Wall clock time and date at job start Mon Mar 30 2020 01:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86802 * 120.00140 * 2 1 4 4 H 1.48506 * 109.47112 * 270.00216 * 3 2 1 5 5 H 1.48495 * 109.47162 * 29.99923 * 3 2 1 6 6 H 1.48501 * 109.47290 * 150.00425 * 3 2 1 7 7 C 1.39930 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00180 * 197.55012 * 7 2 1 9 9 C 1.41440 * 119.99738 * 17.55082 * 7 2 1 10 10 C 1.40825 * 120.60003 * 203.51682 * 9 7 2 11 11 N 1.31496 * 120.66634 * 179.97438 * 10 9 7 12 12 C 1.31938 * 122.12588 * 359.70338 * 11 10 9 13 13 C 1.39710 * 121.14425 * 0.59228 * 12 11 10 14 14 C 1.48360 * 120.41317 * 179.69260 * 13 12 11 15 15 C 1.40516 * 119.87903 * 179.72188 * 14 13 12 16 16 N 1.30625 * 122.43858 * 180.02562 * 15 14 13 17 17 C 1.34300 * 121.51107 * 0.02562 * 16 15 14 18 18 N 1.32054 * 134.15829 * 179.97438 * 17 16 15 19 19 N 1.39891 * 109.11769 * 180.02562 * 18 17 16 20 20 H 0.97006 * 124.99412 * 180.02562 * 19 18 17 21 21 C 1.33860 * 110.00654 * 359.97438 * 19 18 17 22 22 C 1.38372 * 107.78823 * 0.02562 * 21 19 18 23 23 C 1.38362 * 119.87291 * 359.45639 * 14 13 12 24 24 C 1.39197 * 119.17507 * 359.42674 * 13 12 11 25 25 H 0.97004 * 119.99893 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.66370 * 0.02562 * 10 9 7 27 27 H 1.07995 * 119.42811 * 180.29254 * 12 11 10 28 28 H 1.08004 * 118.78237 * 0.03102 * 15 14 13 29 29 H 1.08006 * 126.10815 * 179.97438 * 21 19 18 30 30 H 1.07994 * 121.04522 * 359.97438 * 23 14 13 31 31 H 1.08000 * 120.95498 * 180.29549 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5399 1.4401 0.6999 7 6 2.0079 -1.2118 -0.0005 8 1 3.0502 -1.2337 0.2815 9 6 1.3501 -2.4080 -0.3705 10 6 1.8305 -3.6562 0.0705 11 7 1.2196 -4.7691 -0.2722 12 6 0.1394 -4.7719 -1.0298 13 6 -0.4039 -3.5809 -1.5179 14 6 -1.6153 -3.6035 -2.3741 15 6 -2.1557 -2.3985 -2.8541 16 7 -3.2200 -2.3601 -3.6105 17 6 -3.8634 -3.4814 -3.9744 18 7 -4.9315 -3.7318 -4.7094 19 7 -5.1468 -5.1135 -4.7489 20 1 -5.8702 -5.5504 -5.2252 21 6 -4.2073 -5.7440 -4.0335 22 6 -3.3585 -4.7841 -3.5113 23 6 -2.2054 -4.8113 -2.7015 24 6 0.2022 -2.3725 -1.1863 25 1 -0.4850 0.8401 0.0004 26 1 2.7090 -3.6997 0.6971 27 1 -0.3301 -5.7115 -1.2809 28 1 -1.6732 -1.4696 -2.5879 29 1 -4.1268 -6.8113 -3.8890 30 1 -1.7982 -5.7453 -2.3436 31 1 -0.1964 -1.4346 -1.5439 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241424699.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:48 Heat of formation + Delta-G solvation = 108.833787 kcal Electronic energy + Delta-G solvation = -18431.334834 eV Core-core repulsion = 15485.004685 eV Total energy + Delta-G solvation = -2946.330149 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.42262 -40.36121 -38.86762 -35.95174 -34.63963 -32.76561 -32.06240 -31.85433 -29.27808 -27.62230 -26.05731 -24.42141 -23.45739 -22.10687 -21.53749 -19.34912 -19.17218 -18.36624 -17.64186 -17.10670 -16.39641 -16.27781 -16.26336 -15.77860 -14.91184 -14.47762 -14.40123 -14.24421 -13.91212 -13.67275 -13.30048 -13.14115 -13.08894 -12.61855 -12.18683 -12.14267 -11.92905 -11.65606 -11.17620 -10.40323 -10.37361 -9.96927 -9.83471 -9.64977 -8.71255 -8.47186 -6.41557 -0.58064 0.14121 0.96936 1.19146 1.42601 1.47293 1.55372 1.58190 1.66805 2.21076 2.69375 2.93638 2.96212 3.41570 3.79981 3.90597 3.98662 4.03462 4.14461 4.33818 4.44287 4.59125 4.70571 4.88259 5.02992 5.16085 5.21458 5.25038 5.44156 5.56541 5.86876 5.96230 6.06562 6.20290 6.38031 6.52945 6.79879 6.81963 7.01514 7.74301 8.26969 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.025457 B = 0.005208 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.649562 B = 5375.252155 C = 6397.406480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.039 3.961 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.481 4.481 8 H 0.086 0.914 9 C 0.040 3.960 10 C -0.041 4.041 11 N -0.477 5.477 12 C -0.032 4.032 13 C -0.067 4.067 14 C -0.147 4.147 15 C 0.205 3.795 16 N -0.518 5.518 17 C 0.235 3.765 18 N -0.345 5.345 19 N -0.393 5.393 20 H 0.468 0.532 21 C 0.156 3.844 22 C -0.284 4.284 23 C 0.033 3.967 24 C -0.149 4.149 25 H 0.292 0.708 26 H 0.133 0.867 27 H 0.160 0.840 28 H 0.155 0.845 29 H 0.261 0.739 30 H 0.172 0.828 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.932 -9.868 -7.041 14.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.177 4.177 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.510 4.510 8 H 0.104 0.896 9 C 0.036 3.964 10 C -0.201 4.201 11 N -0.184 5.184 12 C -0.190 4.190 13 C -0.070 4.070 14 C -0.152 4.152 15 C 0.023 3.977 16 N -0.232 5.232 17 C -0.026 4.026 18 N -0.178 5.178 19 N -0.095 5.095 20 H 0.318 0.682 21 C -0.007 4.007 22 C -0.296 4.296 23 C 0.006 3.994 24 C -0.175 4.175 25 H 0.103 0.897 26 H 0.151 0.849 27 H 0.177 0.823 28 H 0.172 0.828 29 H 0.276 0.724 30 H 0.189 0.811 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.302 -9.211 -7.881 15.280 hybrid contribution 0.675 0.755 0.469 1.116 sum -8.626 -8.457 -7.413 14.173 Atomic orbital electron populations 1.69817 1.08996 1.31035 1.34314 1.26750 0.95458 1.04502 0.91012 0.85185 0.79195 0.75787 0.79547 1.18764 1.19434 1.17895 1.19839 0.98592 0.91788 1.40798 0.89616 1.18761 0.92794 0.94427 0.90412 1.22671 1.03434 0.88144 1.05870 1.66959 1.08433 1.31674 1.11376 1.22315 0.96488 0.96628 1.03619 1.19435 0.94623 0.94894 0.98072 1.19335 0.98197 0.94526 1.03181 1.23062 0.88475 0.98495 0.87693 1.67285 1.10095 1.28849 1.16921 1.21704 0.94164 0.90527 0.96209 1.77641 1.19677 0.92320 1.28182 1.46427 1.23168 1.04162 1.35722 0.68210 1.23691 0.86665 1.00585 0.89781 1.20695 1.03347 0.94465 1.11098 1.21281 0.89933 0.98213 0.90005 1.21847 0.98767 0.96810 1.00100 0.89734 0.84907 0.82315 0.82816 0.72352 0.81094 0.85912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.87 10.92 21.82 0.24 -40.63 16 2 C 0.04 1.89 5.18 85.25 0.44 2.33 16 3 Si 0.98 36.74 29.59 68.60 2.03 38.77 16 4 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 5 H -0.27 -9.70 7.11 99.48 0.71 -9.00 16 6 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 7 C -0.48 -24.72 9.08 23.47 0.21 -24.50 16 8 H 0.09 4.20 7.90 -2.91 -0.02 4.18 16 9 C 0.04 2.11 5.59 -21.21 -0.12 1.99 16 10 C -0.04 -2.03 10.96 85.38 0.94 -1.10 16 11 N -0.48 -22.52 10.32 -192.73 -1.99 -24.51 16 12 C -0.03 -1.38 10.59 85.03 0.90 -0.48 16 13 C -0.07 -2.98 5.88 -20.00 -0.12 -3.10 16 14 C -0.15 -5.64 5.88 -20.00 -0.12 -5.76 16 15 C 0.21 8.37 10.53 85.43 0.90 9.27 16 16 N -0.52 -21.38 10.43 -189.00 -1.97 -23.35 16 17 C 0.23 8.41 8.60 136.84 1.18 9.58 16 18 N -0.34 -10.64 12.69 -52.81 -0.67 -11.31 16 19 N -0.39 -6.34 7.17 -56.33 -0.40 -6.74 16 20 H 0.47 2.80 8.96 -213.45 -1.91 0.89 16 21 C 0.16 2.16 12.09 84.42 1.02 3.18 16 22 C -0.28 -7.64 6.33 -20.24 -0.13 -7.77 16 23 C 0.03 0.97 9.59 22.96 0.22 1.19 16 24 C -0.15 -7.53 8.16 23.15 0.19 -7.34 16 25 H 0.29 13.29 8.30 -92.71 -0.77 12.52 16 26 H 0.13 6.17 8.06 -2.91 -0.02 6.15 16 27 H 0.16 5.29 6.20 -2.91 -0.02 5.27 16 28 H 0.15 6.51 6.16 -2.91 -0.02 6.50 16 29 H 0.26 0.00 8.06 -2.91 -0.02 -0.02 16 30 H 0.17 3.72 6.25 -2.91 -0.02 3.70 16 31 H 0.12 6.32 4.38 -2.91 -0.01 6.31 16 Total: -1.00 -73.29 275.17 2.05 -71.24 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -0.70 Total: 19.01 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 5.51 Total: -22.49 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -4.80 Total: -106.54 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.77 kcal Total: -73.29 2.05 -71.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241424699.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.074 kcal (2) G-P(sol) polarization free energy of solvation -73.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds