Wall clock time and date at job start Mon Mar 30 2020 01:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00125 * 2 1 4 4 H 1.09001 * 115.56043 * 4.30531 * 3 2 1 5 5 C 1.52998 * 117.49775 * 218.62036 * 3 2 1 6 6 C 1.52997 * 60.00067 * 252.50884 * 5 3 2 7 7 H 1.09004 * 117.49922 * 107.51039 * 6 5 3 8 8 C 1.50696 * 117.49826 * 252.50815 * 6 5 3 9 9 O 1.20825 * 119.99637 * 68.61169 * 8 6 5 10 10 O 1.34228 * 120.00531 * 248.60595 * 8 6 5 11 11 C 1.45193 * 117.00468 * 180.02562 * 10 8 6 12 12 H 1.08995 * 109.47035 * 29.99842 * 11 10 8 13 13 C 1.50701 * 109.47117 * 270.00120 * 11 10 8 14 14 H 1.07998 * 120.00247 * 119.99480 * 13 11 10 15 15 C 1.37878 * 119.99767 * 300.00089 * 13 11 10 16 16 N 1.31517 * 120.00455 * 359.97438 * 15 13 11 17 17 Si 1.86807 * 119.99992 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46923 * 90.00060 * 17 15 13 19 19 H 1.48501 * 109.47141 * 209.99738 * 17 15 13 20 20 H 1.48498 * 109.47002 * 329.99982 * 17 15 13 21 21 C 1.50700 * 109.47312 * 150.00437 * 11 10 8 22 22 C 1.34520 * 125.78639 * 220.00325 * 21 11 10 23 23 C 1.41381 * 106.83580 * 180.22245 * 22 21 11 24 24 C 1.34513 * 106.84363 * 359.57150 * 23 22 21 25 25 O 1.34302 * 125.79150 * 39.95366 * 21 11 10 26 26 H 1.08996 * 109.47422 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47520 * 300.00593 * 1 2 3 28 28 H 1.09005 * 109.47217 * 60.00078 * 1 2 3 29 29 H 1.09003 * 117.50009 * 145.01730 * 5 3 2 30 30 H 1.09001 * 117.51860 * 359.97438 * 5 3 2 31 31 H 0.96998 * 120.00256 * 180.02562 * 16 15 13 32 32 H 1.08002 * 126.57789 * 359.95308 * 22 21 11 33 33 H 1.08009 * 126.57222 * 179.73218 * 23 22 21 34 34 H 1.07998 * 125.78715 * 180.12081 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3057 2.1339 0.0738 5 6 3.2662 1.5195 -0.8471 6 6 3.3713 1.4728 0.6786 7 1 3.8236 0.5872 1.1251 8 6 3.6353 2.7704 1.3979 9 8 2.7873 3.6306 1.4229 10 8 4.8125 2.9705 2.0110 11 6 4.9971 4.2435 2.6844 12 1 4.0339 4.6096 3.0396 13 6 5.5892 5.2400 1.7214 14 1 5.0547 6.1490 1.4882 15 6 6.8134 4.9913 1.1379 16 7 7.4647 3.8846 1.4221 17 14 7.5472 6.2262 -0.0563 18 1 8.3803 7.2023 0.6907 19 1 8.3904 5.5135 -1.0494 20 1 6.4540 6.9443 -0.7596 21 6 5.9284 4.0621 3.8553 22 6 5.7962 4.6405 5.0625 23 6 6.8855 4.2004 5.8490 24 6 7.6130 3.3719 5.0784 25 8 7.0305 3.2947 3.8707 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 3.3881 2.4888 -1.3305 30 1 3.6497 0.6646 -1.4041 31 1 8.3261 3.7097 1.0119 32 1 5.0112 5.3154 5.3703 33 1 7.0923 4.4746 6.8730 34 1 8.5153 2.8599 5.3783 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123367713.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:23 Heat of formation + Delta-G solvation = -76.329802 kcal Electronic energy + Delta-G solvation = -20229.552406 eV Core-core repulsion = 16903.298540 eV Total energy + Delta-G solvation = -3326.253866 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.30435 -39.58796 -38.04845 -35.67223 -34.42007 -32.92965 -31.83102 -29.86138 -26.83301 -26.54431 -24.60966 -22.75565 -21.94019 -20.64040 -19.53803 -19.37344 -17.55415 -16.85938 -16.54001 -15.81888 -15.52323 -15.00284 -14.99904 -14.62408 -14.46107 -14.40290 -13.39428 -12.92061 -12.62714 -12.21579 -11.86645 -11.76088 -11.58207 -11.35921 -11.32739 -11.28944 -11.08415 -10.98728 -10.45003 -10.26770 -9.83994 -9.56666 -9.17448 -9.04982 -8.83052 -8.75092 -7.35400 -6.22768 -4.45051 2.88494 3.01097 3.18444 3.26239 3.30303 3.31011 3.62275 3.96213 4.23631 4.26556 4.31505 4.95373 5.06174 5.12620 5.15169 5.33748 5.45263 5.56238 5.64809 5.74529 5.88569 5.94496 5.98639 6.21449 6.39052 6.46024 6.80516 6.89162 7.17880 7.20759 7.47916 7.61761 7.75803 7.80899 8.42427 8.57637 8.96953 9.28732 10.76305 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.006436 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.821520 B = 4349.604061 C = 5345.158096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.043 3.957 4 H 0.125 0.875 5 C -0.151 4.151 6 C -0.161 4.161 7 H 0.133 0.867 8 C 0.492 3.508 9 O -0.533 6.533 10 O -0.328 6.328 11 C 0.278 3.722 12 H 0.071 0.929 13 C -0.550 4.550 14 H 0.074 0.926 15 C 0.080 3.920 16 N -0.823 5.823 17 Si 0.897 3.103 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.269 1.269 21 C 0.079 3.921 22 C -0.266 4.266 23 C -0.222 4.222 24 C -0.082 4.082 25 O -0.111 6.111 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.268 0.732 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.287 -5.654 -0.399 8.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C -0.015 4.015 4 H 0.143 0.857 5 C -0.188 4.188 6 C -0.180 4.180 7 H 0.151 0.849 8 C 0.335 3.665 9 O -0.426 6.426 10 O -0.242 6.242 11 C 0.226 3.774 12 H 0.089 0.911 13 C -0.586 4.586 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.456 5.456 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.207 1.207 20 H -0.194 1.194 21 C 0.026 3.974 22 C -0.285 4.285 23 C -0.241 4.241 24 C -0.151 4.151 25 O -0.003 6.003 26 H 0.105 0.895 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.078 0.922 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -6.098 -5.854 -0.629 8.476 hybrid contribution 0.539 1.098 -0.235 1.245 sum -5.559 -4.756 -0.864 7.367 Atomic orbital electron populations 1.22818 0.80450 1.02690 1.00459 1.87798 1.20179 1.25678 1.94058 1.22784 0.89730 0.86463 1.02566 0.85742 1.23431 0.99719 1.04346 0.91287 1.22218 1.02056 0.97427 0.96343 0.84934 1.22023 0.80812 0.86698 0.76947 1.90529 1.47147 1.45443 1.59456 1.86727 1.33424 1.42376 1.61717 1.18805 0.91810 0.80036 0.86793 0.91094 1.21251 1.04785 1.05567 1.26954 0.90778 1.25170 0.96422 0.95386 0.96126 1.70041 1.13552 1.22812 1.39174 0.86503 0.79300 0.81155 0.80704 1.20167 1.20702 1.19400 1.22786 0.87483 0.92743 0.94415 1.21197 1.03571 1.09713 0.94015 1.21491 0.98326 1.03756 1.00566 1.23826 1.01230 1.05008 0.85068 1.84476 1.32146 1.53478 1.30184 0.89507 0.93585 0.93722 0.87229 0.87182 0.92208 0.84951 0.85160 0.80016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.88 101.05 1.10 1.43 16 2 O -0.36 -5.12 10.96 -35.23 -0.39 -5.51 16 3 C 0.04 0.66 5.95 -26.73 -0.16 0.50 16 4 H 0.13 1.89 7.46 -51.93 -0.39 1.50 16 5 C -0.15 -2.32 10.18 -26.73 -0.27 -2.60 16 6 C -0.16 -2.91 6.25 -91.78 -0.57 -3.48 16 7 H 0.13 2.27 8.14 -51.93 -0.42 1.85 16 8 C 0.49 11.15 7.71 36.00 0.28 11.43 16 9 O -0.53 -12.82 15.48 -18.75 -0.29 -13.11 16 10 O -0.33 -8.42 9.26 -41.29 -0.38 -8.80 16 11 C 0.28 7.26 2.58 -29.03 -0.07 7.18 16 12 H 0.07 1.81 7.15 -51.93 -0.37 1.44 16 13 C -0.55 -15.15 8.90 -34.44 -0.31 -15.45 16 14 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 15 C 0.08 2.16 5.24 -17.82 -0.09 2.06 16 16 N -0.82 -22.72 10.45 55.43 0.58 -22.14 16 17 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 C 0.08 2.00 5.68 -35.62 -0.20 1.80 16 22 C -0.27 -5.93 10.80 -39.70 -0.43 -6.36 16 23 C -0.22 -4.43 10.91 -39.70 -0.43 -4.86 16 24 C -0.08 -1.69 12.09 29.42 0.36 -1.33 16 25 O -0.11 -2.80 8.63 4.46 0.04 -2.77 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 30 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.13 2.67 8.06 -52.49 -0.42 2.24 16 33 H 0.13 2.14 8.06 -52.48 -0.42 1.72 16 34 H 0.18 2.94 8.06 -52.49 -0.42 2.52 16 LS Contribution 306.56 15.07 4.62 4.62 Total: -1.00 -31.40 306.56 -5.76 -37.17 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.11 Total: 4.50 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -0.81 Total: -9.68 kcal Atomic # 7 Polarization: -22.72 SS G_CDS: 0.58 Total: -22.14 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -1.02 Total: -30.19 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.40 -5.76 -37.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123367713.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.164 kcal (2) G-P(sol) polarization free energy of solvation -31.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds