Wall clock time and date at job start Mon Mar 30 2020 01:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30726 * 1 3 3 Si 1.86800 * 120.00380 * 2 1 4 4 H 1.48493 * 109.47400 * 240.00243 * 3 2 1 5 5 H 1.48505 * 109.46930 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47557 * 119.99734 * 3 2 1 7 7 C 1.40048 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00175 * 197.29988 * 7 2 1 9 9 C 1.41528 * 119.99685 * 17.29109 * 7 2 1 10 10 C 1.41155 * 120.98811 * 23.17600 * 9 7 2 11 11 C 1.37709 * 119.08142 * 180.02562 * 10 9 7 12 12 N 1.31946 * 121.15914 * 359.74078 * 11 10 9 13 13 C 1.32799 * 122.20066 * 0.52934 * 12 11 10 14 14 C 1.48349 * 119.61676 * 179.74572 * 13 12 11 15 15 C 1.41263 * 120.02525 * 184.72509 * 14 13 12 16 16 C 1.35924 * 119.51569 * 179.97438 * 15 14 13 17 17 C 1.40784 * 119.43405 * 0.02562 * 16 15 14 18 18 N 1.32827 * 132.70866 * 179.97438 * 17 16 15 19 19 C 1.32535 * 109.69615 * 180.02562 * 18 17 16 20 20 N 1.31225 * 109.64221 * 0.23749 * 19 18 17 21 21 N 1.36662 * 119.90524 * 0.02562 * 17 16 15 22 22 C 1.35752 * 120.74704 * 359.97438 * 21 17 16 23 23 C 1.38931 * 120.76924 * 359.47310 * 13 12 11 24 24 H 0.97006 * 120.00372 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.45709 * 359.97438 * 10 9 7 26 26 H 1.07995 * 119.41763 * 179.97438 * 11 10 9 27 27 H 1.07998 * 120.24116 * 0.02562 * 15 14 13 28 28 H 1.08001 * 120.28707 * 179.97438 * 16 15 14 29 29 H 1.08004 * 125.17902 * 179.97438 * 19 18 17 30 30 H 1.08002 * 119.78049 * 179.97438 * 22 21 17 31 31 H 1.07990 * 120.62529 * 180.27427 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6964 -1.2124 5 1 1.2764 2.7465 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0075 -1.2128 0.0005 8 1 3.0509 -1.2339 0.2787 9 6 1.3478 -2.4109 -0.3632 10 6 0.1900 -2.3869 -1.1703 11 6 -0.4209 -3.5762 -1.5002 12 7 0.0604 -4.7305 -1.0796 13 6 1.1429 -4.8093 -0.3143 14 6 1.6310 -6.1376 0.1307 15 6 2.7207 -6.2269 1.0251 16 6 3.1592 -7.4493 1.4265 17 6 2.5197 -8.6067 0.9432 18 7 2.7223 -9.9024 1.1536 19 6 1.8437 -10.6106 0.4585 20 7 1.0610 -9.8023 -0.2167 21 7 1.4681 -8.4931 0.0778 22 6 1.0288 -7.2731 -0.3243 23 6 1.8268 -3.6626 0.0697 24 1 -0.4851 0.8401 0.0004 25 1 -0.2116 -1.4486 -1.5236 26 1 -1.3072 -3.5640 -2.1171 27 1 3.2015 -5.3305 1.3880 28 1 3.9916 -7.5321 2.1096 29 1 1.7840 -11.6889 0.4461 30 1 0.1966 -7.2015 -1.0090 31 1 2.7093 -3.7296 0.6884 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240357424.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:53 Heat of formation + Delta-G solvation = 127.948952 kcal Electronic energy + Delta-G solvation = -18277.343318 eV Core-core repulsion = 15331.842065 eV Total energy + Delta-G solvation = -2945.501253 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.69013 -40.49514 -38.66662 -36.02931 -34.66488 -33.19824 -32.68931 -31.18304 -29.75625 -27.94944 -25.31776 -24.94961 -23.15459 -22.94489 -22.59161 -19.57159 -18.64677 -18.13238 -17.53755 -17.22635 -16.63856 -16.24057 -15.97815 -15.80479 -15.40879 -14.83614 -14.58292 -14.29983 -13.95859 -13.53641 -13.29652 -13.05740 -12.92481 -12.72792 -12.38416 -12.25377 -11.98826 -11.78233 -11.26664 -11.23275 -10.85764 -10.02666 -9.97088 -9.70871 -8.90270 -8.70914 -6.56971 -0.47781 -0.22531 0.87905 0.97003 1.02198 1.42463 1.52876 1.56468 1.77166 2.18842 2.36820 2.80439 2.96290 3.18467 3.38455 3.72589 3.77220 3.89441 4.18249 4.30592 4.35644 4.69863 4.82101 4.92525 4.99356 5.14995 5.20224 5.21974 5.27967 5.38291 5.40607 5.48844 5.69120 5.90709 6.13726 6.49383 6.77240 6.79500 6.86558 7.59267 8.22345 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.043082 B = 0.004137 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.774349 B = 6767.268458 C = 7339.519943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.040 3.960 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.480 4.480 8 H 0.091 0.909 9 C 0.099 3.901 10 C -0.231 4.231 11 C 0.089 3.911 12 N -0.580 5.580 13 C 0.158 3.842 14 C -0.056 4.056 15 C -0.036 4.036 16 C -0.103 4.103 17 C 0.262 3.738 18 N -0.570 5.570 19 C 0.235 3.765 20 N -0.379 5.379 21 N -0.293 5.293 22 C 0.124 3.876 23 C -0.257 4.257 24 H 0.293 0.707 25 H 0.116 0.884 26 H 0.147 0.853 27 H 0.179 0.821 28 H 0.193 0.807 29 H 0.266 0.734 30 H 0.173 0.827 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.015 -6.723 2.084 8.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.178 4.178 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.511 4.511 8 H 0.109 0.891 9 C 0.091 3.909 10 C -0.254 4.254 11 C -0.063 4.063 12 N -0.295 5.295 13 C 0.024 3.976 14 C -0.062 4.062 15 C -0.062 4.062 16 C -0.124 4.124 17 C 0.010 3.990 18 N -0.301 5.301 19 C -0.064 4.064 20 N -0.210 5.210 21 N -0.066 5.066 22 C -0.006 4.006 23 C -0.280 4.280 24 H 0.104 0.896 25 H 0.134 0.866 26 H 0.164 0.836 27 H 0.196 0.804 28 H 0.210 0.790 29 H 0.281 0.719 30 H 0.190 0.810 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.004 -7.952 1.575 9.041 hybrid contribution 0.148 1.750 -0.008 1.757 sum 4.152 -6.202 1.567 7.626 Atomic orbital electron populations 1.69792 1.09239 1.31301 1.33268 1.26835 0.95437 1.04776 0.90764 0.85191 0.78764 0.75214 0.80300 1.18420 1.19476 1.17961 1.19938 0.98704 0.91597 1.40833 0.89071 1.18147 0.91297 0.93270 0.88147 1.22297 1.01055 0.98407 1.03604 1.22258 0.98502 0.87833 0.97699 1.67301 1.15118 1.29351 1.17775 1.19007 0.92650 0.90458 0.95530 1.18282 0.97750 0.90269 0.99874 1.21637 0.92706 0.99392 0.92431 1.20560 1.02484 0.86254 1.03080 1.22451 0.89328 0.95102 0.92110 1.70901 1.29391 0.99453 1.30333 1.26980 0.87513 1.02813 0.89121 1.78468 1.27817 0.84563 1.30158 1.47640 1.22739 1.06228 1.29958 1.21544 0.99955 0.79547 0.99505 1.22024 1.05242 0.91961 1.08762 0.89586 0.86573 0.83593 0.80423 0.78993 0.71899 0.81018 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.50 10.90 21.84 0.24 -38.26 16 2 C 0.04 1.80 5.20 85.30 0.44 2.24 16 3 Si 0.98 33.97 29.59 68.60 2.03 36.00 16 4 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 5 H -0.27 -8.96 7.11 99.48 0.71 -8.25 16 6 H -0.26 -8.47 7.11 99.48 0.71 -7.76 16 7 C -0.48 -22.94 9.12 23.52 0.21 -22.73 16 8 H 0.09 4.06 7.90 -2.91 -0.02 4.03 16 9 C 0.10 4.84 5.61 -21.12 -0.12 4.72 16 10 C -0.23 -11.24 8.80 22.86 0.20 -11.04 16 11 C 0.09 3.97 11.15 84.55 0.94 4.91 16 12 N -0.58 -25.56 9.35 -185.36 -1.73 -27.29 16 13 C 0.16 6.53 6.72 41.86 0.28 6.81 16 14 C -0.06 -1.92 5.84 -20.28 -0.12 -2.04 16 15 C -0.04 -0.95 9.40 22.48 0.21 -0.74 16 16 C -0.10 -2.53 10.09 22.35 0.23 -2.30 16 17 C 0.26 8.05 7.88 134.12 1.06 9.11 16 18 N -0.57 -16.99 11.25 -198.07 -2.23 -19.22 16 19 C 0.24 6.21 12.98 180.83 2.35 8.56 16 20 N -0.38 -12.24 12.78 -61.37 -0.78 -13.02 16 21 N -0.29 -9.85 3.89 -192.12 -0.75 -10.59 16 22 C 0.12 4.26 10.74 83.64 0.90 5.16 16 23 C -0.26 -11.04 9.25 23.07 0.21 -10.83 16 24 H 0.29 12.57 8.29 -92.70 -0.77 11.80 16 25 H 0.12 5.83 6.16 -2.91 -0.02 5.82 16 26 H 0.15 5.66 8.06 -2.91 -0.02 5.64 16 27 H 0.18 3.91 6.25 -2.91 -0.02 3.90 16 28 H 0.19 3.27 8.06 -2.91 -0.02 3.25 16 29 H 0.27 4.00 8.06 -2.91 -0.02 3.98 16 30 H 0.17 6.13 7.45 -2.91 -0.02 6.10 16 31 H 0.13 4.83 6.22 -2.92 -0.02 4.81 16 Total: -1.00 -60.14 278.29 4.76 -55.38 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 1.18 Total: 25.18 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 6.80 Total: -8.17 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -5.25 Total: -108.39 kcal Atomic # 14 Polarization: 33.97 SS G_CDS: 2.03 Total: 36.00 kcal Total: -60.14 4.76 -55.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240357424.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.330 kcal (2) G-P(sol) polarization free energy of solvation -60.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds