Wall clock time and date at job start Mon Mar 30 2020 01:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86802 * 120.00419 * 2 1 4 4 H 1.48504 * 109.46986 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47082 * 120.00081 * 3 2 1 6 6 H 1.48497 * 109.47726 * 240.00633 * 3 2 1 7 7 C 1.40026 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00367 * 173.67053 * 7 2 1 9 9 C 1.41303 * 119.99734 * 353.65876 * 7 2 1 10 10 C 1.40875 * 120.14547 * 186.22383 * 9 7 2 11 11 N 1.31869 * 119.97702 * 179.97438 * 10 9 7 12 12 C 1.32192 * 120.28828 * 0.02562 * 11 10 9 13 13 C 1.40057 * 120.29615 * 359.97425 * 12 11 10 14 14 C 1.48183 * 119.98927 * 180.02562 * 13 12 11 15 15 C 1.40776 * 119.31799 * 179.97438 * 14 13 12 16 16 C 1.35332 * 121.60411 * 180.02562 * 15 14 13 17 17 C 1.41275 * 119.84888 * 359.97438 * 16 15 14 18 18 C 1.38173 * 134.53070 * 180.02562 * 17 16 15 19 19 N 1.34064 * 107.94943 * 180.02562 * 18 17 16 20 20 H 0.96999 * 125.02336 * 179.97438 * 19 18 17 21 21 N 1.39950 * 109.95178 * 0.02562 * 19 18 17 22 22 C 1.32179 * 108.91609 * 0.02562 * 21 19 18 23 23 C 1.37875 * 119.31699 * 359.73268 * 14 13 12 24 24 N 1.32605 * 120.01711 * 359.78672 * 13 12 11 25 25 H 0.96999 * 119.99469 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.01201 * 359.96507 * 10 9 7 27 27 H 1.08009 * 119.85161 * 179.97438 * 12 11 10 28 28 H 1.08005 * 119.19888 * 359.97438 * 15 14 13 29 29 H 1.07991 * 120.07266 * 180.02562 * 16 15 14 30 30 H 1.07998 * 126.02506 * 359.96355 * 18 17 16 31 31 H 1.08000 * 120.29624 * 359.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2766 2.7465 0.0006 5 1 3.0953 1.6963 1.2125 6 1 3.0952 1.6965 -1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0826 -1.2156 -0.1037 9 6 1.3074 -2.4327 0.1341 10 6 2.0151 -3.6437 0.2656 11 7 1.3584 -4.7802 0.3915 12 6 0.0365 -4.7896 0.3945 13 6 -0.6789 -3.5926 0.2646 14 6 -2.1606 -3.6110 0.2694 15 6 -2.8654 -2.3994 0.1383 16 6 -4.2183 -2.3625 0.1374 17 6 -4.9545 -3.5610 0.2697 18 6 -6.3001 -3.8725 0.3063 19 7 -6.4129 -5.2004 0.4522 20 1 -7.2513 -5.6852 0.5072 21 7 -5.1423 -5.7837 0.5145 22 6 -4.2292 -4.8337 0.4096 23 6 -2.8204 -4.8148 0.3971 24 7 -0.0306 -2.4423 0.1420 25 1 -0.4849 0.8401 0.0004 26 1 3.0951 -3.6412 0.2631 27 1 -0.4943 -5.7247 0.4977 28 1 -2.3131 -1.4769 0.0369 29 1 -4.7338 -1.4191 0.0349 30 1 -7.1170 -3.1700 0.2317 31 1 -2.2623 -5.7346 0.4921 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240553486.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:28 Heat of formation + Delta-G solvation = 134.149833 kcal Electronic energy + Delta-G solvation = -18508.248406 eV Core-core repulsion = 15563.016044 eV Total energy + Delta-G solvation = -2945.232363 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.93149 -39.05134 -36.66874 -34.09077 -32.36505 -31.89980 -31.08041 -29.05142 -28.44020 -25.97204 -24.36971 -22.74744 -21.68394 -20.63343 -20.13974 -18.03849 -17.37668 -16.58010 -15.88036 -15.34249 -14.93735 -14.92089 -14.64939 -13.73278 -13.64022 -13.23078 -13.12570 -12.74451 -11.75723 -11.57017 -11.52051 -11.32313 -11.27843 -11.23222 -10.75901 -10.37703 -10.03746 -9.97583 -9.86605 -9.56193 -9.36757 -8.45301 -7.57624 -7.48844 -7.16905 -6.57443 -4.73099 0.80453 1.89820 2.63950 2.77111 2.85334 3.00469 3.02160 3.05674 3.16490 3.81860 4.31068 4.53602 4.68982 4.77729 5.28952 5.39299 5.56041 5.74927 5.75885 5.84745 6.06036 6.13167 6.31569 6.38671 6.57901 6.76739 6.81882 6.94322 7.02829 7.13507 7.22891 7.33293 7.40374 7.60627 7.83369 7.99752 8.36494 8.60831 9.18608 9.75267 10.08703 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.025456 B = 0.005387 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.692682 B = 5196.372447 C = 6283.413948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.068 3.932 3 Si 0.914 3.086 4 H -0.276 1.276 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.413 4.413 8 H 0.091 0.909 9 C 0.207 3.793 10 C -0.057 4.057 11 N -0.431 5.431 12 C -0.101 4.101 13 C 0.129 3.871 14 C 0.037 3.963 15 C -0.102 4.102 16 C -0.075 4.075 17 C -0.196 4.196 18 C 0.064 3.936 19 N -0.435 5.435 20 H 0.438 0.562 21 N -0.315 5.315 22 C 0.109 3.891 23 C -0.110 4.110 24 N -0.438 5.438 25 H 0.278 0.722 26 H 0.135 0.865 27 H 0.131 0.869 28 H 0.154 0.846 29 H 0.120 0.880 30 H 0.182 0.818 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.202 -0.237 0.104 11.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.332 5.332 2 C -0.158 4.158 3 Si 0.737 3.263 4 H -0.201 1.201 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.445 4.445 8 H 0.109 0.891 9 C 0.081 3.919 10 C -0.227 4.227 11 N -0.142 5.142 12 C -0.260 4.260 13 C -0.017 4.017 14 C 0.031 3.969 15 C -0.122 4.122 16 C -0.096 4.096 17 C -0.206 4.206 18 C -0.092 4.092 19 N -0.136 5.136 20 H 0.282 0.718 21 N -0.145 5.145 22 C -0.044 4.044 23 C -0.133 4.133 24 N -0.155 5.155 25 H 0.089 0.911 26 H 0.152 0.848 27 H 0.148 0.852 28 H 0.172 0.828 29 H 0.138 0.862 30 H 0.199 0.801 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.593 -1.376 0.245 11.677 hybrid contribution -0.067 1.328 -0.048 1.330 sum -11.660 -0.048 0.197 11.662 Atomic orbital electron populations 1.70027 1.07390 1.28503 1.27322 1.26099 0.94989 1.01368 0.93393 0.86276 0.80074 0.79845 0.80080 1.20076 1.18759 1.18766 1.19587 0.95021 0.89167 1.40716 0.89100 1.19361 0.88731 0.93443 0.90410 1.23267 0.99369 0.89388 1.10716 1.67696 1.08814 1.30014 1.07697 1.22608 0.90641 0.97207 1.15552 1.20649 0.92474 0.91809 0.96785 1.18508 0.91374 0.92336 0.94680 1.21115 0.93264 0.99444 0.98373 1.20127 0.93627 0.95029 1.00790 1.19746 0.91557 0.95503 1.13804 1.22553 0.97793 0.86380 1.02506 1.46221 1.08741 1.05535 1.53136 0.71843 1.77666 0.86939 1.18575 1.31280 1.20767 0.94315 0.90664 0.98606 1.20140 0.88760 0.98249 1.06156 1.69534 1.08039 1.23036 1.14919 0.91113 0.84779 0.85158 0.82807 0.86214 0.80061 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.33 11.49 55.55 0.64 -16.69 16 2 C 0.07 1.60 5.49 -17.35 -0.10 1.51 16 3 Si 0.91 17.32 29.56 -169.99 -5.03 12.30 16 4 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.41 -10.34 9.15 -37.75 -0.35 -10.68 16 8 H 0.09 2.08 7.85 -52.49 -0.41 1.67 16 9 C 0.21 5.48 6.54 -84.84 -0.56 4.93 16 10 C -0.06 -1.42 10.98 -16.54 -0.18 -1.61 16 11 N -0.43 -10.75 10.47 -12.03 -0.13 -10.87 16 12 C -0.10 -2.41 10.59 -16.71 -0.18 -2.59 16 13 C 0.13 3.15 6.73 -82.77 -0.56 2.59 16 14 C 0.04 0.79 5.86 -104.99 -0.62 0.17 16 15 C -0.10 -2.03 9.43 -39.66 -0.37 -2.41 16 16 C -0.08 -1.23 10.06 -39.46 -0.40 -1.63 16 17 C -0.20 -3.09 6.32 -105.15 -0.66 -3.76 16 18 C 0.06 0.72 12.07 -16.60 -0.20 0.52 16 19 N -0.44 -5.00 7.19 30.84 0.22 -4.78 16 20 H 0.44 3.07 8.96 -182.71 -1.64 1.43 16 21 N -0.32 -5.16 12.71 33.23 0.42 -4.74 16 22 C 0.11 1.96 7.48 -83.09 -0.62 1.34 16 23 C -0.11 -2.12 9.48 -38.71 -0.37 -2.49 16 24 N -0.44 -11.55 7.07 -7.51 -0.05 -11.60 16 25 H 0.28 6.09 8.29 -40.82 -0.34 5.75 16 26 H 0.13 3.00 8.06 -52.49 -0.42 2.57 16 27 H 0.13 2.74 6.11 -52.48 -0.32 2.42 16 28 H 0.15 3.34 7.43 -52.48 -0.39 2.95 16 29 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.18 1.17 8.06 -52.49 -0.42 0.74 16 31 H 0.13 2.39 6.08 -52.49 -0.32 2.07 16 LS Contribution 278.89 15.07 4.20 4.20 Total: -1.00 -30.98 278.89 -8.35 -39.34 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -3.48 Total: 6.96 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -5.15 Total: -14.12 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 1.10 Total: -48.68 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.30 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.98 -8.35 -39.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240553486.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.486 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds