Wall clock time and date at job start Mon Mar 30 2020 00:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 119.99632 * 2 1 4 4 C 1.52998 * 109.47137 * 125.00022 * 3 2 1 5 5 H 1.09001 * 109.47411 * 55.00017 * 4 3 2 6 6 O 1.42906 * 109.47205 * 294.99818 * 4 3 2 7 7 C 1.42900 * 113.99774 * 90.00138 * 6 4 3 8 8 C 1.50704 * 109.46698 * 180.02562 * 7 6 4 9 9 H 1.08001 * 119.99985 * 359.97438 * 8 7 6 10 10 C 1.37872 * 119.99603 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00642 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99849 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47127 * 90.00328 * 12 10 8 14 14 H 1.48500 * 109.47412 * 210.00096 * 12 10 8 15 15 H 1.48499 * 109.47281 * 330.00339 * 12 10 8 16 16 C 1.50696 * 109.47396 * 174.99920 * 4 3 2 17 17 C 1.38247 * 119.98658 * 265.00270 * 16 4 3 18 18 C 1.38216 * 120.01497 * 179.97438 * 17 16 4 19 19 C 1.38357 * 119.98603 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 120.01134 * 180.02562 * 19 18 17 21 21 C 1.38347 * 119.97107 * 0.28224 * 19 18 17 22 22 C 1.38219 * 119.98930 * 359.40143 * 21 19 18 23 23 H 1.08002 * 119.99522 * 180.02562 * 1 2 3 24 24 H 1.07994 * 120.00135 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.00135 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47543 * 4.99689 * 3 2 1 27 27 H 1.09003 * 109.46922 * 244.99754 * 3 2 1 28 28 H 1.09004 * 109.46636 * 299.99900 * 7 6 4 29 29 H 1.08995 * 109.47586 * 60.00284 * 7 6 4 30 30 H 0.96999 * 120.00492 * 179.97438 * 11 10 8 31 31 H 1.08003 * 119.99321 * 359.97438 * 17 16 4 32 32 H 1.08002 * 120.00776 * 180.02562 * 18 17 16 33 33 H 1.08000 * 120.00661 * 179.71600 * 21 19 18 34 34 H 1.07997 * 119.99445 * 180.32231 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 1 3.6827 0.4574 1.1404 6 8 2.2971 1.3226 2.4054 7 6 2.0266 0.0132 2.9097 8 6 1.2477 0.1212 4.1953 9 1 0.9858 1.0926 4.5881 10 6 0.8694 -1.0201 4.8699 11 7 1.1887 -2.2030 4.3920 12 14 -0.0956 -0.8864 6.4639 13 1 -1.5498 -0.8812 6.1632 14 1 0.2254 -2.0449 7.3356 15 1 0.2705 0.3733 7.1599 16 6 3.8746 2.5826 1.1121 17 6 5.1205 2.5454 0.5142 18 6 5.8909 3.6912 0.4496 19 6 5.4151 4.8754 0.9841 20 17 6.3819 6.3150 0.9028 21 6 4.1709 4.9104 1.5880 22 6 3.3987 3.7656 1.6461 23 1 -0.5399 -0.9354 0.0004 24 1 -0.5400 0.9352 -0.0004 25 1 1.8500 -0.9352 0.0004 26 1 1.3585 2.1317 0.0895 27 1 2.6213 1.4026 -0.9314 28 1 1.4431 -0.5447 2.1774 29 1 2.9668 -0.5055 3.0967 30 1 0.9229 -3.0060 4.8668 31 1 5.4920 1.6209 0.0974 32 1 6.8641 3.6621 -0.0179 33 1 3.8009 5.8334 2.0094 34 1 2.4252 3.7941 2.1129 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205621530.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:22 Heat of formation + Delta-G solvation = -20.878028 kcal Electronic energy + Delta-G solvation = -17382.598851 eV Core-core repulsion = 14499.458718 eV Total energy + Delta-G solvation = -2883.140132 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.51224 -37.42244 -36.32350 -33.96150 -32.76879 -31.50990 -30.96593 -28.10209 -26.88858 -23.60858 -22.90765 -22.11118 -20.59244 -19.41817 -17.16719 -16.37412 -16.08839 -15.29417 -14.99473 -14.70518 -14.43642 -13.98374 -13.74286 -13.39231 -13.36843 -12.85354 -12.50022 -11.90104 -11.72851 -11.53686 -11.47184 -11.12251 -10.89424 -10.85557 -10.80890 -10.55621 -10.37380 -10.04790 -9.41722 -9.05030 -8.94951 -8.72542 -8.45873 -7.95356 -6.12095 -4.12893 1.20437 1.38810 2.12639 2.81364 3.28864 3.34308 3.39167 3.71559 4.31039 4.60958 4.90607 4.94560 5.13826 5.24846 5.37180 5.44323 5.48302 5.61979 5.78239 5.79581 5.82879 5.98132 6.07356 6.27378 6.30962 6.37526 6.46233 6.71895 6.89371 7.10662 7.14073 7.27021 7.46014 7.77595 8.14142 8.53437 8.98826 9.51253 10.99212 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021773 B = 0.004540 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.681497 B = 6165.291444 C = 6978.255294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.145 4.145 3 C -0.105 4.105 4 C 0.128 3.872 5 H 0.064 0.936 6 O -0.382 6.382 7 C 0.190 3.810 8 C -0.512 4.512 9 H 0.064 0.936 10 C 0.058 3.942 11 N -0.898 5.898 12 Si 0.904 3.096 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.272 1.272 16 C -0.066 4.066 17 C -0.104 4.104 18 C -0.115 4.115 19 C -0.040 4.040 20 Cl -0.084 7.084 21 C -0.114 4.114 22 C -0.076 4.076 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.023 0.977 29 H 0.001 0.999 30 H 0.263 0.737 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.636 10.331 -10.186 15.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.163 4.163 3 C -0.142 4.142 4 C 0.069 3.931 5 H 0.082 0.918 6 O -0.301 6.301 7 C 0.116 3.884 8 C -0.551 4.551 9 H 0.083 0.917 10 C -0.143 4.143 11 N -0.537 5.537 12 Si 0.732 3.268 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.197 1.197 16 C -0.066 4.066 17 C -0.122 4.122 18 C -0.134 4.134 19 C -0.067 4.067 20 Cl -0.055 7.055 21 C -0.133 4.133 22 C -0.094 4.094 23 H 0.112 0.888 24 H 0.110 0.890 25 H 0.123 0.877 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.041 0.959 29 H 0.019 0.981 30 H 0.073 0.927 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.642 10.431 -10.046 15.932 hybrid contribution -0.301 -0.280 0.832 0.928 sum 6.342 10.151 -9.214 15.105 Atomic orbital electron populations 1.23661 0.95885 1.01338 1.01304 1.22695 0.96222 0.97714 0.99717 1.21244 0.98760 0.96498 0.97745 1.20649 0.91670 0.93513 0.87232 0.91838 1.87889 1.73610 1.32910 1.35729 1.20433 0.95146 0.78570 0.94240 1.21029 1.34515 0.93275 1.06246 0.91731 1.24899 0.96265 0.94915 0.98216 1.69952 1.46607 0.97427 1.39737 0.86392 0.80049 0.77744 0.82651 1.20484 1.21106 1.19669 1.20119 0.94254 0.95595 0.96646 1.20959 0.93555 0.98039 0.99633 1.20921 1.00425 0.91157 1.00849 1.20900 0.93732 0.88010 1.04037 1.98347 1.71398 1.38412 1.97343 1.21082 0.92895 0.99569 0.99763 1.21096 1.00478 0.90851 0.97002 0.88812 0.89014 0.87651 0.90911 0.91058 0.95892 0.98121 0.92716 0.85144 0.85211 0.85148 0.84134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 14.12 29.01 0.41 -2.68 16 2 C -0.15 -2.45 6.89 -36.03 -0.25 -2.70 16 3 C -0.11 -1.63 5.35 -27.89 -0.15 -1.78 16 4 C 0.13 2.26 2.53 -27.89 -0.07 2.19 16 5 H 0.06 1.12 7.70 -51.93 -0.40 0.72 16 6 O -0.38 -8.65 9.07 -35.23 -0.32 -8.97 16 7 C 0.19 4.97 5.27 36.01 0.19 5.16 16 8 C -0.51 -14.71 9.43 -34.44 -0.32 -15.03 16 9 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 11 N -0.90 -26.32 13.29 55.43 0.74 -25.59 16 12 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 C -0.07 -1.01 5.01 -104.62 -0.52 -1.54 16 17 C -0.10 -1.35 9.68 -39.59 -0.38 -1.73 16 18 C -0.11 -1.39 9.83 -39.55 -0.39 -1.78 16 19 C -0.04 -0.51 6.32 -39.50 -0.25 -0.76 16 20 Cl -0.08 -0.95 28.96 -51.86 -1.50 -2.46 16 21 C -0.11 -1.51 9.83 -39.55 -0.39 -1.90 16 22 C -0.08 -1.15 9.35 -39.59 -0.37 -1.52 16 23 H 0.09 1.51 8.06 -52.49 -0.42 1.09 16 24 H 0.09 1.44 7.84 -52.49 -0.41 1.03 16 25 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 26 H 0.07 1.14 7.79 -51.93 -0.40 0.74 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.02 0.62 5.50 -51.93 -0.29 0.33 16 29 H 0.00 0.03 8.08 -51.93 -0.42 -0.39 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 34 H 0.14 2.21 7.63 -52.49 -0.40 1.81 16 LS Contribution 310.35 15.07 4.68 4.68 Total: -1.00 -29.81 310.35 -8.43 -38.24 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.40 Total: 0.02 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -2.59 Total: -22.52 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.74 Total: -25.59 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -0.32 Total: -8.97 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.81 -8.43 -38.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205621530.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.358 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds