Wall clock time and date at job start Mon Mar 30 2020 01:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20763 * 119.99349 * 2 1 4 4 C 1.50701 * 120.00240 * 180.02562 * 2 1 3 5 5 C 1.52996 * 109.46972 * 180.02562 * 4 2 1 6 6 C 1.50696 * 109.47298 * 179.97438 * 5 4 2 7 7 O 1.20833 * 119.99655 * 359.97438 * 6 5 4 8 8 O 1.34222 * 120.00432 * 180.27351 * 6 5 4 9 9 C 1.45201 * 117.00137 * 179.71953 * 8 6 5 10 10 H 1.08993 * 109.47491 * 330.00073 * 9 8 6 11 11 C 1.50706 * 109.46887 * 90.00045 * 9 8 6 12 12 H 1.08001 * 119.99914 * 239.99856 * 11 9 8 13 13 C 1.37878 * 119.99966 * 60.00384 * 11 9 8 14 14 N 1.31520 * 119.99989 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 120.00079 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47014 * 89.99290 * 15 13 11 17 17 H 1.48495 * 109.47169 * 209.99697 * 15 13 11 18 18 H 1.48498 * 109.46855 * 329.99737 * 15 13 11 19 19 C 1.50704 * 109.46907 * 209.99697 * 9 8 6 20 20 C 1.34516 * 125.78433 * 145.00355 * 19 9 8 21 21 C 1.41385 * 106.84086 * 179.97438 * 20 19 9 22 22 C 1.34521 * 106.83744 * 0.02562 * 21 20 19 23 23 O 1.34299 * 125.79250 * 324.69650 * 19 9 8 24 24 H 1.09002 * 109.46946 * 239.99118 * 1 2 3 25 25 H 1.08994 * 109.47241 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46797 * 119.99703 * 1 2 3 27 27 H 1.08994 * 109.47178 * 59.99808 * 4 2 1 28 28 H 1.09006 * 109.46629 * 299.99612 * 4 2 1 29 29 H 1.09000 * 109.47764 * 59.99413 * 5 4 2 30 30 H 1.09006 * 109.46938 * 299.99191 * 5 4 2 31 31 H 0.97003 * 119.99499 * 180.02562 * 14 13 11 32 32 H 1.07996 * 126.58313 * 0.03006 * 20 19 9 33 33 H 1.07992 * 126.58013 * 179.97438 * 21 20 19 34 34 H 1.07996 * 125.78786 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2606 -1.3051 -0.0006 5 6 3.7648 -1.0254 0.0002 6 6 4.5184 -2.3304 0.0002 7 8 3.9143 -3.3769 0.0002 8 8 5.8606 -2.3304 0.0064 9 6 6.5198 -3.6241 0.0124 10 1 5.8895 -4.3507 0.5249 11 6 6.7544 -4.0749 -1.4064 12 1 6.3162 -4.9967 -1.7596 13 6 7.5285 -3.3105 -2.2535 14 7 8.0617 -2.1878 -1.8235 15 14 7.8199 -3.8696 -4.0119 16 1 6.7561 -3.3184 -4.8893 17 1 9.1443 -3.3817 -4.4734 18 1 7.7908 -5.3531 -4.0708 19 6 7.8410 -3.5113 0.7286 20 6 8.4027 -4.4617 1.4972 21 6 9.6291 -3.9373 1.9662 22 6 9.7431 -2.6976 1.4565 23 8 8.6599 -2.4472 0.7031 24 1 -0.3633 -0.5140 0.8899 25 1 -0.3633 1.0276 0.0005 26 1 -0.3633 -0.5138 -0.8901 27 1 1.9973 -1.8763 -0.8908 28 1 1.9973 -1.8770 0.8893 29 1 4.0278 -0.4543 0.8906 30 1 4.0284 -0.4533 -0.8894 31 1 8.6060 -1.6499 -2.4197 32 1 7.9955 -5.4382 1.7137 33 1 10.3378 -4.4360 2.6106 34 1 10.5683 -2.0206 1.6210 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123369517.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:29 Heat of formation + Delta-G solvation = -113.213008 kcal Electronic energy + Delta-G solvation = -20040.418783 eV Core-core repulsion = 16712.565541 eV Total energy + Delta-G solvation = -3327.853242 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.30757 -39.69310 -38.92399 -35.56428 -32.97495 -32.71677 -31.82832 -30.34807 -29.73697 -26.60690 -25.27169 -23.00325 -20.71864 -19.91114 -19.44697 -19.28076 -17.17550 -16.62252 -16.42437 -15.92575 -15.38860 -15.04353 -14.77988 -14.70603 -14.44279 -14.42748 -13.32259 -13.06030 -12.56750 -12.32022 -12.14310 -11.94345 -11.84804 -11.72849 -11.39350 -11.30596 -11.12525 -11.00676 -10.89772 -10.37279 -9.83352 -9.66345 -9.51342 -9.07489 -8.82813 -8.75678 -7.33771 -6.22376 -4.44871 1.96083 2.91564 3.19380 3.24568 3.26678 3.30998 3.54588 3.75388 4.25049 4.27112 4.31317 4.87086 5.05208 5.10292 5.17433 5.34260 5.44053 5.60530 5.78930 5.90677 5.93319 5.99330 6.06087 6.19687 6.37559 6.47009 6.81056 6.90129 7.20990 7.48193 7.50336 7.62073 7.78399 7.81531 8.41700 8.58059 8.97166 9.29224 10.76722 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.017761 B = 0.005889 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.084284 B = 4753.250218 C = 5618.469809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.354 3.646 3 O -0.459 6.459 4 C -0.159 4.159 5 C -0.109 4.109 6 C 0.460 3.540 7 O -0.536 6.536 8 O -0.334 6.334 9 C 0.278 3.722 10 H 0.071 0.929 11 C -0.550 4.550 12 H 0.074 0.926 13 C 0.080 3.920 14 N -0.826 5.826 15 Si 0.898 3.102 16 H -0.276 1.276 17 H -0.282 1.282 18 H -0.269 1.269 19 C 0.081 3.919 20 C -0.265 4.265 21 C -0.221 4.221 22 C -0.082 4.082 23 O -0.116 6.116 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.268 0.732 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.772 2.302 4.450 9.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.230 3.770 3 O -0.333 6.333 4 C -0.197 4.197 5 C -0.147 4.147 6 C 0.304 3.696 7 O -0.428 6.428 8 O -0.248 6.248 9 C 0.226 3.774 10 H 0.089 0.911 11 C -0.586 4.586 12 H 0.092 0.908 13 C -0.131 4.131 14 N -0.459 5.459 15 Si 0.724 3.276 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.194 1.194 19 C 0.027 3.973 20 C -0.284 4.284 21 C -0.241 4.241 22 C -0.151 4.151 23 O -0.008 6.008 24 H 0.110 0.890 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.078 0.922 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -7.490 2.985 4.257 9.118 hybrid contribution 0.493 -0.710 -0.930 1.270 sum -6.998 2.275 3.327 8.075 Atomic orbital electron populations 1.22308 0.94469 1.04678 1.04638 1.24676 0.92002 0.90257 0.70106 1.90428 1.72065 1.35180 1.35640 1.21922 0.94534 0.97031 1.06168 1.21090 0.92657 0.94739 1.06175 1.23134 0.83153 0.90781 0.72542 1.90536 1.70014 1.34469 1.47770 1.86733 1.18105 1.39299 1.80702 1.18794 0.82857 0.80154 0.95575 0.91111 1.21246 1.33581 1.09187 0.94537 0.90778 1.25177 0.94072 0.94572 0.99298 1.70056 1.28720 1.11507 1.35585 0.86493 0.77795 0.79447 0.83854 1.20177 1.20784 1.19393 1.22831 0.93834 0.85817 0.94773 1.21161 0.98612 1.01507 1.07131 1.21493 0.99547 0.96393 1.06646 1.23798 0.93473 0.98674 0.99145 1.84420 1.25256 1.38248 1.52892 0.88973 0.90221 0.88922 0.87440 0.87644 0.88224 0.87834 0.92230 0.84937 0.85155 0.80019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.60 10.26 36.01 0.37 -1.23 16 2 C 0.35 4.22 7.27 -29.03 -0.21 4.01 16 3 O -0.46 -7.20 16.71 6.00 0.10 -7.10 16 4 C -0.16 -2.06 4.93 -27.88 -0.14 -2.20 16 5 C -0.11 -1.83 5.10 -27.89 -0.14 -1.97 16 6 C 0.46 10.00 7.92 36.00 0.29 10.29 16 7 O -0.54 -12.29 15.20 -18.76 -0.29 -12.58 16 8 O -0.33 -8.44 9.25 -41.99 -0.39 -8.83 16 9 C 0.28 7.22 2.58 -29.03 -0.07 7.14 16 10 H 0.07 1.79 7.15 -51.93 -0.37 1.41 16 11 C -0.55 -15.10 8.91 -34.44 -0.31 -15.41 16 12 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 13 C 0.08 2.16 5.24 -17.82 -0.09 2.06 16 14 N -0.83 -22.94 10.62 55.43 0.59 -22.35 16 15 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 C 0.08 2.03 5.59 -35.62 -0.20 1.83 16 20 C -0.26 -5.90 10.81 -39.70 -0.43 -6.33 16 21 C -0.22 -4.41 10.91 -39.70 -0.43 -4.85 16 22 C -0.08 -1.68 12.09 29.42 0.36 -1.33 16 23 O -0.12 -2.92 8.87 2.21 0.02 -2.90 16 24 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 26 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.11 1.35 8.10 -51.93 -0.42 0.93 16 28 H 0.11 1.24 8.10 -51.93 -0.42 0.82 16 29 H 0.10 1.58 8.10 -51.93 -0.42 1.16 16 30 H 0.10 1.79 8.10 -51.93 -0.42 1.37 16 31 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.13 2.67 8.06 -52.49 -0.42 2.25 16 33 H 0.13 2.14 8.06 -52.49 -0.42 1.72 16 34 H 0.18 2.94 8.06 -52.49 -0.42 2.52 16 LS Contribution 307.36 15.07 4.63 4.63 Total: -1.00 -32.56 307.36 -5.51 -38.06 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -4.13 Total: 3.22 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -1.02 Total: -7.98 kcal Atomic # 7 Polarization: -22.94 SS G_CDS: 0.59 Total: -22.35 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.55 Total: -31.41 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.56 -5.51 -38.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123369517.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.153 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds