Wall clock time and date at job start Mon Mar 30 2020 00:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 120.00003 * 2 1 4 4 H 1.08996 * 109.46986 * 121.86380 * 3 2 1 5 5 O 1.42901 * 109.47062 * 1.86127 * 3 2 1 6 6 C 1.42897 * 113.99694 * 103.65157 * 5 3 2 7 7 H 1.09001 * 109.47349 * 324.79336 * 6 5 3 8 8 C 1.50704 * 109.47053 * 84.78816 * 6 5 3 9 9 H 1.07997 * 120.00110 * 359.72401 * 8 6 5 10 10 C 1.37884 * 119.99699 * 180.02562 * 8 6 5 11 11 N 1.31511 * 120.00172 * 359.72489 * 10 8 6 12 12 Si 1.86797 * 119.99655 * 179.72718 * 10 8 6 13 13 H 1.48493 * 109.47336 * 59.99709 * 12 10 8 14 14 H 1.48509 * 109.47061 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47169 * 299.99453 * 12 10 8 16 16 C 1.52998 * 109.47463 * 204.79101 * 6 5 3 17 17 Cl 1.80296 * 109.47210 * 65.17037 * 16 6 5 18 18 C 1.50701 * 109.47084 * 241.86353 * 3 2 1 19 19 C 1.38230 * 120.00043 * 84.72770 * 18 3 2 20 20 C 1.38240 * 120.00176 * 179.80978 * 19 18 3 21 21 C 1.38235 * 119.99527 * 0.39821 * 20 19 18 22 22 C 1.38237 * 120.00147 * 359.85723 * 21 20 19 23 23 C 1.38231 * 119.99901 * 359.95241 * 22 21 20 24 24 H 1.07997 * 120.00081 * 185.30552 * 1 2 3 25 25 H 1.08001 * 119.99561 * 5.30376 * 1 2 3 26 26 H 1.07998 * 119.99614 * 180.02562 * 2 1 3 27 27 H 0.96997 * 120.00168 * 179.97438 * 11 10 8 28 28 H 1.08995 * 109.47353 * 185.17940 * 16 6 5 29 29 H 1.09007 * 109.46623 * 305.17389 * 16 6 5 30 30 H 1.08001 * 120.00440 * 359.97438 * 19 18 3 31 31 H 1.07994 * 120.00168 * 180.22985 * 20 19 18 32 32 H 1.07996 * 119.99619 * 179.83339 * 21 20 19 33 33 H 1.08003 * 119.99691 * 179.97438 * 22 21 20 34 34 H 1.08004 * 119.99766 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 2.7150 1.3485 0.8728 5 8 1.1355 2.3909 0.0438 6 6 1.0280 3.0121 1.3261 7 1 1.1358 2.2578 2.1055 8 6 2.1131 4.0472 1.4755 9 1 2.8174 4.2108 0.6733 10 6 2.2104 4.7810 2.6388 11 7 1.3531 4.5814 3.6159 12 14 3.5601 6.0586 2.8269 13 1 3.4199 7.0869 1.7648 14 1 3.4483 6.7042 4.1596 15 1 4.8855 5.3999 2.7063 16 6 -0.3400 3.6853 1.4537 17 17 -1.6329 2.4289 1.4272 18 6 2.8950 1.4051 -1.2529 19 6 2.3291 1.8781 -2.4220 20 6 3.0928 1.9736 -3.5704 21 6 4.4202 1.5882 -3.5515 22 6 4.9847 1.1103 -2.3837 23 6 4.2220 1.0185 -1.2345 24 1 -0.5400 -0.9313 0.0865 25 1 -0.5399 0.9314 -0.0865 26 1 1.8500 -0.9353 -0.0004 27 1 1.4218 5.0973 4.4344 28 1 -0.3878 4.2362 2.3929 29 1 -0.4852 4.3736 0.6210 30 1 1.2910 2.1756 -2.4377 31 1 2.6516 2.3466 -4.4828 32 1 5.0161 1.6603 -4.4493 33 1 6.0217 0.8088 -2.3692 34 1 4.6630 0.6447 -0.3222 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223308533.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:30 Heat of formation + Delta-G solvation = -18.260186 kcal Electronic energy + Delta-G solvation = -18023.538350 eV Core-core repulsion = 15140.511736 eV Total energy + Delta-G solvation = -2883.026614 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.14285 -37.26084 -34.82845 -33.73717 -32.36079 -30.76484 -30.52030 -28.91111 -25.46175 -25.06169 -22.27609 -21.18742 -20.88057 -18.98653 -16.91165 -16.55854 -15.82617 -15.12008 -15.01059 -14.58420 -14.03400 -13.70988 -13.37836 -13.02900 -12.77980 -12.42078 -12.18751 -11.94923 -11.52045 -11.32336 -11.08623 -11.03905 -10.78861 -10.77543 -10.51696 -10.17455 -9.93681 -9.39392 -9.21227 -8.76542 -8.61470 -8.57108 -8.34503 -8.27303 -6.29435 -4.39026 1.69540 1.76754 2.87855 3.18456 3.24578 3.27724 3.53444 4.13933 4.22937 4.66606 5.05076 5.21190 5.26822 5.34548 5.49423 5.61341 5.83765 5.90512 5.98007 6.16750 6.29922 6.36550 6.41779 6.50389 6.62542 6.77385 6.83554 6.95581 7.08970 7.21818 7.30248 7.35391 7.40032 7.69205 7.95269 8.25375 8.80471 9.30761 10.74794 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.014082 B = 0.008327 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.921274 B = 3361.673395 C = 4816.944347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.185 4.185 3 C 0.164 3.836 4 H 0.081 0.919 5 O -0.377 6.377 6 C 0.213 3.787 7 H 0.031 0.969 8 C -0.538 4.538 9 H 0.069 0.931 10 C 0.064 3.936 11 N -0.890 5.890 12 Si 0.902 3.098 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.274 1.274 16 C -0.005 4.005 17 Cl -0.244 7.244 18 C -0.063 4.063 19 C -0.088 4.088 20 C -0.128 4.128 21 C -0.131 4.131 22 C -0.126 4.126 23 C -0.115 4.115 24 H 0.083 0.917 25 H 0.126 0.874 26 H 0.102 0.898 27 H 0.269 0.731 28 H 0.131 0.869 29 H 0.070 0.930 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.406 -5.777 -8.139 10.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.204 4.204 3 C 0.105 3.895 4 H 0.099 0.901 5 O -0.297 6.297 6 C 0.157 3.843 7 H 0.049 0.951 8 C -0.576 4.576 9 H 0.088 0.912 10 C -0.139 4.139 11 N -0.528 5.528 12 Si 0.729 3.271 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.200 1.200 16 C -0.067 4.067 17 Cl -0.219 7.219 18 C -0.064 4.064 19 C -0.106 4.106 20 C -0.146 4.146 21 C -0.149 4.149 22 C -0.145 4.145 23 C -0.133 4.133 24 H 0.102 0.898 25 H 0.144 0.856 26 H 0.120 0.880 27 H 0.079 0.921 28 H 0.149 0.851 29 H 0.089 0.911 30 H 0.144 0.856 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.153 -5.726 -8.095 10.146 hybrid contribution 0.839 0.616 0.448 1.133 sum 2.992 -5.110 -7.647 9.672 Atomic orbital electron populations 1.24159 0.96370 1.02667 0.97827 1.23246 0.96701 0.97438 1.02987 1.19547 0.89779 0.85691 0.94434 0.90123 1.87741 1.60819 1.46269 1.34838 1.20040 0.91180 0.92399 0.80703 0.95142 1.21639 1.13436 1.21012 1.01560 0.91247 1.25007 0.96403 0.97160 0.95314 1.69778 1.35972 1.41034 1.06024 0.86466 0.81939 0.81261 0.77386 1.19924 1.21027 1.19957 1.25234 0.85311 0.90242 1.05928 1.98613 1.60633 1.63400 1.99233 1.19998 0.93632 0.97420 0.95320 1.21019 1.00472 0.97391 0.91756 1.21117 0.94387 1.00817 0.98234 1.21033 0.95428 1.00617 0.97857 1.20999 0.99378 1.00941 0.93135 1.20989 0.93487 1.00522 0.98293 0.89842 0.85632 0.87964 0.92066 0.85113 0.91108 0.85565 0.86580 0.86798 0.86578 0.86269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 13.94 29.01 0.40 -2.63 16 2 C -0.19 -3.22 9.50 -36.03 -0.34 -3.56 16 3 C 0.16 3.17 2.72 -29.03 -0.08 3.09 16 4 H 0.08 1.66 7.44 -51.93 -0.39 1.27 16 5 O -0.38 -8.23 7.04 -35.23 -0.25 -8.48 16 6 C 0.21 5.11 1.97 -27.88 -0.05 5.05 16 7 H 0.03 0.80 7.79 -51.93 -0.40 0.40 16 8 C -0.54 -13.95 8.70 -34.44 -0.30 -14.25 16 9 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 10 C 0.06 1.65 5.29 -17.82 -0.09 1.56 16 11 N -0.89 -23.55 11.28 55.43 0.63 -22.93 16 12 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 13 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 C 0.00 -0.11 6.17 37.16 0.23 0.12 16 17 Cl -0.24 -5.01 26.57 -51.86 -1.38 -6.39 16 18 C -0.06 -1.13 4.98 -104.63 -0.52 -1.65 16 19 C -0.09 -1.50 9.35 -39.58 -0.37 -1.87 16 20 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 21 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 22 C -0.13 -1.76 10.05 -39.58 -0.40 -2.15 16 23 C -0.11 -1.81 9.68 -39.59 -0.38 -2.19 16 24 H 0.08 1.27 8.06 -52.49 -0.42 0.85 16 25 H 0.13 2.42 4.36 -52.49 -0.23 2.19 16 26 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 27 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.13 3.23 5.94 -51.93 -0.31 2.92 16 29 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 30 H 0.13 2.20 7.64 -52.49 -0.40 1.80 16 31 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 34 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 303.97 15.07 4.58 4.58 Total: -1.00 -26.33 303.97 -8.38 -34.71 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -4.23 Total: 6.12 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -2.70 Total: -22.90 kcal Atomic # 7 Polarization: -23.55 SS G_CDS: 0.63 Total: -22.93 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.25 Total: -8.48 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 17 Polarization: -5.01 SS G_CDS: -1.38 Total: -6.39 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.33 -8.38 -34.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223308533.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.452 kcal (2) G-P(sol) polarization free energy of solvation -26.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds