Wall clock time and date at job start Mon Mar 30 2020 01:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34776 * 120.00130 * 2 1 4 4 O 1.21638 * 119.99860 * 186.26325 * 3 2 1 5 5 C 1.47188 * 119.99774 * 6.25382 * 3 2 1 6 6 C 1.44427 * 123.46453 * 19.69158 * 5 3 2 7 7 C 1.32765 * 113.08608 * 179.97438 * 6 5 3 8 8 S 1.75507 * 110.57551 * 359.97438 * 7 6 5 9 9 C 1.36016 * 123.46111 * 199.38307 * 5 3 2 10 10 C 1.46494 * 119.99721 * 180.02562 * 2 1 3 11 11 C 1.53506 * 114.20700 * 299.99695 * 10 2 1 12 12 N 1.47061 * 87.98270 * 87.71744 * 11 10 2 13 13 C 1.36940 * 136.05886 * 207.07945 * 12 11 10 14 14 H 1.07999 * 119.99775 * 354.60159 * 13 12 11 15 15 C 1.38810 * 119.99780 * 174.60044 * 13 12 11 16 16 N 1.31623 * 119.99582 * 179.75987 * 15 13 12 17 17 Si 1.86799 * 120.00525 * 359.75562 * 15 13 12 18 18 H 1.48500 * 109.47227 * 174.33100 * 17 15 13 19 19 H 1.48493 * 109.47206 * 294.33880 * 17 15 13 20 20 H 1.48502 * 109.46483 * 54.33450 * 17 15 13 21 21 C 1.47066 * 87.88663 * 27.34521 * 12 11 10 22 22 H 1.09003 * 109.47320 * 272.90857 * 1 2 3 23 23 H 1.09007 * 109.46808 * 32.90975 * 1 2 3 24 24 H 1.08998 * 109.47654 * 152.90698 * 1 2 3 25 25 H 1.07997 * 123.45530 * 0.02562 * 6 5 3 26 26 H 1.08001 * 124.71054 * 179.97438 * 7 6 5 27 27 H 1.07996 * 124.58932 * 359.97438 * 9 5 3 28 28 H 1.09003 * 113.28476 * 166.93409 * 10 2 1 29 29 H 1.09003 * 113.46492 * 332.93854 * 11 10 2 30 30 H 1.08995 * 113.46709 * 202.50172 * 11 10 2 31 31 H 0.96998 * 119.99956 * 5.04070 * 16 15 13 32 32 H 1.09002 * 113.46956 * 87.43266 * 21 12 11 33 33 H 1.08999 * 113.46701 * 217.87535 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3499 1.1703 -0.1149 5 6 1.4095 2.4381 0.1389 6 6 0.0737 2.5347 0.6793 7 6 -0.3864 3.7797 0.7107 8 16 0.8094 4.8954 0.0740 9 6 1.9266 3.6429 -0.2230 10 6 2.1974 -1.2687 -0.0006 11 6 1.9059 -2.1643 1.2116 12 7 0.7772 -2.7294 0.4570 13 6 -0.4242 -3.3092 0.7666 14 1 -0.6771 -3.5104 1.7971 15 6 -1.3169 -3.6383 -0.2442 16 7 -2.4696 -4.1999 0.0530 17 14 -0.8824 -3.2842 -2.0261 18 1 -1.9308 -3.8493 -2.9130 19 1 -0.7978 -1.8161 -2.2326 20 1 0.4270 -3.9057 -2.3491 21 6 1.5093 -2.4040 -0.7762 22 1 -0.3634 0.0521 1.0264 23 1 -0.3633 0.8628 -0.5584 24 1 -0.3634 -0.9149 -0.4680 25 1 -0.4925 1.6818 1.0235 26 1 -1.3612 4.0660 1.0771 27 1 2.9113 3.7864 -0.6427 28 1 3.2575 -1.1542 -0.2269 29 1 1.6005 -1.6088 2.0983 30 1 2.6956 -2.8868 1.4174 31 1 -2.7270 -4.3171 0.9808 32 1 2.1946 -3.1897 -1.0944 33 1 0.8661 -2.0528 -1.5830 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042452166.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:13 Heat of formation + Delta-G solvation = 91.265043 kcal Electronic energy + Delta-G solvation = -18337.015569 eV Core-core repulsion = 15493.074783 eV Total energy + Delta-G solvation = -2843.940786 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.29253 -38.38284 -36.69444 -34.20536 -32.36062 -29.84670 -28.47848 -26.44801 -25.48546 -25.14105 -22.52580 -20.93465 -19.58123 -18.70366 -17.91272 -17.42377 -16.42829 -16.05108 -15.34554 -15.03232 -14.31791 -14.03192 -13.75957 -13.21535 -13.17790 -13.01759 -12.74179 -12.59408 -12.32517 -11.94600 -11.47435 -11.38102 -10.95495 -10.85569 -10.54754 -10.42271 -9.72550 -9.28315 -9.15160 -9.10559 -9.04861 -8.52181 -8.16480 -7.22123 -6.37091 -3.30655 0.76815 1.46299 1.80594 2.01603 3.27874 3.30950 3.37563 3.42074 3.57815 4.49823 4.63073 4.69547 4.88949 5.10503 5.24969 5.34483 5.37389 5.60308 5.72617 5.80855 5.90493 5.96905 6.01966 6.15924 6.17757 6.19527 6.32324 6.36085 6.60621 6.98213 7.03141 7.72951 8.16735 8.38043 8.90635 9.42071 10.28533 11.14329 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026694 B = 0.005995 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.671492 B = 4669.657102 C = 5130.139574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.573 5.573 3 C 0.577 3.423 4 O -0.550 6.550 5 C -0.154 4.154 6 C -0.119 4.119 7 C -0.235 4.235 8 S 0.164 5.836 9 C -0.183 4.183 10 C 0.097 3.903 11 C 0.111 3.889 12 N -0.626 5.626 13 C -0.300 4.300 14 H 0.082 0.918 15 C -0.023 4.023 16 N -0.934 5.934 17 Si 1.067 2.933 18 H -0.295 1.295 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.086 3.914 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.101 0.899 25 H 0.169 0.831 26 H 0.169 0.831 27 H 0.173 0.827 28 H 0.108 0.892 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.261 0.739 32 H 0.057 0.943 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.600 16.686 -0.419 17.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.303 5.303 3 C 0.365 3.635 4 O -0.430 6.430 5 C -0.171 4.171 6 C -0.147 4.147 7 C -0.370 4.370 8 S 0.429 5.571 9 C -0.322 4.322 10 C -0.008 4.008 11 C -0.017 4.017 12 N -0.355 5.355 13 C -0.426 4.426 14 H 0.100 0.900 15 C -0.222 4.222 16 N -0.577 5.577 17 Si 0.901 3.099 18 H -0.223 1.223 19 H -0.219 1.219 20 H -0.216 1.216 21 C -0.040 4.040 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.120 0.880 25 H 0.186 0.814 26 H 0.186 0.814 27 H 0.190 0.810 28 H 0.126 0.874 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.446 17.914 -2.171 18.849 hybrid contribution 0.476 -1.632 1.884 2.537 sum 5.922 16.282 -0.287 17.328 Atomic orbital electron populations 1.22447 0.78574 1.04346 1.01754 1.47175 1.07440 1.04516 1.71170 1.17634 0.86523 0.82842 0.76543 1.90742 1.13708 1.87355 1.51199 1.20308 0.95595 0.93886 1.07331 1.22125 0.94192 0.98536 0.99864 1.25526 1.04639 0.96482 1.10329 1.82949 1.05183 1.09933 1.59050 1.25508 1.05065 0.96409 1.05170 1.22531 0.95912 0.82907 0.99428 1.22779 0.90581 0.93223 0.95092 1.46236 1.15367 1.72602 1.01288 1.20142 0.89306 1.37842 0.95293 0.90031 1.25625 0.94196 0.98419 1.03967 1.70910 1.21869 1.44203 1.20687 0.83799 0.74587 0.75337 0.76166 1.22276 1.21902 1.21650 1.23219 0.94285 0.93943 0.92530 0.92183 0.91671 0.88026 0.81447 0.81393 0.80951 0.87404 0.93301 0.93249 0.92839 0.92519 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.25 7.85 59.85 0.47 1.72 16 2 N -0.57 -10.37 3.12 -174.91 -0.55 -10.92 16 3 C 0.58 10.20 7.58 -12.63 -0.10 10.10 16 4 O -0.55 -10.92 16.34 5.24 0.09 -10.83 16 5 C -0.15 -2.26 5.59 -104.63 -0.59 -2.84 16 6 C -0.12 -1.51 8.12 -39.02 -0.32 -1.83 16 7 C -0.24 -2.44 11.12 28.86 0.32 -2.11 16 8 S 0.16 1.57 23.02 -107.50 -2.48 -0.91 16 9 C -0.18 -2.28 10.57 29.93 0.32 -1.97 16 10 C 0.10 1.81 4.70 -67.68 -0.32 1.50 16 11 C 0.11 2.17 8.31 -8.51 -0.07 2.10 16 12 N -0.63 -14.58 2.41 -184.62 -0.44 -15.03 16 13 C -0.30 -8.14 10.64 -15.06 -0.16 -8.30 16 14 H 0.08 2.37 8.05 -52.49 -0.42 1.95 16 15 C -0.02 -0.66 5.50 -17.43 -0.10 -0.75 16 16 N -0.93 -28.37 13.70 55.49 0.76 -27.61 16 17 Si 1.07 25.80 23.91 -169.99 -4.06 21.73 16 18 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 19 H -0.29 -6.45 5.82 56.52 0.33 -6.12 16 20 H -0.29 -6.66 6.44 56.52 0.36 -6.29 16 21 C 0.09 1.79 5.02 -8.37 -0.04 1.75 16 22 H 0.06 1.02 6.78 -51.93 -0.35 0.66 16 23 H 0.06 1.00 5.75 -51.93 -0.30 0.70 16 24 H 0.10 2.13 3.15 -51.93 -0.16 1.97 16 25 H 0.17 2.12 4.64 -52.49 -0.24 1.87 16 26 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 27 H 0.17 2.01 8.06 -52.49 -0.42 1.59 16 28 H 0.11 1.90 7.26 -51.93 -0.38 1.53 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.26 7.86 8.73 -40.82 -0.36 7.51 16 32 H 0.06 1.13 8.09 -51.93 -0.42 0.71 16 33 H 0.05 1.15 3.43 -51.93 -0.18 0.97 16 LS Contribution 275.14 15.07 4.15 4.15 Total: -1.00 -31.53 275.14 -6.52 -38.06 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -3.41 Total: 2.00 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -0.58 Total: -0.63 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.23 Total: -53.56 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -4.06 Total: 21.73 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.48 Total: -0.91 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.53 -6.52 -38.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042452166.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.322 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds