Wall clock time and date at job start Mon Mar 30 2020 01:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81001 * 109.46719 * 2 1 4 4 C 1.76205 * 99.99576 * 180.02562 * 3 2 1 5 5 C 1.39635 * 120.57801 * 0.24964 * 4 3 2 6 6 C 1.38188 * 118.42732 * 180.26519 * 5 4 3 7 7 C 1.38857 * 119.50640 * 359.46250 * 6 5 4 8 8 N 1.31352 * 121.14491 * 0.29994 * 7 6 5 9 9 C 1.32958 * 121.70823 * 359.97438 * 8 7 6 10 10 C 1.47520 * 119.81506 * 179.97438 * 9 8 7 11 11 O 1.21631 * 119.99825 * 163.64550 * 10 9 8 12 12 N 1.34777 * 120.00254 * 343.64176 * 10 9 8 13 13 C 1.46497 * 119.99692 * 182.57307 * 12 10 9 14 14 C 1.36821 * 119.99845 * 2.56976 * 12 10 9 15 15 H 1.08004 * 120.00078 * 314.74578 * 14 12 10 16 16 C 1.39064 * 120.00001 * 134.75499 * 14 12 10 17 17 N 1.31350 * 119.99938 * 4.23554 * 16 14 12 18 18 Si 1.86799 * 120.00140 * 184.24160 * 16 14 12 19 19 H 1.48497 * 109.47145 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.47159 * 119.99640 * 18 16 14 21 21 H 1.48500 * 109.47116 * 239.99283 * 18 16 14 22 22 H 1.09000 * 109.47408 * 59.99809 * 1 2 3 23 23 H 1.09004 * 109.47178 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46974 * 299.99523 * 1 2 3 25 25 H 1.08998 * 109.46609 * 239.99854 * 2 1 3 26 26 H 1.08998 * 109.46892 * 120.00213 * 2 1 3 27 27 H 1.08008 * 120.78379 * 0.02562 * 5 4 3 28 28 H 1.08003 * 120.24667 * 179.74169 * 6 5 4 29 29 H 1.08000 * 119.42667 * 180.27509 * 7 6 5 30 30 H 1.08998 * 109.47908 * 5.26753 * 13 12 10 31 31 H 1.09003 * 109.47477 * 125.27326 * 13 12 10 32 32 H 1.09008 * 109.47121 * 245.26844 * 13 12 10 33 33 H 0.97008 * 120.00292 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1332 1.7065 0.0000 4 6 3.8713 1.4166 -0.0008 5 6 4.3741 0.1139 -0.0064 6 6 5.7447 -0.0622 -0.0012 7 6 6.5770 1.0493 -0.0019 8 7 6.0844 2.2669 -0.0016 9 6 4.7738 2.4905 -0.0011 10 6 4.2660 3.8756 -0.0002 11 8 3.1076 4.0988 -0.2963 12 7 5.0856 4.8936 0.3289 13 6 4.5672 6.2627 0.3846 14 6 6.4018 4.6485 0.6110 15 1 6.6716 3.8253 1.2560 16 6 7.3922 5.4593 0.0673 17 7 7.0614 6.5095 -0.6488 18 14 9.1930 5.0547 0.3552 19 1 9.2981 3.8302 1.1886 20 1 9.8635 4.8249 -0.9498 21 1 9.8489 6.1878 1.0559 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.7075 -0.7359 -0.0108 28 1 6.1654 -1.0569 -0.0011 29 1 7.6480 0.9101 -0.0023 30 1 3.4892 6.2499 0.2234 31 1 4.7833 6.6936 1.3622 32 1 5.0433 6.8633 -0.3905 33 1 7.7522 7.0750 -1.0284 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142762841.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:28 Heat of formation + Delta-G solvation = 3.111461 kcal Electronic energy + Delta-G solvation = -18048.688187 eV Core-core repulsion = 15200.924774 eV Total energy + Delta-G solvation = -2847.763413 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.31761 -39.60968 -36.73882 -34.16332 -33.46809 -33.00584 -32.27685 -28.43804 -26.85301 -25.29867 -24.48913 -23.71073 -21.29708 -19.73119 -18.24731 -17.91116 -17.23834 -16.88419 -16.13175 -16.05699 -15.96510 -15.62410 -15.50150 -14.71790 -14.63616 -14.23085 -13.70275 -13.51178 -13.07681 -12.99400 -12.96568 -12.78332 -12.50754 -12.42334 -12.28737 -11.98179 -11.48504 -11.24038 -10.97691 -10.38215 -10.36795 -9.89901 -9.41870 -8.37043 -8.11395 -5.97766 -0.22332 0.30534 0.68958 1.45904 1.47496 1.61059 1.63011 2.03067 2.37188 2.83748 2.97839 3.19613 3.73235 3.89156 4.03218 4.04748 4.06109 4.17318 4.49731 4.56355 4.61968 4.78482 4.88102 4.88846 4.93012 5.01308 5.09804 5.24537 5.36606 5.63892 5.75286 6.03947 6.50795 7.04226 7.23271 7.51812 7.94138 8.83540 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026385 B = 0.006934 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.962225 B = 4037.207433 C = 5006.354669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.152 4.152 3 S -0.063 6.063 4 C -0.120 4.120 5 C -0.104 4.104 6 C -0.120 4.120 7 C 0.057 3.943 8 N -0.430 5.430 9 C 0.079 3.921 10 C 0.488 3.512 11 O -0.602 6.602 12 N -0.435 5.435 13 C 0.089 3.911 14 C -0.303 4.303 15 H 0.100 0.900 16 C -0.004 4.004 17 N -0.912 5.912 18 Si 0.991 3.009 19 H -0.252 1.252 20 H -0.282 1.282 21 H -0.281 1.281 22 H 0.056 0.944 23 H 0.097 0.903 24 H 0.057 0.943 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.173 0.827 28 H 0.187 0.813 29 H 0.182 0.818 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.513 -16.517 2.157 17.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.300 4.300 3 S 0.181 5.819 4 C -0.237 4.237 5 C -0.135 4.135 6 C -0.142 4.142 7 C -0.106 4.106 8 N -0.140 5.140 9 C -0.064 4.064 10 C 0.277 3.723 11 O -0.491 6.491 12 N -0.151 5.151 13 C -0.053 4.053 14 C -0.432 4.432 15 H 0.118 0.882 16 C -0.204 4.204 17 N -0.552 5.552 18 Si 0.814 3.186 19 H -0.176 1.176 20 H -0.207 1.207 21 H -0.207 1.207 22 H 0.076 0.924 23 H 0.116 0.884 24 H 0.077 0.923 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.190 0.810 28 H 0.204 0.796 29 H 0.199 0.801 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.242 -14.407 1.944 15.144 hybrid contribution 1.156 -1.120 -0.064 1.611 sum -3.086 -15.527 1.880 15.942 Atomic orbital electron populations 1.21464 0.91045 1.03879 1.02579 1.24051 1.01697 0.98153 1.06118 1.87326 0.95236 1.09149 1.90151 1.23232 0.99457 0.97163 1.03848 1.21941 0.97470 0.94201 0.99928 1.22658 0.92867 1.01933 0.96733 1.23678 1.02429 0.87400 0.97130 1.68481 1.12529 1.25172 1.07853 1.20769 0.89594 0.92942 1.03097 1.18539 0.86013 0.85863 0.81837 1.90543 1.18864 1.83974 1.55672 1.43552 1.09715 1.05530 1.56331 1.21720 0.97171 0.84609 1.01850 1.19788 0.80037 1.15006 1.28326 0.88242 1.26381 1.04430 0.95019 0.94612 1.69864 1.34835 1.15612 1.34867 0.84909 0.76945 0.78739 0.77991 1.17565 1.20749 1.20709 0.92443 0.88429 0.92346 0.88505 0.88439 0.80962 0.79596 0.80116 0.93266 0.93763 0.90096 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.92 71.98 0.71 -1.68 16 2 C -0.15 -3.32 4.90 71.98 0.35 -2.96 16 3 S -0.06 -2.29 19.11 -56.49 -1.08 -3.37 16 4 C -0.12 -4.57 6.17 23.10 0.14 -4.42 16 5 C -0.10 -2.79 9.27 22.60 0.21 -2.58 16 6 C -0.12 -2.84 10.10 22.41 0.23 -2.62 16 7 C 0.06 1.81 11.17 84.91 0.95 2.76 16 8 N -0.43 -18.90 6.69 -184.49 -1.23 -20.13 16 9 C 0.08 3.72 6.57 41.92 0.28 4.00 16 10 C 0.49 26.79 7.49 86.69 0.65 27.44 16 11 O -0.60 -34.13 13.36 -4.13 -0.06 -34.19 16 12 N -0.44 -24.54 2.93 -662.56 -1.94 -26.47 16 13 C 0.09 4.78 9.86 127.77 1.26 6.04 16 14 C -0.30 -16.63 7.35 84.11 0.62 -16.02 16 15 H 0.10 5.38 6.32 -2.91 -0.02 5.36 16 16 C 0.00 -0.23 5.42 84.96 0.46 0.23 16 17 N -0.91 -51.56 10.88 21.68 0.24 -51.32 16 18 Si 0.99 42.22 29.56 68.60 2.03 44.25 16 19 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 20 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 22 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 24 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.10 1.82 7.56 -2.40 -0.02 1.80 16 26 H 0.10 1.79 7.58 -2.40 -0.02 1.77 16 27 H 0.17 3.17 5.66 -2.91 -0.02 3.16 16 28 H 0.19 2.38 8.06 -2.91 -0.02 2.35 16 29 H 0.18 4.47 8.06 -2.91 -0.02 4.44 16 30 H 0.05 2.55 6.93 -2.39 -0.02 2.53 16 31 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.08 4.58 5.95 -2.38 -0.01 4.57 16 33 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 Total: -1.00 -72.44 289.07 4.94 -67.50 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 1.12 Total: 13.53 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 5.86 Total: 10.19 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -2.94 Total: -97.93 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.06 Total: -34.19 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -1.08 Total: -3.37 kcal Total: -72.44 4.94 -67.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142762841.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.610 kcal (2) G-P(sol) polarization free energy of solvation -72.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds