Wall clock time and date at job start Mon Mar 30 2020 00:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 119.99632 * 2 1 4 4 C 1.52998 * 109.47137 * 125.00022 * 3 2 1 5 5 H 1.09001 * 109.47411 * 55.00017 * 4 3 2 6 6 O 1.42906 * 109.47205 * 294.99818 * 4 3 2 7 7 C 1.42900 * 113.99774 * 90.00138 * 6 4 3 8 8 C 1.50704 * 109.46698 * 180.02562 * 7 6 4 9 9 H 1.08001 * 119.99985 * 359.97438 * 8 7 6 10 10 C 1.37872 * 119.99603 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00642 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99849 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47127 * 90.00328 * 12 10 8 14 14 H 1.48500 * 109.47412 * 210.00096 * 12 10 8 15 15 H 1.48499 * 109.47281 * 330.00339 * 12 10 8 16 16 C 1.50696 * 109.47396 * 174.99920 * 4 3 2 17 17 C 1.38247 * 119.98658 * 265.00270 * 16 4 3 18 18 C 1.38216 * 120.01497 * 179.97438 * 17 16 4 19 19 C 1.38357 * 119.98603 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 120.01134 * 180.02562 * 19 18 17 21 21 C 1.38347 * 119.97107 * 0.28224 * 19 18 17 22 22 C 1.38219 * 119.98930 * 359.40143 * 21 19 18 23 23 H 1.08002 * 119.99522 * 180.02562 * 1 2 3 24 24 H 1.07994 * 120.00135 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.00135 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47543 * 4.99689 * 3 2 1 27 27 H 1.09003 * 109.46922 * 244.99754 * 3 2 1 28 28 H 1.09004 * 109.46636 * 299.99900 * 7 6 4 29 29 H 1.08995 * 109.47586 * 60.00284 * 7 6 4 30 30 H 0.96999 * 120.00492 * 179.97438 * 11 10 8 31 31 H 1.08003 * 119.99321 * 359.97438 * 17 16 4 32 32 H 1.08002 * 120.00776 * 180.02562 * 18 17 16 33 33 H 1.08000 * 120.00661 * 179.71600 * 21 19 18 34 34 H 1.07997 * 119.99445 * 180.32231 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 1 3.6827 0.4574 1.1404 6 8 2.2971 1.3226 2.4054 7 6 2.0266 0.0132 2.9097 8 6 1.2477 0.1212 4.1953 9 1 0.9858 1.0926 4.5881 10 6 0.8694 -1.0201 4.8699 11 7 1.1887 -2.2030 4.3920 12 14 -0.0956 -0.8864 6.4639 13 1 -1.5498 -0.8812 6.1632 14 1 0.2254 -2.0449 7.3356 15 1 0.2705 0.3733 7.1599 16 6 3.8746 2.5826 1.1121 17 6 5.1205 2.5454 0.5142 18 6 5.8909 3.6912 0.4496 19 6 5.4151 4.8754 0.9841 20 17 6.3819 6.3150 0.9028 21 6 4.1709 4.9104 1.5880 22 6 3.3987 3.7656 1.6461 23 1 -0.5399 -0.9354 0.0004 24 1 -0.5400 0.9352 -0.0004 25 1 1.8500 -0.9352 0.0004 26 1 1.3585 2.1317 0.0895 27 1 2.6213 1.4026 -0.9314 28 1 1.4431 -0.5447 2.1774 29 1 2.9668 -0.5055 3.0967 30 1 0.9229 -3.0060 4.8668 31 1 5.4920 1.6209 0.0974 32 1 6.8641 3.6621 -0.0179 33 1 3.8009 5.8334 2.0094 34 1 2.4252 3.7941 2.1129 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205621530.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:21 Heat of formation + Delta-G solvation = -35.911331 kcal Electronic energy + Delta-G solvation = -17383.250744 eV Core-core repulsion = 14499.458718 eV Total energy + Delta-G solvation = -2883.792025 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.68191 -38.86191 -37.35658 -35.52090 -34.75489 -32.83126 -32.01282 -29.61477 -28.70157 -25.05004 -24.36700 -23.57845 -21.83906 -20.77733 -18.68373 -18.01244 -17.62390 -16.67279 -16.43069 -16.36537 -15.80560 -15.46118 -15.06811 -14.55155 -14.40384 -14.38561 -14.00930 -13.51336 -13.23372 -12.97962 -12.77028 -12.62429 -12.45492 -12.40230 -12.17596 -11.96403 -11.76043 -11.60864 -11.30556 -10.93649 -10.57848 -9.98443 -9.77181 -9.46793 -8.28587 -6.38611 0.12513 0.35088 1.14298 1.39943 1.41438 1.46836 1.53213 2.35029 2.63658 3.05724 3.12240 3.78786 3.88983 3.97904 4.06628 4.16741 4.40858 4.43735 4.50153 4.53548 4.72859 4.74453 4.95030 5.00095 5.04332 5.13218 5.23554 5.27691 5.35679 5.54337 5.63859 5.77913 5.82940 5.92626 6.03365 6.58995 6.87875 7.32075 8.82961 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021773 B = 0.004540 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.681497 B = 6165.291444 C = 6978.255294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.156 4.156 3 C -0.096 4.096 4 C 0.123 3.877 5 H 0.060 0.940 6 O -0.395 6.395 7 C 0.206 3.794 8 C -0.543 4.543 9 H 0.057 0.943 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.973 3.027 13 H -0.269 1.269 14 H -0.276 1.276 15 H -0.267 1.267 16 C -0.084 4.084 17 C -0.101 4.101 18 C -0.109 4.109 19 C -0.043 4.043 20 Cl -0.069 7.069 21 C -0.115 4.115 22 C -0.092 4.092 23 H 0.095 0.905 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.017 0.983 29 H -0.025 1.025 30 H 0.269 0.731 31 H 0.152 0.848 32 H 0.158 0.842 33 H 0.145 0.855 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.300 11.320 -10.405 17.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.174 4.174 3 C -0.134 4.134 4 C 0.065 3.935 5 H 0.078 0.922 6 O -0.315 6.315 7 C 0.132 3.868 8 C -0.581 4.581 9 H 0.075 0.925 10 C -0.187 4.187 11 N -0.567 5.567 12 Si 0.797 3.203 13 H -0.194 1.194 14 H -0.201 1.201 15 H -0.192 1.192 16 C -0.085 4.085 17 C -0.119 4.119 18 C -0.127 4.127 19 C -0.070 4.070 20 Cl -0.040 7.040 21 C -0.133 4.133 22 C -0.111 4.111 23 H 0.113 0.887 24 H 0.118 0.882 25 H 0.118 0.882 26 H 0.089 0.911 27 H 0.120 0.880 28 H 0.035 0.965 29 H -0.008 1.008 30 H 0.078 0.922 31 H 0.170 0.830 32 H 0.175 0.825 33 H 0.163 0.837 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.315 11.435 -10.285 17.030 hybrid contribution -0.417 -0.523 0.828 1.065 sum 6.898 10.911 -9.457 16.002 Atomic orbital electron populations 1.23815 0.96067 1.01870 1.01185 1.22854 0.96518 0.98255 0.99823 1.21192 0.98432 0.95565 0.98167 1.20880 0.91957 0.94849 0.85822 0.92181 1.87838 1.74607 1.30788 1.38297 1.20020 0.93339 0.79856 0.93624 1.21372 1.35670 0.93319 1.07761 0.92506 1.25798 0.96917 0.94341 1.01666 1.70052 1.47258 0.98161 1.41231 0.85332 0.78781 0.78046 0.78188 1.19382 1.20111 1.19169 1.20007 0.95258 0.94524 0.98685 1.21168 0.92431 0.99394 0.98897 1.21227 1.01200 0.90356 0.99908 1.21054 0.93630 0.88878 1.03428 1.98356 1.70834 1.37570 1.97232 1.21193 0.93051 0.99465 0.99635 1.21023 1.00403 0.91730 0.97921 0.88712 0.88168 0.88156 0.91124 0.88012 0.96521 1.00763 0.92246 0.83045 0.82477 0.83679 0.85776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.47 14.12 67.78 0.96 -5.52 16 2 C -0.16 -5.31 6.89 25.64 0.18 -5.14 16 3 C -0.10 -2.96 5.35 29.85 0.16 -2.80 16 4 C 0.12 4.36 2.53 29.85 0.08 4.44 16 5 H 0.06 2.14 7.70 -2.39 -0.02 2.13 16 6 O -0.40 -18.44 9.07 -148.98 -1.35 -19.79 16 7 C 0.21 11.16 5.27 71.24 0.38 11.54 16 8 C -0.54 -31.85 9.43 25.60 0.24 -31.61 16 9 H 0.06 3.33 7.81 -2.91 -0.02 3.30 16 10 C 0.01 0.65 5.46 84.65 0.46 1.11 16 11 N -0.93 -54.89 13.29 21.45 0.28 -54.60 16 12 Si 0.97 44.23 29.54 68.60 2.03 46.25 16 13 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 14 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 16 C -0.08 -2.55 5.01 -19.86 -0.10 -2.65 16 17 C -0.10 -2.43 9.68 22.27 0.22 -2.21 16 18 C -0.11 -2.33 9.83 22.29 0.22 -2.11 16 19 C -0.04 -1.01 6.32 22.32 0.14 -0.87 16 20 Cl -0.07 -1.40 28.96 -2.72 -0.08 -1.48 16 21 C -0.11 -2.90 9.83 22.29 0.22 -2.68 16 22 C -0.09 -2.78 9.35 22.27 0.21 -2.57 16 23 H 0.09 3.10 8.06 -2.91 -0.02 3.08 16 24 H 0.10 3.14 7.84 -2.91 -0.02 3.12 16 25 H 0.10 3.46 8.06 -2.91 -0.02 3.44 16 26 H 0.07 2.20 7.79 -2.39 -0.02 2.18 16 27 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.02 0.93 5.50 -2.38 -0.01 0.92 16 29 H -0.03 -1.47 8.08 -2.39 -0.02 -1.49 16 30 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 31 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 32 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 34 H 0.12 4.05 7.63 -2.91 -0.02 4.03 16 Total: -1.00 -63.78 310.35 5.31 -58.47 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 1.08 Total: 12.22 kcal Atomic # 6 Polarization: -44.42 SS G_CDS: 3.35 Total: -41.07 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.28 Total: -54.60 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -1.35 Total: -19.79 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -63.78 5.31 -58.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205621530.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.563 kcal (2) G-P(sol) polarization free energy of solvation -63.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds