Wall clock time and date at job start Mon Mar 30 2020 01:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30753 * 1 3 3 Si 1.86795 * 120.00042 * 2 1 4 4 H 1.48504 * 109.46763 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47302 * 300.00059 * 3 2 1 6 6 H 1.48500 * 109.46900 * 60.00411 * 3 2 1 7 7 C 1.40070 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00026 * 180.02562 * 7 2 1 9 9 C 1.40649 * 119.99795 * 359.97438 * 7 2 1 10 10 N 1.34120 * 120.59145 * 11.21308 * 9 7 2 11 11 C 1.31507 * 119.86275 * 179.97438 * 10 9 7 12 12 C 1.39057 * 121.15196 * 0.02562 * 11 10 9 13 13 N 1.31848 * 121.23230 * 0.02562 * 12 11 10 14 14 C 1.33104 * 120.03793 * 359.68775 * 13 12 11 15 15 C 1.47476 * 120.55728 * 180.30860 * 14 13 12 16 16 C 1.40995 * 119.41563 * 224.03900 * 15 14 13 17 17 C 1.35192 * 121.65697 * 179.97438 * 16 15 14 18 18 C 1.41430 * 119.96694 * 0.02562 * 17 16 15 19 19 N 1.31915 * 134.35229 * 179.97438 * 18 17 16 20 20 N 1.39918 * 109.09473 * 180.02562 * 19 18 17 21 21 H 0.96993 * 124.99889 * 180.02562 * 20 19 18 22 22 C 1.33944 * 110.00363 * 0.02562 * 20 19 18 23 23 C 1.38629 * 107.79752 * 359.97438 * 22 20 19 24 24 C 1.38552 * 119.41375 * 43.76662 * 15 14 13 25 25 H 0.96999 * 119.99530 * 0.02562 * 1 2 3 26 26 H 1.07999 * 119.41943 * 180.02562 * 11 10 9 27 27 H 1.07993 * 119.37840 * 179.97438 * 12 11 10 28 28 H 1.08004 * 119.16990 * 359.97234 * 16 15 14 29 29 H 1.07996 * 120.01626 * 180.02562 * 17 16 15 30 30 H 1.08007 * 126.10037 * 180.02562 * 22 20 19 31 31 H 1.07998 * 120.33594 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3462 -0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8828 2.3963 1.2126 7 6 2.0078 -1.2131 -0.0005 8 1 3.0878 -1.2131 -0.0001 9 6 1.3045 -2.4311 -0.0005 10 7 -0.0176 -2.4558 -0.2245 11 6 -0.6609 -3.6028 -0.2218 12 6 0.0056 -4.8008 0.0108 13 7 1.3043 -4.8279 0.2370 14 6 2.0039 -3.6955 0.2395 15 6 3.4581 -3.7132 0.4844 16 6 4.0257 -2.7583 1.3527 17 6 5.3527 -2.7333 1.6098 18 6 6.2083 -3.6808 1.0011 19 7 7.5059 -3.9139 1.0450 20 7 7.8032 -5.0048 0.2208 21 1 8.6900 -5.3729 0.0835 22 6 6.6830 -5.4661 -0.3505 23 6 5.6282 -4.6826 0.0916 24 6 4.2414 -4.6714 -0.1384 25 1 -0.4849 0.8401 -0.0004 26 1 -1.7255 -3.6144 -0.4034 27 1 -0.5510 -5.7262 0.0070 28 1 3.3843 -2.0284 1.8242 29 1 5.7593 -1.9903 2.2798 30 1 6.6137 -6.3001 -1.0332 31 1 3.7919 -5.3990 -0.7979 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240209019.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:41 Heat of formation + Delta-G solvation = 110.995722 kcal Electronic energy + Delta-G solvation = -18749.730382 eV Core-core repulsion = 15803.493982 eV Total energy + Delta-G solvation = -2946.236400 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.05014 -40.55456 -37.93453 -35.97872 -34.09213 -33.06954 -32.28598 -31.13769 -29.43026 -27.77425 -25.59393 -23.90652 -23.70740 -21.93658 -21.45124 -19.55643 -18.92805 -17.84710 -17.72103 -17.07083 -16.72063 -15.90763 -15.73513 -15.22879 -15.02483 -14.63601 -14.47275 -14.18782 -13.82954 -13.25816 -13.13535 -12.99275 -12.73605 -12.37045 -12.20633 -11.90260 -11.63139 -11.47007 -11.24587 -11.18810 -10.94028 -9.78490 -9.46815 -9.27438 -8.50245 -8.24225 -6.57149 -0.26764 0.45071 0.92379 1.30964 1.41016 1.53699 1.57272 1.61659 1.95906 2.18030 2.76214 2.99277 3.40438 3.78651 3.83325 3.89573 4.23394 4.31769 4.38812 4.49227 4.61126 4.65446 4.76720 4.80950 5.05746 5.11840 5.17596 5.38222 5.55031 5.61756 5.85323 5.95983 6.01819 6.17220 6.38919 6.50418 6.69245 6.76047 7.38578 7.95315 8.26325 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.017687 B = 0.007177 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.698192 B = 3900.183985 C = 5265.609355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.024 3.976 3 Si 0.982 3.018 4 H -0.248 1.248 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.414 4.414 8 H 0.107 0.893 9 C 0.191 3.809 10 N -0.498 5.498 11 C 0.074 3.926 12 C -0.130 4.130 13 N -0.429 5.429 14 C -0.028 4.028 15 C -0.048 4.048 16 C -0.049 4.049 17 C -0.129 4.129 18 C 0.088 3.912 19 N -0.346 5.346 20 N -0.411 5.411 21 H 0.461 0.539 22 C 0.113 3.887 23 C -0.231 4.231 24 C -0.034 4.034 25 H 0.288 0.712 26 H 0.154 0.846 27 H 0.156 0.844 28 H 0.125 0.875 29 H 0.140 0.860 30 H 0.239 0.761 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.154 -5.187 -1.390 12.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.200 4.200 3 Si 0.801 3.199 4 H -0.171 1.171 5 H -0.189 1.189 6 H -0.185 1.185 7 C -0.445 4.445 8 H 0.124 0.876 9 C 0.065 3.935 10 N -0.215 5.215 11 C -0.094 4.094 12 C -0.289 4.289 13 N -0.141 5.141 14 C -0.178 4.178 15 C -0.051 4.051 16 C -0.072 4.072 17 C -0.150 4.150 18 C -0.064 4.064 19 N -0.176 5.176 20 N -0.113 5.113 21 H 0.309 0.691 22 C -0.046 4.046 23 C -0.240 4.240 24 C -0.056 4.056 25 H 0.099 0.901 26 H 0.171 0.829 27 H 0.174 0.826 28 H 0.143 0.857 29 H 0.157 0.843 30 H 0.255 0.745 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.030 -4.667 -0.861 12.933 hybrid contribution -0.825 0.155 -0.393 0.927 sum 11.205 -4.512 -1.254 12.144 Atomic orbital electron populations 1.70140 1.09138 1.30198 1.26797 1.27121 0.95700 1.04814 0.92376 0.85130 0.79877 0.75615 0.79245 1.17139 1.18909 1.18461 1.20080 0.95714 0.89385 1.39278 0.87565 1.20845 0.89204 0.93237 0.90260 1.69477 1.08358 1.25862 1.17792 1.23832 1.01052 0.90083 0.94451 1.22870 0.91545 0.98839 1.15664 1.67836 1.08259 1.29678 1.08362 1.21657 0.93957 0.89760 1.12393 1.17954 0.89803 0.97594 0.99749 1.20825 0.94648 0.96531 0.95234 1.19801 0.91369 1.00018 1.03788 1.21125 0.91217 0.96804 0.97272 1.77446 1.13867 1.07167 1.19115 1.46239 1.10500 1.22676 1.31875 0.69112 1.23419 0.84537 0.99025 0.97596 1.19822 0.94773 1.02181 1.07237 1.20572 0.90409 0.96784 0.97792 0.90150 0.82883 0.82643 0.85740 0.84265 0.74530 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.10 11.57 21.85 0.25 -37.85 16 2 C 0.02 1.17 5.49 85.30 0.47 1.63 16 3 Si 0.98 36.04 29.56 68.60 2.03 38.07 16 4 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 5 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 6 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 7 C -0.41 -21.34 7.49 23.30 0.17 -21.16 16 8 H 0.11 5.17 5.55 -2.91 -0.02 5.16 16 9 C 0.19 10.42 6.63 41.53 0.28 10.69 16 10 N -0.50 -27.47 8.17 -184.14 -1.50 -28.97 16 11 C 0.07 3.55 11.17 84.94 0.95 4.50 16 12 C -0.13 -5.99 11.17 84.89 0.95 -5.04 16 13 N -0.43 -21.23 10.30 -178.83 -1.84 -23.07 16 14 C -0.03 -1.45 6.51 43.54 0.28 -1.16 16 15 C -0.05 -2.14 5.35 -20.09 -0.11 -2.24 16 16 C -0.05 -2.04 7.46 22.24 0.17 -1.88 16 17 C -0.13 -4.70 10.05 22.35 0.22 -4.48 16 18 C 0.09 3.10 7.49 42.28 0.32 3.42 16 19 N -0.35 -10.65 12.68 -48.54 -0.62 -11.27 16 20 N -0.41 -8.22 7.18 -56.12 -0.40 -8.62 16 21 H 0.46 4.70 8.96 -213.45 -1.91 2.79 16 22 C 0.11 2.31 12.10 84.46 1.02 3.33 16 23 C -0.23 -7.44 6.32 -20.26 -0.13 -7.57 16 24 C -0.03 -1.28 9.71 22.92 0.22 -1.06 16 25 H 0.29 13.17 8.29 -92.71 -0.77 12.40 16 26 H 0.15 6.22 8.06 -2.91 -0.02 6.20 16 27 H 0.16 5.95 8.06 -2.91 -0.02 5.93 16 28 H 0.12 5.33 6.69 -2.91 -0.02 5.31 16 29 H 0.14 4.43 8.06 -2.91 -0.02 4.40 16 30 H 0.24 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -71.19 277.50 2.02 -69.17 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -0.71 Total: 23.56 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 4.81 Total: -21.02 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -4.11 Total: -109.78 kcal Atomic # 14 Polarization: 36.04 SS G_CDS: 2.03 Total: 38.07 kcal Total: -71.19 2.02 -69.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240209019.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.167 kcal (2) G-P(sol) polarization free energy of solvation -71.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds