Wall clock time and date at job start Mon Mar 30 2020 00:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 119.99881 * 2 1 4 4 H 1.09004 * 109.47245 * 245.00500 * 3 2 1 5 5 O 1.42894 * 109.47453 * 5.00471 * 3 2 1 6 6 C 1.42906 * 114.00143 * 270.00181 * 5 3 2 7 7 H 1.09000 * 109.47141 * 29.99548 * 6 5 3 8 8 C 1.50697 * 109.47176 * 149.99902 * 6 5 3 9 9 H 1.07994 * 120.00496 * 359.97438 * 8 6 5 10 10 C 1.37878 * 119.99687 * 179.97438 * 8 6 5 11 11 N 1.31518 * 120.00216 * 0.02562 * 10 8 6 12 12 Si 1.86797 * 120.00016 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47172 * 0.02562 * 12 10 8 14 14 H 1.48493 * 109.47304 * 120.00302 * 12 10 8 15 15 H 1.48502 * 109.47432 * 240.00422 * 12 10 8 16 16 C 1.53006 * 109.46752 * 269.99852 * 6 5 3 17 17 Cl 1.80295 * 109.47205 * 65.00009 * 16 6 5 18 18 C 1.50700 * 109.47101 * 125.00582 * 3 2 1 19 19 C 1.38234 * 119.99876 * 279.72756 * 18 3 2 20 20 C 1.38239 * 119.99733 * 179.81087 * 19 18 3 21 21 C 1.38228 * 120.00247 * 0.39418 * 20 19 18 22 22 C 1.38233 * 120.00064 * 359.85860 * 21 20 19 23 23 C 1.38232 * 120.00044 * 99.99747 * 18 3 2 24 24 H 1.07999 * 119.99886 * 180.02562 * 1 2 3 25 25 H 1.07999 * 119.99493 * 359.97438 * 1 2 3 26 26 H 1.07995 * 119.99962 * 180.02562 * 2 1 3 27 27 H 0.96999 * 120.00239 * 180.02562 * 11 10 8 28 28 H 1.09004 * 109.46579 * 184.99441 * 16 6 5 29 29 H 1.08992 * 109.47046 * 304.99625 * 16 6 5 30 30 H 1.08001 * 120.00170 * 359.97438 * 19 18 3 31 31 H 1.08003 * 119.99419 * 180.23177 * 20 19 18 32 32 H 1.08000 * 120.00023 * 179.83730 * 21 20 19 33 33 H 1.07997 * 120.00119 * 179.97438 * 22 21 20 34 34 H 1.07997 * 120.00596 * 359.97438 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 2.6213 1.4027 -0.9314 5 8 1.1394 2.3887 0.1175 6 6 0.6649 2.8864 -1.1352 7 1 0.6527 2.0780 -1.8662 8 6 -0.7302 3.4298 -0.9638 9 1 -1.2071 3.3979 0.0046 10 6 -1.3979 3.9677 -2.0436 11 7 -0.8175 4.0061 -3.2231 12 14 -3.1275 4.6407 -1.8314 13 1 -3.5512 4.4801 -0.4172 14 1 -3.1461 6.0809 -2.1927 15 1 -4.0602 3.8965 -2.7155 16 6 1.5904 4.0023 -1.6242 17 17 3.2234 3.3206 -1.9695 18 6 3.0205 1.3326 1.1638 19 6 2.5606 1.6440 2.4296 20 6 3.4378 1.6654 3.4978 21 6 4.7763 1.3834 3.2988 22 6 5.2372 1.0772 2.0321 23 6 4.3593 1.0520 0.9645 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5399 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 -1.2871 4.3849 -3.9827 28 1 1.1805 4.4419 -2.5335 29 1 1.6723 4.7697 -0.8545 30 1 1.5155 1.8679 2.5845 31 1 3.0777 1.9050 4.4875 32 1 5.4621 1.4027 4.1329 33 1 6.2831 0.8573 1.8765 34 1 4.7195 0.8126 -0.0251 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223308532.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:28 Heat of formation + Delta-G solvation = -17.464376 kcal Electronic energy + Delta-G solvation = -18057.538403 eV Core-core repulsion = 15174.546297 eV Total energy + Delta-G solvation = -2882.992105 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.18453 -37.38864 -34.84133 -33.70252 -32.35194 -30.81480 -30.55345 -28.88523 -25.55981 -25.03408 -22.30045 -21.18219 -20.91737 -18.97950 -16.99833 -16.55122 -15.81193 -15.27006 -14.81330 -14.60626 -14.05151 -13.70860 -13.30765 -13.07531 -12.76115 -12.44734 -12.22128 -11.95462 -11.82267 -11.14883 -11.11397 -10.97209 -10.82402 -10.69837 -10.57845 -10.37079 -9.88185 -9.41123 -9.30874 -8.79352 -8.60306 -8.56580 -8.38193 -8.17843 -6.33680 -4.39997 1.65999 1.73208 2.91793 3.15439 3.25084 3.30016 3.48185 4.08449 4.20161 4.78011 5.02377 5.18469 5.24409 5.34415 5.48430 5.61462 5.83431 5.88050 5.97591 6.19297 6.26902 6.36587 6.39239 6.50921 6.59124 6.74318 6.79901 6.88928 7.05712 7.25169 7.30899 7.35037 7.44026 7.63760 7.93673 8.36434 8.78130 9.28039 10.73356 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.023525 B = 0.006310 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.943174 B = 4436.301225 C = 4905.991493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.192 4.192 3 C 0.142 3.858 4 H 0.090 0.910 5 O -0.371 6.371 6 C 0.214 3.786 7 H 0.034 0.966 8 C -0.513 4.513 9 H 0.074 0.926 10 C 0.062 3.938 11 N -0.890 5.890 12 Si 0.910 3.090 13 H -0.269 1.269 14 H -0.281 1.281 15 H -0.281 1.281 16 C -0.032 4.032 17 Cl -0.251 7.251 18 C -0.058 4.058 19 C -0.090 4.090 20 C -0.128 4.128 21 C -0.130 4.130 22 C -0.127 4.127 23 C -0.110 4.110 24 H 0.085 0.915 25 H 0.126 0.874 26 H 0.101 0.899 27 H 0.269 0.731 28 H 0.127 0.873 29 H 0.070 0.930 30 H 0.127 0.873 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.984 -4.795 6.995 10.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.210 4.210 3 C 0.084 3.916 4 H 0.107 0.893 5 O -0.290 6.290 6 C 0.157 3.843 7 H 0.052 0.948 8 C -0.551 4.551 9 H 0.092 0.908 10 C -0.141 4.141 11 N -0.528 5.528 12 Si 0.736 3.264 13 H -0.194 1.194 14 H -0.207 1.207 15 H -0.207 1.207 16 C -0.095 4.095 17 Cl -0.225 7.225 18 C -0.058 4.058 19 C -0.108 4.108 20 C -0.146 4.146 21 C -0.148 4.148 22 C -0.145 4.145 23 C -0.128 4.128 24 H 0.104 0.896 25 H 0.144 0.856 26 H 0.119 0.881 27 H 0.079 0.921 28 H 0.145 0.855 29 H 0.089 0.911 30 H 0.145 0.855 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.997 -4.696 6.951 10.924 hybrid contribution -0.652 0.277 -0.326 0.779 sum 6.345 -4.419 6.625 10.183 Atomic orbital electron populations 1.24096 0.96292 1.02713 0.97694 1.23318 0.96733 0.97775 1.03168 1.20028 0.89289 0.86116 0.96178 0.89281 1.87904 1.60329 1.48246 1.32558 1.20040 0.91198 0.91419 0.81646 0.94791 1.21083 0.96966 1.40419 0.96586 0.90801 1.24989 0.99031 0.95323 0.94764 1.69822 1.37970 1.44817 1.00158 0.86236 0.82960 0.78555 0.78599 1.19369 1.20726 1.20673 1.25890 0.77959 1.00533 1.05117 1.98601 1.38928 1.88381 1.96633 1.19815 0.93438 0.97827 0.94725 1.21069 1.00325 0.97505 0.91893 1.21122 0.93655 1.01046 0.98767 1.21037 0.95716 1.01168 0.96907 1.21004 0.99149 1.01383 0.92977 1.20969 0.92713 1.00346 0.98821 0.89650 0.85595 0.88109 0.92144 0.85495 0.91091 0.85515 0.86535 0.86755 0.86575 0.86455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 13.78 29.01 0.40 -2.75 16 2 C -0.19 -3.45 9.47 -36.03 -0.34 -3.79 16 3 C 0.14 2.74 2.19 -29.04 -0.06 2.68 16 4 H 0.09 1.79 5.08 -51.93 -0.26 1.52 16 5 O -0.37 -8.23 7.75 -35.23 -0.27 -8.50 16 6 C 0.21 5.13 1.43 -27.88 -0.04 5.09 16 7 H 0.03 0.89 7.72 -51.93 -0.40 0.49 16 8 C -0.51 -13.16 8.23 -34.44 -0.28 -13.44 16 9 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 10 C 0.06 1.57 5.29 -17.82 -0.09 1.47 16 11 N -0.89 -23.41 11.29 55.43 0.63 -22.79 16 12 Si 0.91 19.99 29.54 -169.99 -5.02 14.97 16 13 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 16 C -0.03 -0.75 6.17 37.16 0.23 -0.52 16 17 Cl -0.25 -5.17 26.20 -51.86 -1.36 -6.53 16 18 C -0.06 -1.01 4.96 -104.63 -0.52 -1.53 16 19 C -0.09 -1.50 9.35 -39.58 -0.37 -1.87 16 20 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 21 C -0.13 -1.71 10.05 -39.59 -0.40 -2.10 16 22 C -0.13 -1.73 10.05 -39.58 -0.40 -2.12 16 23 C -0.11 -1.72 9.67 -39.58 -0.38 -2.10 16 24 H 0.09 1.34 8.06 -52.49 -0.42 0.92 16 25 H 0.13 2.67 5.69 -52.49 -0.30 2.37 16 26 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 27 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 28 H 0.13 3.17 5.95 -51.93 -0.31 2.86 16 29 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.13 2.20 7.77 -52.49 -0.41 1.79 16 31 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 32 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.12 1.71 8.04 -52.49 -0.42 1.29 16 LS Contribution 301.57 15.07 4.54 4.54 Total: -1.00 -26.11 301.57 -8.32 -34.44 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -4.18 Total: 7.06 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -2.66 Total: -23.20 kcal Atomic # 7 Polarization: -23.41 SS G_CDS: 0.63 Total: -22.79 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.27 Total: -8.50 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 17 Polarization: -5.17 SS G_CDS: -1.36 Total: -6.53 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -26.11 -8.32 -34.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223308532.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.972 kcal (2) G-P(sol) polarization free energy of solvation -26.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds