Wall clock time and date at job start Mon Mar 30 2020 01:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30714 * 1 3 3 Si 1.86802 * 119.99496 * 2 1 4 4 H 1.48496 * 109.47014 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47215 * 299.99691 * 3 2 1 6 6 H 1.48504 * 109.47121 * 59.99818 * 3 2 1 7 7 C 1.40124 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00041 * 164.28096 * 7 2 1 9 9 C 1.40878 * 120.00255 * 344.27697 * 7 2 1 10 10 C 1.41145 * 121.10771 * 334.64314 * 9 7 2 11 11 C 1.36442 * 119.10679 * 179.97438 * 10 9 7 12 12 N 1.32231 * 121.52646 * 359.97438 * 11 10 9 13 13 C 1.31652 * 122.51183 * 0.02562 * 12 11 10 14 14 C 1.39364 * 120.64696 * 0.02562 * 13 12 11 15 15 C 1.47797 * 120.78310 * 180.02562 * 14 13 12 16 16 C 1.41486 * 120.12607 * 129.70085 * 15 14 13 17 17 C 1.35797 * 119.50056 * 179.73105 * 16 15 14 18 18 C 1.40876 * 119.63010 * 0.54463 * 17 16 15 19 19 N 1.32818 * 132.57427 * 179.72797 * 18 17 16 20 20 C 1.32575 * 109.70836 * 179.97438 * 19 18 17 21 21 N 1.31203 * 109.63704 * 0.02562 * 20 19 18 22 22 N 1.36661 * 120.06605 * 359.72865 * 18 17 16 23 23 C 1.35689 * 120.78492 * 359.97438 * 22 18 17 24 24 H 0.97001 * 120.00178 * 0.02562 * 1 2 3 25 25 H 1.07992 * 120.44334 * 359.97438 * 10 9 7 26 26 H 1.07999 * 119.23101 * 180.02562 * 11 10 9 27 27 H 1.07998 * 119.67571 * 179.97438 * 13 12 11 28 28 H 1.08002 * 120.24660 * 359.97438 * 16 15 14 29 29 H 1.08005 * 120.18316 * 180.27174 * 17 16 15 30 30 H 1.07992 * 125.18266 * 179.97438 * 20 19 18 31 31 H 1.08007 * 119.86204 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 3.7010 1.3466 0.0006 5 1 1.8823 2.3965 -1.2125 6 1 1.8821 2.3965 1.2125 7 6 2.0078 -1.2135 -0.0005 8 1 3.0575 -1.2308 -0.2539 9 6 1.3431 -2.4109 0.3295 10 6 0.1923 -2.4047 1.1468 11 6 -0.4196 -3.5884 1.4404 12 7 0.0403 -4.7382 0.9768 13 6 1.1077 -4.8158 0.2101 14 6 1.8091 -3.6665 -0.1497 15 6 3.0074 -3.7501 -1.0108 16 6 3.1210 -2.9217 -2.1521 17 6 4.2301 -3.0052 -2.9313 18 6 5.2466 -3.9225 -2.6000 19 7 6.4105 -4.2178 -3.1677 20 6 7.0207 -5.1655 -2.4697 21 7 6.2769 -5.5057 -1.4438 22 7 5.1173 -4.7188 -1.4969 23 6 4.0161 -4.6393 -0.7081 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1985 -1.4756 1.5345 26 1 -1.3005 -3.5859 2.0652 27 1 1.4436 -5.7797 -0.1428 28 1 2.3333 -2.2254 -2.3995 29 1 4.3302 -2.3749 -3.8026 30 1 7.9830 -5.5929 -2.7096 31 1 3.9296 -5.2755 0.1604 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240358638.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:01 Heat of formation + Delta-G solvation = 125.964066 kcal Electronic energy + Delta-G solvation = -18857.210869 eV Core-core repulsion = 15911.623545 eV Total energy + Delta-G solvation = -2945.587324 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.54849 -40.45894 -38.52656 -36.10640 -34.51927 -33.59612 -32.10910 -31.18877 -29.74878 -27.84967 -25.32132 -24.46597 -23.37820 -22.93252 -22.37603 -19.51782 -18.68983 -18.05017 -17.45457 -17.09425 -16.91847 -16.30920 -16.07490 -15.80797 -15.14029 -14.74751 -14.43241 -14.17431 -13.81105 -13.59819 -13.24453 -13.21598 -12.97242 -12.72975 -12.30239 -12.13362 -12.00335 -11.79161 -11.30295 -11.15496 -10.62529 -9.98073 -9.86656 -9.59823 -8.99160 -8.72090 -6.58936 -0.28581 -0.06985 0.81017 0.97260 1.18939 1.41664 1.52850 1.54897 1.79143 2.15217 2.47583 2.72664 3.06790 3.28223 3.64841 3.78174 3.92530 4.03603 4.14921 4.37738 4.41574 4.56594 4.88597 4.93565 5.01325 5.13479 5.26410 5.29547 5.40967 5.42226 5.50205 5.53735 5.80226 5.88529 6.12671 6.46594 6.73250 6.75075 6.96691 7.69833 8.15173 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.017534 B = 0.007251 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.517438 B = 3860.481091 C = 5157.406783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.049 3.951 3 Si 0.971 3.029 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.266 1.266 7 C -0.453 4.453 8 H 0.086 0.914 9 C 0.125 3.875 10 C -0.224 4.224 11 C 0.081 3.919 12 N -0.590 5.590 13 C 0.131 3.869 14 C -0.238 4.238 15 C -0.006 4.006 16 C -0.028 4.028 17 C -0.116 4.116 18 C 0.258 3.742 19 N -0.577 5.577 20 C 0.230 3.770 21 N -0.381 5.381 22 N -0.283 5.283 23 C 0.075 3.925 24 H 0.296 0.704 25 H 0.118 0.882 26 H 0.141 0.859 27 H 0.147 0.853 28 H 0.155 0.845 29 H 0.178 0.822 30 H 0.263 0.737 31 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.512 -0.344 -3.352 6.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.171 4.171 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.185 1.185 6 H -0.191 1.191 7 C -0.483 4.483 8 H 0.104 0.896 9 C 0.118 3.882 10 C -0.246 4.246 11 C -0.066 4.066 12 N -0.305 5.305 13 C -0.027 4.027 14 C -0.244 4.244 15 C -0.011 4.011 16 C -0.053 4.053 17 C -0.137 4.137 18 C 0.006 3.994 19 N -0.309 5.309 20 C -0.070 4.070 21 N -0.213 5.213 22 N -0.055 5.055 23 C -0.053 4.053 24 H 0.108 0.892 25 H 0.135 0.865 26 H 0.158 0.842 27 H 0.165 0.835 28 H 0.173 0.827 29 H 0.195 0.805 30 H 0.278 0.722 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.303 -1.423 -2.918 6.218 hybrid contribution 0.295 1.532 0.052 1.561 sum 5.598 0.109 -2.866 6.290 Atomic orbital electron populations 1.69765 1.08965 1.31490 1.31745 1.26693 0.95306 1.04207 0.90945 0.85284 0.79557 0.76650 0.79288 1.18403 1.18523 1.19084 1.19768 0.97734 0.91059 1.39706 0.89551 1.18010 0.90624 0.92074 0.87532 1.21919 1.00775 0.98421 1.03504 1.22066 0.98525 0.88435 0.97560 1.67414 1.16565 1.29104 1.17391 1.22549 0.90732 0.96695 0.92757 1.19248 1.00934 0.94953 1.09273 1.18406 0.92854 0.94672 0.95212 1.21591 0.97033 0.95655 0.91056 1.20417 0.90668 0.99092 1.03530 1.22203 0.95425 0.94884 0.86885 1.70865 1.06254 1.21379 1.32403 1.26878 1.00778 0.91719 0.87606 1.78395 0.95154 1.20640 1.27149 1.47522 1.13918 1.25162 1.18928 1.22024 0.83849 1.02536 0.96895 0.89223 0.86454 0.84196 0.83540 0.82735 0.80465 0.72195 0.80770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -35.05 10.95 21.86 0.24 -34.81 16 2 C 0.05 2.06 5.21 85.32 0.44 2.50 16 3 Si 0.97 32.70 29.59 68.60 2.03 34.73 16 4 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 5 H -0.26 -8.39 7.11 99.48 0.71 -7.69 16 6 H -0.27 -8.83 7.11 99.48 0.71 -8.12 16 7 C -0.45 -20.14 7.32 23.37 0.17 -19.97 16 8 H 0.09 3.76 6.71 -2.91 -0.02 3.74 16 9 C 0.13 5.76 5.59 -20.92 -0.12 5.64 16 10 C -0.22 -10.36 8.72 22.56 0.20 -10.17 16 11 C 0.08 3.53 11.08 84.21 0.93 4.46 16 12 N -0.59 -25.82 10.32 -196.19 -2.02 -27.84 16 13 C 0.13 5.34 10.69 84.99 0.91 6.25 16 14 C -0.24 -9.86 5.54 -19.48 -0.11 -9.97 16 15 C -0.01 -0.23 4.98 -20.05 -0.10 -0.33 16 16 C -0.03 -0.93 8.09 22.50 0.18 -0.75 16 17 C -0.12 -3.55 10.08 22.35 0.23 -3.32 16 18 C 0.26 8.89 7.87 134.15 1.06 9.94 16 19 N -0.58 -19.21 11.25 -198.00 -2.23 -21.44 16 20 C 0.23 6.63 12.98 180.82 2.35 8.97 16 21 N -0.38 -12.88 12.78 -61.37 -0.78 -13.66 16 22 N -0.28 -10.02 3.88 -190.97 -0.74 -10.77 16 23 C 0.08 2.59 10.74 84.00 0.90 3.49 16 24 H 0.30 11.72 8.29 -92.71 -0.77 10.96 16 25 H 0.12 5.57 6.27 -2.91 -0.02 5.56 16 26 H 0.14 5.33 8.06 -2.91 -0.02 5.31 16 27 H 0.15 5.11 8.05 -2.91 -0.02 5.08 16 28 H 0.16 5.20 7.42 -2.91 -0.02 5.18 16 29 H 0.18 4.34 8.06 -2.91 -0.02 4.32 16 30 H 0.26 4.58 8.06 -2.91 -0.02 4.56 16 31 H 0.18 5.52 8.03 -2.91 -0.02 5.50 16 Total: -1.00 -55.52 277.91 4.71 -50.81 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 1.18 Total: 26.22 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 7.04 Total: -3.24 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -5.54 Total: -108.52 kcal Atomic # 14 Polarization: 32.70 SS G_CDS: 2.03 Total: 34.73 kcal Total: -55.52 4.71 -50.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240358638.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.770 kcal (2) G-P(sol) polarization free energy of solvation -55.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds