Wall clock time and date at job start Mon Mar 30 2020 01:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00004 * 2 1 4 4 H 1.09008 * 115.54906 * 4.27859 * 3 2 1 5 5 C 1.53000 * 117.50060 * 218.61110 * 3 2 1 6 6 C 1.53002 * 60.02940 * 252.47399 * 5 3 2 7 7 H 1.09000 * 117.49996 * 107.50493 * 6 5 3 8 8 C 1.50706 * 117.49668 * 252.51929 * 6 5 3 9 9 O 1.20827 * 119.99980 * 68.61204 * 8 6 5 10 10 O 1.34229 * 119.99972 * 248.60990 * 8 6 5 11 11 C 1.45203 * 116.99844 * 180.02562 * 10 8 6 12 12 H 1.08997 * 109.47181 * 29.99641 * 11 10 8 13 13 C 1.50694 * 109.47201 * 150.00123 * 11 10 8 14 14 H 1.08002 * 119.99832 * 359.97438 * 13 11 10 15 15 C 1.37876 * 120.00199 * 179.97438 * 13 11 10 16 16 N 1.31508 * 119.99955 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00122 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.47153 * 90.00093 * 17 15 13 19 19 H 1.48501 * 109.47054 * 210.00050 * 17 15 13 20 20 H 1.48502 * 109.47227 * 329.99799 * 17 15 13 21 21 C 1.50703 * 109.46754 * 269.99903 * 11 10 8 22 22 C 1.34519 * 125.78922 * 145.00060 * 21 11 10 23 23 C 1.41378 * 106.84172 * 179.97438 * 22 21 11 24 24 C 1.34513 * 106.84247 * 0.02562 * 23 22 21 25 25 O 1.34301 * 125.79127 * 324.68902 * 21 11 10 26 26 H 1.09001 * 109.47309 * 60.00003 * 1 2 3 27 27 H 1.08999 * 109.47415 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47310 * 299.99897 * 1 2 3 29 29 H 1.09002 * 117.49833 * 359.97438 * 5 3 2 30 30 H 1.09002 * 117.49953 * 144.97545 * 5 3 2 31 31 H 0.97004 * 120.00544 * 180.02562 * 16 15 13 32 32 H 1.08004 * 126.57596 * 0.03718 * 22 21 11 33 33 H 1.07996 * 126.58058 * 179.97438 * 23 22 21 34 34 H 1.07994 * 125.79259 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3054 2.1339 0.0734 5 6 3.2663 1.5195 -0.8469 6 6 3.3718 1.4738 0.6788 7 1 3.8245 0.5887 1.1257 8 6 3.6352 2.7721 1.3973 9 8 2.7867 3.6319 1.4220 10 8 4.8125 2.9733 2.0098 11 6 4.9965 4.2469 2.6825 12 1 4.0331 4.6126 3.0377 13 6 5.9282 4.0667 3.8532 14 1 6.3404 3.0924 4.0702 15 6 6.2542 5.1457 4.6472 16 7 5.7526 6.3322 4.3826 17 14 7.4085 4.9222 6.0987 18 1 8.8090 5.1412 5.6558 19 1 7.0657 5.9034 7.1594 20 1 7.2686 3.5445 6.6349 21 6 5.5877 5.2431 1.7187 22 6 5.3168 6.5603 1.6840 23 6 6.0857 7.1091 0.6321 24 6 6.7801 6.0944 0.0864 25 8 6.4789 4.9676 0.7524 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.6496 0.6645 -1.4037 30 1 3.3879 2.4886 -1.3309 31 1 5.9823 7.0915 4.9409 32 1 4.6422 7.0960 2.3354 33 1 6.1102 8.1441 0.3249 34 1 7.4667 6.1732 -0.7434 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123367707.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:20 Heat of formation + Delta-G solvation = -100.463521 kcal Electronic energy + Delta-G solvation = -20127.077769 eV Core-core repulsion = 16799.777386 eV Total energy + Delta-G solvation = -3327.300383 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.18571 -41.51937 -39.45774 -37.64095 -35.89485 -35.32770 -33.53138 -31.61697 -28.68848 -27.68810 -26.36279 -24.50354 -23.19500 -22.40132 -21.70181 -20.95927 -19.24912 -18.77635 -18.44069 -17.53319 -17.13854 -16.79693 -16.76593 -16.37661 -16.03851 -15.79100 -15.01892 -14.69003 -14.12382 -13.70281 -13.67733 -13.50947 -13.40058 -13.12092 -13.02707 -12.84075 -12.47711 -12.32657 -12.22847 -12.06731 -11.77419 -11.45155 -11.39443 -10.83415 -10.51299 -10.35602 -9.12259 -8.24826 -6.55374 1.06467 1.09416 1.38587 1.41303 1.51089 1.68403 2.07073 2.32794 2.40308 2.60605 2.75969 2.99362 3.54564 3.68041 3.97733 4.01093 4.22193 4.38659 4.40579 4.55020 4.56809 4.58662 4.63777 4.75639 4.84793 4.91210 5.15332 5.32718 5.40103 5.45981 5.64309 5.81136 5.93627 6.08489 6.46328 6.55404 6.86006 7.16636 8.70636 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.020589 B = 0.005718 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.621479 B = 4895.277607 C = 5743.797699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.368 6.368 3 C 0.060 3.940 4 H 0.123 0.877 5 C -0.129 4.129 6 C -0.186 4.186 7 H 0.150 0.850 8 C 0.480 3.520 9 O -0.547 6.547 10 O -0.353 6.353 11 C 0.301 3.699 12 H 0.043 0.957 13 C -0.559 4.559 14 H 0.073 0.927 15 C 0.026 3.974 16 N -0.889 5.889 17 Si 0.982 3.018 18 H -0.273 1.273 19 H -0.273 1.273 20 H -0.262 1.262 21 C -0.011 4.011 22 C -0.188 4.188 23 C -0.228 4.228 24 C -0.069 4.069 25 O -0.196 6.196 26 H 0.060 0.940 27 H 0.111 0.889 28 H 0.045 0.955 29 H 0.143 0.857 30 H 0.109 0.891 31 H 0.272 0.728 32 H 0.126 0.874 33 H 0.166 0.834 34 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.680 -7.007 -10.058 13.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.286 6.286 3 C 0.002 3.998 4 H 0.140 0.860 5 C -0.166 4.166 6 C -0.205 4.205 7 H 0.167 0.833 8 C 0.326 3.674 9 O -0.438 6.438 10 O -0.269 6.269 11 C 0.247 3.753 12 H 0.060 0.940 13 C -0.596 4.596 14 H 0.091 0.909 15 C -0.178 4.178 16 N -0.524 5.524 17 Si 0.805 3.195 18 H -0.199 1.199 19 H -0.198 1.198 20 H -0.186 1.186 21 C -0.061 4.061 22 C -0.208 4.208 23 C -0.247 4.247 24 C -0.136 4.136 25 O -0.093 6.093 26 H 0.079 0.921 27 H 0.130 0.870 28 H 0.063 0.937 29 H 0.160 0.840 30 H 0.127 0.873 31 H 0.081 0.919 32 H 0.144 0.856 33 H 0.184 0.816 34 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -4.708 -6.989 -10.011 13.085 hybrid contribution 0.278 0.961 1.186 1.552 sum -4.430 -6.028 -8.824 11.569 Atomic orbital electron populations 1.23122 0.78280 1.04673 1.01258 1.87787 1.22444 1.24477 1.93892 1.22720 0.89125 0.87370 1.00632 0.85993 1.23629 0.98734 1.05610 0.88596 1.22302 1.05956 0.94247 0.98018 0.83277 1.23293 0.79630 0.88751 0.75754 1.90572 1.46898 1.46994 1.59341 1.86526 1.36404 1.41074 1.62918 1.18805 0.95640 0.74727 0.86130 0.93977 1.21157 1.31090 0.97109 1.10197 0.90885 1.25816 0.97479 0.94073 1.00395 1.70153 1.42990 1.00256 1.38996 0.85199 0.78133 0.78727 0.77484 1.19862 1.19781 1.18620 1.23319 0.93977 0.97670 0.91168 1.21363 1.05467 0.93678 1.00279 1.22063 1.02163 1.01281 0.99241 1.24700 1.04681 0.83072 1.01125 1.83965 1.49857 1.36594 1.38889 0.92123 0.87032 0.93656 0.83952 0.87274 0.91917 0.85567 0.81638 0.74316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.88 113.37 1.23 1.61 16 2 O -0.37 -8.87 10.96 -148.98 -1.63 -10.50 16 3 C 0.06 1.60 5.96 30.62 0.18 1.78 16 4 H 0.12 3.34 7.46 -2.38 -0.02 3.32 16 5 C -0.13 -3.16 10.18 30.60 0.31 -2.84 16 6 C -0.19 -5.94 6.25 -11.51 -0.07 -6.01 16 7 H 0.15 4.37 8.14 -2.39 -0.02 4.35 16 8 C 0.48 21.12 7.71 71.24 0.55 21.66 16 9 O -0.55 -26.58 15.48 21.96 0.34 -26.24 16 10 O -0.35 -17.90 9.84 -48.78 -0.48 -18.38 16 11 C 0.30 16.94 2.41 29.10 0.07 17.01 16 12 H 0.04 2.61 7.16 -2.39 -0.02 2.59 16 13 C -0.56 -32.23 8.89 25.60 0.23 -32.00 16 14 H 0.07 4.14 7.81 -2.91 -0.02 4.12 16 15 C 0.03 1.42 5.30 84.66 0.45 1.87 16 16 N -0.89 -50.29 10.47 21.45 0.22 -50.06 16 17 Si 0.98 43.18 29.54 68.60 2.03 45.21 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 21 C -0.01 -0.59 5.67 24.83 0.14 -0.45 16 22 C -0.19 -9.63 9.04 22.19 0.20 -9.43 16 23 C -0.23 -9.43 10.91 22.19 0.24 -9.19 16 24 C -0.07 -2.69 12.09 66.97 0.81 -1.88 16 25 O -0.20 -9.59 10.63 0.83 0.01 -9.58 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 32 H 0.13 6.83 7.49 -2.91 -0.02 6.81 16 33 H 0.17 5.51 8.06 -2.91 -0.02 5.48 16 34 H 0.24 6.22 8.06 -2.91 -0.02 6.19 16 Total: -1.00 -70.87 306.71 5.94 -64.93 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 1.11 Total: 22.49 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 4.34 Total: -17.87 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.22 Total: -50.06 kcal Atomic # 8 Polarization: -62.94 SS G_CDS: -1.76 Total: -64.70 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -70.87 5.94 -64.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123367707.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.529 kcal (2) G-P(sol) polarization free energy of solvation -70.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds