Wall clock time and date at job start Mon Mar 30 2020 01:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86802 * 120.00140 * 2 1 4 4 H 1.48506 * 109.47112 * 270.00216 * 3 2 1 5 5 H 1.48495 * 109.47162 * 29.99923 * 3 2 1 6 6 H 1.48501 * 109.47290 * 150.00425 * 3 2 1 7 7 C 1.39930 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00180 * 197.55012 * 7 2 1 9 9 C 1.41440 * 119.99738 * 17.55082 * 7 2 1 10 10 C 1.40825 * 120.60003 * 203.51682 * 9 7 2 11 11 N 1.31496 * 120.66634 * 179.97438 * 10 9 7 12 12 C 1.31938 * 122.12588 * 359.70338 * 11 10 9 13 13 C 1.39710 * 121.14425 * 0.59228 * 12 11 10 14 14 C 1.48360 * 120.41317 * 179.69260 * 13 12 11 15 15 C 1.40516 * 119.87903 * 179.72188 * 14 13 12 16 16 N 1.30625 * 122.43858 * 180.02562 * 15 14 13 17 17 C 1.34300 * 121.51107 * 0.02562 * 16 15 14 18 18 N 1.32054 * 134.15829 * 179.97438 * 17 16 15 19 19 N 1.39891 * 109.11769 * 180.02562 * 18 17 16 20 20 H 0.97006 * 124.99412 * 180.02562 * 19 18 17 21 21 C 1.33860 * 110.00654 * 359.97438 * 19 18 17 22 22 C 1.38372 * 107.78823 * 0.02562 * 21 19 18 23 23 C 1.38362 * 119.87291 * 359.45639 * 14 13 12 24 24 C 1.39197 * 119.17507 * 359.42674 * 13 12 11 25 25 H 0.97004 * 119.99893 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.66370 * 0.02562 * 10 9 7 27 27 H 1.07995 * 119.42811 * 180.29254 * 12 11 10 28 28 H 1.08004 * 118.78237 * 0.03102 * 15 14 13 29 29 H 1.08006 * 126.10815 * 179.97438 * 21 19 18 30 30 H 1.07994 * 121.04522 * 359.97438 * 23 14 13 31 31 H 1.08000 * 120.95498 * 180.29549 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5399 1.4401 0.6999 7 6 2.0079 -1.2118 -0.0005 8 1 3.0502 -1.2337 0.2815 9 6 1.3501 -2.4080 -0.3705 10 6 1.8305 -3.6562 0.0705 11 7 1.2196 -4.7691 -0.2722 12 6 0.1394 -4.7719 -1.0298 13 6 -0.4039 -3.5809 -1.5179 14 6 -1.6153 -3.6035 -2.3741 15 6 -2.1557 -2.3985 -2.8541 16 7 -3.2200 -2.3601 -3.6105 17 6 -3.8634 -3.4814 -3.9744 18 7 -4.9315 -3.7318 -4.7094 19 7 -5.1468 -5.1135 -4.7489 20 1 -5.8702 -5.5504 -5.2252 21 6 -4.2073 -5.7440 -4.0335 22 6 -3.3585 -4.7841 -3.5113 23 6 -2.2054 -4.8113 -2.7015 24 6 0.2022 -2.3725 -1.1863 25 1 -0.4850 0.8401 0.0004 26 1 2.7090 -3.6997 0.6971 27 1 -0.3301 -5.7115 -1.2809 28 1 -1.6732 -1.4696 -2.5879 29 1 -4.1268 -6.8113 -3.8890 30 1 -1.7982 -5.7453 -2.3436 31 1 -0.1964 -1.4346 -1.5439 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241424699.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:48 Heat of formation + Delta-G solvation = 129.044622 kcal Electronic energy + Delta-G solvation = -18430.458426 eV Core-core repulsion = 15485.004685 eV Total energy + Delta-G solvation = -2945.453741 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.27370 -38.75919 -37.45882 -34.19779 -33.21131 -31.38107 -30.63039 -30.33938 -27.88222 -25.90305 -24.70237 -22.94362 -21.84596 -20.55722 -20.33921 -18.23084 -17.56644 -17.04241 -15.98921 -15.55131 -15.11841 -14.87195 -14.82951 -14.13723 -13.39693 -13.35680 -12.85029 -12.81818 -12.41416 -12.20601 -11.63519 -11.51081 -11.34654 -11.06022 -10.93608 -10.64645 -10.57954 -9.94499 -9.44964 -9.03363 -9.00015 -8.58414 -8.13971 -7.89244 -7.11396 -6.88626 -4.56775 0.55567 1.60838 2.38190 2.55829 2.69509 3.01188 3.03318 3.04542 3.15175 3.81798 4.11167 4.20960 4.45443 4.57411 5.06729 5.15860 5.29463 5.42655 5.59259 5.62666 5.88544 5.96853 6.33469 6.40571 6.50436 6.67797 6.82672 6.95494 6.97878 7.03971 7.15261 7.53372 7.57317 7.76059 7.82167 8.28535 8.36239 8.59533 8.62145 9.53936 9.99026 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.025457 B = 0.005208 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.649562 B = 5375.252155 C = 6397.406480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.448 4.448 8 H 0.085 0.915 9 C 0.064 3.936 10 C -0.017 4.017 11 N -0.468 5.468 12 C -0.029 4.029 13 C -0.080 4.080 14 C -0.101 4.101 15 C 0.214 3.786 16 N -0.482 5.482 17 C 0.263 3.737 18 N -0.300 5.300 19 N -0.420 5.420 20 H 0.444 0.556 21 C 0.091 3.909 22 C -0.248 4.248 23 C -0.010 4.010 24 C -0.123 4.123 25 H 0.286 0.714 26 H 0.127 0.873 27 H 0.121 0.879 28 H 0.173 0.827 29 H 0.190 0.810 30 H 0.138 0.862 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.354 -6.908 -5.948 11.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.478 4.478 8 H 0.103 0.897 9 C 0.060 3.940 10 C -0.178 4.178 11 N -0.175 5.175 12 C -0.186 4.186 13 C -0.083 4.083 14 C -0.106 4.106 15 C 0.030 3.970 16 N -0.194 5.194 17 C 0.001 3.999 18 N -0.133 5.133 19 N -0.121 5.121 20 H 0.289 0.711 21 C -0.069 4.069 22 C -0.260 4.260 23 C -0.038 4.038 24 C -0.148 4.148 25 H 0.097 0.903 26 H 0.145 0.855 27 H 0.138 0.862 28 H 0.189 0.811 29 H 0.207 0.793 30 H 0.155 0.845 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.705 -6.255 -6.776 12.017 hybrid contribution 0.495 0.149 0.314 0.605 sum -7.210 -6.106 -6.462 11.447 Atomic orbital electron populations 1.69759 1.07680 1.29936 1.33873 1.25966 0.94809 1.01645 0.91955 0.86228 0.80471 0.80093 0.79569 1.19026 1.20135 1.18443 1.19590 0.98259 0.90792 1.39114 0.89718 1.18450 0.92028 0.93733 0.89828 1.22553 1.02533 0.88014 1.04693 1.66929 1.07698 1.32017 1.10866 1.21704 0.97084 0.95211 1.04641 1.19231 0.94359 0.95677 0.99061 1.19562 0.97474 0.93216 1.00302 1.23358 0.88109 0.98598 0.86978 1.67446 1.09393 1.26822 1.15755 1.21455 0.93378 0.89586 0.95434 1.77686 1.19447 0.89215 1.26931 1.46323 1.22957 1.05702 1.37080 0.71121 1.22665 0.90536 0.98723 0.95008 1.20387 1.02057 0.94333 1.09255 1.20947 0.91297 0.98401 0.93173 1.21802 0.98095 0.95941 0.98954 0.90288 0.85544 0.86191 0.81057 0.79286 0.84450 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.76 10.92 55.55 0.61 -18.15 16 2 C 0.08 1.75 5.18 -17.35 -0.09 1.66 16 3 Si 0.91 17.44 29.59 -169.99 -5.03 12.41 16 4 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.45 -10.96 9.08 -37.73 -0.34 -11.31 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 9 C 0.06 1.60 5.59 -106.70 -0.60 1.00 16 10 C -0.02 -0.40 10.96 -16.72 -0.18 -0.58 16 11 N -0.47 -11.05 10.32 -12.27 -0.13 -11.17 16 12 C -0.03 -0.62 10.59 -16.96 -0.18 -0.80 16 13 C -0.08 -1.75 5.88 -104.82 -0.62 -2.36 16 14 C -0.10 -1.93 5.88 -104.83 -0.62 -2.55 16 15 C 0.21 4.14 10.53 -17.21 -0.18 3.96 16 16 N -0.48 -9.59 10.43 -11.09 -0.12 -9.71 16 17 C 0.26 4.84 8.60 -156.41 -1.35 3.50 16 18 N -0.30 -4.95 12.69 31.96 0.41 -4.54 16 19 N -0.42 -4.47 7.17 30.84 0.22 -4.25 16 20 H 0.44 2.61 8.96 -182.75 -1.64 0.98 16 21 C 0.09 0.94 12.09 -16.62 -0.20 0.74 16 22 C -0.25 -3.82 6.33 -105.19 -0.67 -4.49 16 23 C -0.01 -0.17 9.59 -38.52 -0.37 -0.54 16 24 C -0.12 -2.92 8.16 -38.23 -0.31 -3.24 16 25 H 0.29 6.22 8.30 -40.82 -0.34 5.88 16 26 H 0.13 2.81 8.06 -52.49 -0.42 2.39 16 27 H 0.12 2.22 6.20 -52.49 -0.33 1.90 16 28 H 0.17 3.25 6.16 -52.48 -0.32 2.92 16 29 H 0.19 0.99 8.06 -52.48 -0.42 0.57 16 30 H 0.14 1.89 6.25 -52.49 -0.33 1.56 16 31 H 0.13 3.15 4.38 -52.49 -0.23 2.92 16 LS Contribution 275.17 15.07 4.15 4.15 Total: -1.00 -30.76 275.17 -8.83 -39.60 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -3.24 Total: 6.68 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -5.70 Total: -15.01 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.99 Total: -47.82 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.76 -8.83 -39.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241424699.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.641 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds