Wall clock time and date at job start Mon Mar 30 2020 01:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30770 * 1 3 3 Si 1.86797 * 120.00194 * 2 1 4 4 H 1.48504 * 109.46796 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47150 * 299.99994 * 3 2 1 6 6 H 1.48504 * 109.46766 * 60.00308 * 3 2 1 7 7 C 1.40034 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00317 * 179.97438 * 7 2 1 9 9 C 1.40512 * 119.99763 * 359.97438 * 7 2 1 10 10 N 1.34160 * 120.59651 * 355.36310 * 9 7 2 11 11 C 1.31480 * 119.86266 * 179.97438 * 10 9 7 12 12 C 1.39147 * 121.18283 * 0.02562 * 11 10 9 13 13 N 1.31752 * 121.25766 * 359.97438 * 12 11 10 14 14 C 1.33273 * 120.02738 * 0.02562 * 13 12 11 15 15 C 1.47040 * 120.57128 * 179.97438 * 14 13 12 16 16 C 1.38993 * 120.72995 * 231.19528 * 15 14 13 17 17 C 1.38722 * 121.33070 * 180.02562 * 16 15 14 18 18 C 1.36048 * 122.58620 * 359.97438 * 17 16 15 19 19 C 1.40858 * 120.58653 * 0.02562 * 18 17 16 20 20 C 1.38458 * 134.86134 * 179.97438 * 19 18 17 21 21 N 1.34049 * 107.81479 * 180.02562 * 20 19 18 22 22 H 0.96998 * 125.03919 * 180.02562 * 21 20 19 23 23 N 1.39978 * 109.92864 * 0.02562 * 21 20 19 24 24 C 1.31491 * 109.02962 * 359.73558 * 23 21 20 25 25 H 0.97006 * 119.99532 * 359.97438 * 1 2 3 26 26 H 1.07993 * 119.40793 * 179.72475 * 11 10 9 27 27 H 1.07999 * 119.36475 * 179.97438 * 12 11 10 28 28 H 1.07992 * 119.32910 * 359.97438 * 16 15 14 29 29 H 1.07996 * 118.70782 * 179.97438 * 17 16 15 30 30 H 1.08003 * 119.71118 * 180.02562 * 18 17 16 31 31 H 1.08007 * 126.09070 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.7018 1.3462 0.0006 5 1 1.8830 2.3964 -1.2125 6 1 1.8830 2.3963 1.2126 7 6 2.0078 -1.2128 -0.0005 8 1 3.0878 -1.2129 -0.0010 9 6 1.3051 -2.4296 -0.0005 10 7 -0.0331 -2.4453 0.0933 11 6 -0.6761 -3.5922 0.0915 12 6 0.0066 -4.8007 -0.0061 13 7 1.3203 -4.8382 -0.1004 14 6 2.0213 -3.7047 -0.1031 15 6 3.4877 -3.7326 -0.2073 16 6 4.2775 -3.0361 0.7000 17 6 5.6619 -3.0534 0.6131 18 6 6.3270 -3.7440 -0.3522 19 6 5.6200 -4.4829 -1.3208 20 6 5.9782 -5.2693 -2.4026 21 7 4.8520 -5.7250 -2.9691 22 1 4.8143 -6.3017 -3.7482 23 7 3.7382 -5.2454 -2.2699 24 6 4.1495 -4.4993 -1.2684 25 1 -0.4850 0.8401 0.0004 26 1 -1.7530 -3.5965 0.1719 27 1 -0.5510 -5.7256 -0.0044 28 1 3.8038 -2.4696 1.4879 29 1 6.2343 -2.4967 1.3402 30 1 7.4066 -3.7255 -0.3761 31 1 6.9855 -5.4784 -2.7314 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241618323.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:33 Heat of formation + Delta-G solvation = 135.446473 kcal Electronic energy + Delta-G solvation = -18966.798627 eV Core-core repulsion = 16021.622491 eV Total energy + Delta-G solvation = -2945.176136 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.63241 -38.59911 -36.33997 -34.13626 -32.51819 -31.43556 -30.60656 -29.39865 -27.78519 -26.12917 -23.87353 -22.32732 -21.83770 -21.08226 -19.40348 -17.75207 -17.55610 -16.42816 -15.88475 -15.51851 -14.89434 -14.35916 -14.33692 -13.99325 -13.68219 -12.88009 -12.70347 -12.56465 -11.98333 -11.54888 -11.44671 -11.35706 -11.19457 -11.02311 -10.59365 -10.25598 -9.89501 -9.79865 -9.69191 -9.50060 -9.09172 -8.26224 -7.78090 -7.42950 -6.82193 -6.52437 -4.69627 1.05673 2.33350 2.52626 2.84246 2.99181 3.04093 3.05519 3.09637 3.31308 3.78859 4.42717 4.61541 4.78472 4.92157 5.41840 5.57265 5.69729 5.77363 5.88366 5.96643 6.05175 6.30025 6.33907 6.48118 6.66326 6.83435 6.91812 7.02385 7.06123 7.15382 7.35577 7.46413 7.52226 7.72210 8.02284 8.14192 8.34755 8.63982 9.30584 9.84197 10.02177 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.016987 B = 0.007992 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.941228 B = 3502.701912 C = 4599.995927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.700 5.700 2 C 0.062 3.938 3 Si 0.911 3.089 4 H -0.253 1.253 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.392 4.392 8 H 0.102 0.898 9 C 0.223 3.777 10 N -0.460 5.460 11 C 0.091 3.909 12 C -0.125 4.125 13 N -0.398 5.398 14 C -0.032 4.032 15 C 0.065 3.935 16 C -0.105 4.105 17 C -0.125 4.125 18 C -0.087 4.087 19 C -0.197 4.197 20 C 0.053 3.947 21 N -0.442 5.442 22 H 0.437 0.563 23 N -0.278 5.278 24 C 0.119 3.881 25 H 0.279 0.721 26 H 0.127 0.873 27 H 0.124 0.876 28 H 0.131 0.869 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.294 -2.944 -2.294 10.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.319 5.319 2 C -0.166 4.166 3 Si 0.734 3.266 4 H -0.176 1.176 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.422 4.422 8 H 0.120 0.880 9 C 0.098 3.902 10 N -0.176 5.176 11 C -0.079 4.079 12 C -0.286 4.286 13 N -0.109 5.109 14 C -0.181 4.181 15 C 0.061 3.939 16 C -0.128 4.128 17 C -0.145 4.145 18 C -0.107 4.107 19 C -0.207 4.207 20 C -0.102 4.102 21 N -0.143 5.143 22 H 0.280 0.720 23 N -0.105 5.105 24 C -0.039 4.039 25 H 0.090 0.910 26 H 0.145 0.855 27 H 0.141 0.859 28 H 0.149 0.851 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 8.963 -3.273 -2.914 9.977 hybrid contribution 0.855 0.592 -0.189 1.056 sum 9.817 -2.682 -3.103 10.639 Atomic orbital electron populations 1.70125 1.07530 1.28686 1.25578 1.26268 0.95033 1.01778 0.93524 0.86175 0.81262 0.80252 0.78900 1.17585 1.19533 1.19383 1.19850 0.95619 0.88876 1.37811 0.87970 1.20349 0.88736 0.91672 0.89454 1.69590 1.07362 1.24419 1.16228 1.23413 0.99856 0.90409 0.94222 1.22376 0.90986 0.97508 1.17756 1.67822 1.07693 1.29913 1.05474 1.21008 0.91315 0.90091 1.15667 1.18291 0.90241 0.94395 0.90979 1.21016 0.92732 1.00344 0.98757 1.20284 0.94235 1.00805 0.99162 1.19935 0.98084 0.98077 0.94622 1.19574 0.93579 1.07025 1.00541 1.22511 0.92423 0.99244 0.96019 1.46418 1.04174 1.38365 1.25366 0.72014 1.77627 1.04489 1.18674 1.09660 1.22089 0.91775 0.95849 0.94146 0.90967 0.85540 0.85859 0.85074 0.86675 0.86958 0.80346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.88 11.51 55.55 0.64 -17.24 16 2 C 0.06 1.51 5.49 -17.33 -0.10 1.41 16 3 Si 0.91 17.69 29.56 -169.99 -5.02 12.66 16 4 H -0.25 -4.77 7.11 56.52 0.40 -4.37 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 6 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.39 -10.09 8.21 -38.05 -0.31 -10.40 16 8 H 0.10 2.46 5.36 -52.49 -0.28 2.18 16 9 C 0.22 6.13 6.68 -82.62 -0.55 5.58 16 10 N -0.46 -12.70 8.08 -9.53 -0.08 -12.78 16 11 C 0.09 2.26 11.17 -17.37 -0.19 2.06 16 12 C -0.13 -3.07 11.17 -17.25 -0.19 -3.26 16 13 N -0.40 -10.48 10.44 -7.93 -0.08 -10.56 16 14 C -0.03 -0.86 6.52 -80.30 -0.52 -1.38 16 15 C 0.07 1.53 5.39 -102.64 -0.55 0.98 16 16 C -0.11 -2.12 7.64 -39.12 -0.30 -2.42 16 17 C -0.13 -2.08 9.83 -40.19 -0.39 -2.47 16 18 C -0.09 -1.35 10.03 -39.38 -0.39 -1.74 16 19 C -0.20 -3.43 6.34 -105.21 -0.67 -4.09 16 20 C 0.05 0.71 12.09 -16.50 -0.20 0.51 16 21 N -0.44 -6.48 7.19 30.89 0.22 -6.26 16 22 H 0.44 4.43 8.96 -182.69 -1.64 2.79 16 23 N -0.28 -5.88 12.67 34.35 0.44 -5.45 16 24 C 0.12 2.60 7.48 -80.99 -0.61 1.99 16 25 H 0.28 6.36 8.29 -40.82 -0.34 6.03 16 26 H 0.13 2.67 8.06 -52.49 -0.42 2.25 16 27 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 28 H 0.13 2.62 7.35 -52.49 -0.39 2.24 16 29 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 30 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 31 H 0.18 1.42 8.06 -52.48 -0.42 0.99 16 LS Contribution 279.07 15.07 4.21 4.21 Total: -1.00 -33.60 279.07 -8.22 -41.82 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -3.55 Total: 6.85 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -4.98 Total: -13.24 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 1.14 Total: -52.29 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.02 Total: 12.66 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.60 -8.22 -41.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241618323.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.266 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds