.77925 0.75599 0.88571 0.95745 0.94712 0.94234 0.91362 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.51 9.56 71.24 0.68 -1.83 16 2 C -0.03 -0.65 5.90 -20.42 -0.12 -0.77 16 3 C -0.16 -2.63 9.97 21.09 0.21 -2.42 16 4 C -0.21 -2.92 10.92 66.82 0.73 -2.19 16 5 S 0.22 4.03 22.16 -56.49 -1.25 2.77 16 6 C -0.31 -8.38 6.45 24.07 0.16 -8.22 16 7 C 0.58 20.21 7.78 86.42 0.67 20.88 16 8 O -0.57 -23.85 13.86 -4.36 -0.06 -23.91 16 9 N -0.70 -23.06 5.37 -451.48 -2.42 -25.48 16 10 C 0.12 4.87 4.40 46.75 0.21 5.07 16 11 C 0.15 7.69 7.33 86.44 0.63 8.32 16 12 N -0.64 -33.30 3.70 -716.78 -2.65 -35.96 16 13 C -0.24 -13.37 10.70 84.03 0.90 -12.47 16 14 H 0.09 4.89 7.83 -2.91 -0.02 4.87 16 15 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 16 N -0.96 -59.69 11.39 21.65 0.25 -59.44 16 17 Si 0.98 46.31 29.55 68.60 2.03 48.33 16 18 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 19 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 20 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 21 C 0.12 4.80 8.69 86.48 0.75 5.55 16 22 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.06 1.94 6.00 -2.39 -0.01 1.93 16 24 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.17 1.83 8.06 -2.92 -0.02 1.81 16 26 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 27 H 0.41 10.86 7.83 -92.71 -0.73 10.14 16 28 H 0.10 4.26 7.50 -2.39 -0.02 4.24 16 29 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.03 2.03 7.16 -2.39 -0.02 2.02 16 31 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 32 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 33 H 0.07 2.22 8.11 -2.38 -0.02 2.20 16 Total: -1.00 -73.85 295.98 1.58 -72.28 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.41 Total: 12.99 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 5.28 Total: 8.42 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -4.83 Total: -120.89 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.06 Total: -23.91 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -1.25 Total: 2.77 kcal Total: -73.85 1.58 -72.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030052046.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.591 kcal (2) G-P(sol) polarization free energy of solvation -73.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds