Wall clock time and date at job start Mon Mar 30 2020 01:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35900 * 117.00086 * 2 1 4 4 C 1.38740 * 120.05712 * 180.02562 * 3 2 1 5 5 C 1.38139 * 119.94681 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05338 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94136 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.46992 * 89.99944 * 7 6 5 9 9 C 1.34779 * 119.99872 * 179.97438 * 8 7 6 10 10 S 1.71198 * 120.00142 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99768 * 180.02562 * 9 8 7 12 12 C 1.37075 * 119.99323 * 180.02562 * 11 9 8 13 13 H 1.07996 * 120.00751 * 0.02562 * 12 11 9 14 14 C 1.38881 * 119.99269 * 180.02562 * 12 11 9 15 15 N 1.31475 * 119.99987 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99404 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47742 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47021 * 120.00040 * 16 14 12 19 19 H 1.48507 * 109.47076 * 239.99625 * 16 14 12 20 20 C 1.38261 * 120.11222 * 0.25270 * 6 5 4 21 21 C 1.38144 * 120.05633 * 359.45047 * 20 6 5 22 22 H 1.09000 * 109.47106 * 300.00137 * 1 2 3 23 23 H 1.09000 * 109.47348 * 59.99680 * 1 2 3 24 24 H 1.08993 * 109.47158 * 180.02562 * 1 2 3 25 25 H 1.07998 * 120.02343 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.97195 * 180.02562 * 5 4 3 27 27 H 1.09002 * 109.47060 * 210.00157 * 7 6 5 28 28 H 1.09001 * 109.47380 * 330.00244 * 7 6 5 29 29 H 0.97000 * 120.00420 * 0.02562 * 8 7 6 30 30 H 0.96992 * 119.99896 * 0.02562 * 11 9 8 31 31 H 0.97009 * 120.00143 * 180.02562 * 15 14 12 32 32 H 1.07999 * 119.97190 * 179.70663 * 20 6 5 33 33 H 1.08001 * 120.03140 * 180.25189 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 7 4.2073 5.4550 -1.3781 9 6 4.8083 6.6362 -1.6233 10 16 5.3140 7.6260 -0.3213 11 7 5.0113 7.0381 -2.8937 12 6 5.6231 8.2391 -3.1431 13 1 5.9428 8.8632 -2.3217 14 6 5.8317 8.6534 -4.4521 15 7 5.4429 7.8935 -5.4520 16 14 6.6660 10.2898 -4.7919 17 1 7.0058 10.9489 -3.5054 18 1 7.9081 10.0594 -5.5727 19 1 5.7480 11.1618 -5.5681 20 6 1.9212 3.6047 0.0080 21 6 1.2916 2.3751 0.0012 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 4.0208 0.3799 -0.0014 26 1 5.1346 2.5749 -0.0008 27 1 3.3584 5.7457 0.5177 28 1 4.9444 4.9376 0.5160 29 1 3.9204 4.8944 -2.1159 30 1 4.7244 6.4774 -3.6314 31 1 5.5889 8.1827 -6.3664 32 1 1.3343 4.5114 0.0140 33 1 0.2130 2.3202 0.0021 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200362860.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:14 Heat of formation + Delta-G solvation = -24.987179 kcal Electronic energy + Delta-G solvation = -16841.694805 eV Core-core repulsion = 13992.712944 eV Total energy + Delta-G solvation = -2848.981861 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.16986 -39.69458 -38.57909 -36.40260 -34.00198 -32.13467 -31.61104 -28.59946 -27.47380 -25.87382 -24.10136 -23.63298 -22.25425 -20.57442 -19.28180 -18.98237 -17.31173 -17.26486 -16.68407 -16.61144 -16.17814 -15.64396 -15.57367 -15.38149 -14.94785 -14.62797 -14.39941 -13.71432 -13.52548 -13.50997 -12.84926 -12.76006 -12.71457 -12.45821 -12.08685 -11.98496 -11.88787 -11.77149 -11.24478 -10.08263 -9.99670 -9.22188 -8.80648 -8.73062 -8.19868 -6.20037 0.26406 0.35395 0.81115 1.41403 1.52670 1.53516 1.61835 2.14365 2.34940 2.42593 2.87732 2.93614 3.35816 3.75414 3.80863 3.93237 4.22284 4.38775 4.40210 4.42896 4.60161 4.72902 4.77278 4.85239 5.06403 5.21973 5.27337 5.31474 5.44024 5.64401 5.67733 5.75125 6.40727 6.46243 6.51242 6.98930 7.20076 8.34127 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.035080 B = 0.003632 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.985267 B = 7708.060933 C = 8136.446910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.125 3.875 4 C -0.162 4.162 5 C -0.062 4.062 6 C -0.148 4.148 7 C 0.198 3.802 8 N -0.693 5.693 9 C 0.479 3.521 10 S -0.827 6.827 11 N -0.475 5.475 12 C -0.321 4.321 13 H 0.120 0.880 14 C 0.005 3.995 15 N -0.893 5.893 16 Si 1.006 2.994 17 H -0.268 1.268 18 H -0.265 1.265 19 H -0.265 1.265 20 C -0.063 4.063 21 C -0.209 4.209 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.120 0.880 25 H 0.143 0.857 26 H 0.138 0.862 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.398 0.602 30 H 0.399 0.601 31 H 0.290 0.710 32 H 0.134 0.866 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.293 -15.775 3.947 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.079 3.921 4 C -0.180 4.180 5 C -0.080 4.080 6 C -0.149 4.149 7 C 0.074 3.926 8 N -0.331 5.331 9 C 0.113 3.887 10 S -0.704 6.704 11 N -0.079 5.079 12 C -0.455 4.455 13 H 0.137 0.863 14 C -0.201 4.201 15 N -0.528 5.528 16 Si 0.828 3.172 17 H -0.192 1.192 18 H -0.190 1.190 19 H -0.189 1.189 20 C -0.081 4.081 21 C -0.228 4.228 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.138 0.862 25 H 0.161 0.839 26 H 0.155 0.845 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.235 0.765 30 H 0.236 0.764 31 H 0.100 0.900 32 H 0.152 0.848 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.849 -15.242 4.598 18.721 hybrid contribution -0.335 -0.118 -1.528 1.568 sum -10.184 -15.359 3.070 18.683 Atomic orbital electron populations 1.23359 0.76408 1.05648 1.02313 1.86052 1.23515 1.26650 1.88448 1.19254 0.92632 0.84704 0.95488 1.20605 0.91807 0.98837 1.06796 1.21050 1.00554 0.90764 0.95650 1.19765 0.94190 0.93903 1.07017 1.19968 0.99950 0.91654 0.80999 1.44197 1.62149 1.17259 1.09488 1.20645 0.92141 0.88285 0.87583 1.92548 1.78892 1.62622 1.36382 1.40965 1.44939 1.18540 1.03492 1.20676 1.34647 0.95436 0.94756 0.86262 1.26409 0.96383 1.03435 0.93903 1.69694 1.43350 1.38996 1.00776 0.84660 0.78012 0.75851 0.78722 1.19209 1.18974 1.18940 1.21061 0.93573 0.98078 0.95421 1.21432 1.01239 0.91477 1.08603 0.91605 0.91815 0.86221 0.83887 0.84456 0.91579 0.91563 0.76492 0.76406 0.89977 0.84826 0.83092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -6.34 10.50 -92.42 -0.97 -7.31 16 3 C 0.12 2.63 6.69 22.51 0.15 2.78 16 4 C -0.16 -3.49 9.99 22.37 0.22 -3.26 16 5 C -0.06 -1.43 9.69 22.25 0.22 -1.22 16 6 C -0.15 -3.77 5.25 -19.85 -0.10 -3.87 16 7 C 0.20 6.44 5.25 85.63 0.45 6.89 16 8 N -0.69 -25.10 5.55 -353.90 -1.97 -27.07 16 9 C 0.48 22.54 7.94 179.05 1.42 23.97 16 10 S -0.83 -45.78 27.15 -56.49 -1.53 -47.31 16 11 N -0.47 -23.09 5.29 -193.55 -1.02 -24.11 16 12 C -0.32 -17.08 9.51 84.03 0.80 -16.28 16 13 H 0.12 6.93 6.22 -2.91 -0.02 6.91 16 14 C 0.00 0.23 5.50 84.90 0.47 0.70 16 15 N -0.89 -43.78 13.05 21.65 0.28 -43.49 16 16 Si 1.01 40.05 29.55 68.60 2.03 42.08 16 17 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 18 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 20 C -0.06 -1.41 9.69 22.25 0.22 -1.20 16 21 C -0.21 -4.09 9.04 22.37 0.20 -3.88 16 22 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 23 H 0.06 0.59 7.66 -2.39 -0.02 0.58 16 24 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 26 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 27 H 0.07 2.34 7.93 -2.39 -0.02 2.32 16 28 H 0.07 2.36 7.93 -2.39 -0.02 2.34 16 29 H 0.40 12.39 8.48 -92.71 -0.79 11.61 16 30 H 0.40 18.16 7.91 -92.71 -0.73 17.43 16 31 H 0.29 13.12 8.31 -92.70 -0.77 12.35 16 32 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 33 H 0.15 2.14 6.30 -2.91 -0.02 2.13 16 Total: -1.00 -66.59 301.50 1.60 -64.99 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: -0.37 Total: 36.32 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 5.15 Total: 5.91 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -2.71 Total: -94.67 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.97 Total: -7.31 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Atomic # 16 Polarization: -45.78 SS G_CDS: -1.53 Total: -47.31 kcal Total: -66.59 1.60 -64.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200362860.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.007 kcal (2) G-P(sol) polarization free energy of solvation -66.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds