Wall clock time and date at job start Mon Mar 30 2020 01:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30770 * 1 3 3 Si 1.86797 * 120.00194 * 2 1 4 4 H 1.48504 * 109.46796 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47150 * 299.99994 * 3 2 1 6 6 H 1.48504 * 109.46766 * 60.00308 * 3 2 1 7 7 C 1.40034 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00317 * 179.97438 * 7 2 1 9 9 C 1.40512 * 119.99763 * 359.97438 * 7 2 1 10 10 N 1.34160 * 120.59651 * 355.36310 * 9 7 2 11 11 C 1.31480 * 119.86266 * 179.97438 * 10 9 7 12 12 C 1.39147 * 121.18283 * 0.02562 * 11 10 9 13 13 N 1.31752 * 121.25766 * 359.97438 * 12 11 10 14 14 C 1.33273 * 120.02738 * 0.02562 * 13 12 11 15 15 C 1.47040 * 120.57128 * 179.97438 * 14 13 12 16 16 C 1.38993 * 120.72995 * 231.19528 * 15 14 13 17 17 C 1.38722 * 121.33070 * 180.02562 * 16 15 14 18 18 C 1.36048 * 122.58620 * 359.97438 * 17 16 15 19 19 C 1.40858 * 120.58653 * 0.02562 * 18 17 16 20 20 C 1.38458 * 134.86134 * 179.97438 * 19 18 17 21 21 N 1.34049 * 107.81479 * 180.02562 * 20 19 18 22 22 H 0.96998 * 125.03919 * 180.02562 * 21 20 19 23 23 N 1.39978 * 109.92864 * 0.02562 * 21 20 19 24 24 C 1.31491 * 109.02962 * 359.73558 * 23 21 20 25 25 H 0.97006 * 119.99532 * 359.97438 * 1 2 3 26 26 H 1.07993 * 119.40793 * 179.72475 * 11 10 9 27 27 H 1.07999 * 119.36475 * 179.97438 * 12 11 10 28 28 H 1.07992 * 119.32910 * 359.97438 * 16 15 14 29 29 H 1.07996 * 118.70782 * 179.97438 * 17 16 15 30 30 H 1.08003 * 119.71118 * 180.02562 * 18 17 16 31 31 H 1.08007 * 126.09070 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.7018 1.3462 0.0006 5 1 1.8830 2.3964 -1.2125 6 1 1.8830 2.3963 1.2126 7 6 2.0078 -1.2128 -0.0005 8 1 3.0878 -1.2129 -0.0010 9 6 1.3051 -2.4296 -0.0005 10 7 -0.0331 -2.4453 0.0933 11 6 -0.6761 -3.5922 0.0915 12 6 0.0066 -4.8007 -0.0061 13 7 1.3203 -4.8382 -0.1004 14 6 2.0213 -3.7047 -0.1031 15 6 3.4877 -3.7326 -0.2073 16 6 4.2775 -3.0361 0.7000 17 6 5.6619 -3.0534 0.6131 18 6 6.3270 -3.7440 -0.3522 19 6 5.6200 -4.4829 -1.3208 20 6 5.9782 -5.2693 -2.4026 21 7 4.8520 -5.7250 -2.9691 22 1 4.8143 -6.3017 -3.7482 23 7 3.7382 -5.2454 -2.2699 24 6 4.1495 -4.4993 -1.2684 25 1 -0.4850 0.8401 0.0004 26 1 -1.7530 -3.5965 0.1719 27 1 -0.5510 -5.7256 -0.0044 28 1 3.8038 -2.4696 1.4879 29 1 6.2343 -2.4967 1.3402 30 1 7.4066 -3.7255 -0.3761 31 1 6.9855 -5.4784 -2.7314 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241618323.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:33 Heat of formation + Delta-G solvation = 111.268839 kcal Electronic energy + Delta-G solvation = -18967.847048 eV Core-core repulsion = 16021.622491 eV Total energy + Delta-G solvation = -2946.224557 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.92652 -40.46949 -37.71792 -35.99524 -34.23596 -33.13966 -32.04345 -30.88873 -29.29526 -27.97543 -25.34448 -24.07224 -23.60296 -22.45812 -20.80602 -19.56013 -18.88695 -17.97872 -17.51561 -16.99556 -16.75117 -15.97751 -15.64371 -15.50979 -15.16915 -14.46430 -14.40546 -14.08382 -13.55723 -13.27642 -13.04515 -12.90188 -12.61783 -12.39664 -12.14142 -11.89444 -11.70088 -11.46255 -11.15681 -11.10632 -10.91638 -9.80972 -9.45053 -9.29774 -8.46472 -8.18641 -6.60925 -0.25835 0.60082 1.06480 1.17204 1.39170 1.53742 1.57650 1.69287 2.01085 2.17368 2.74857 3.04307 3.52155 3.66205 3.81635 4.02573 4.19967 4.38851 4.43718 4.48925 4.57707 4.73346 4.75623 4.95831 5.00376 5.09523 5.18364 5.40465 5.63685 5.75236 5.79620 5.95311 6.12659 6.20078 6.45236 6.47376 6.72446 6.83648 7.39352 7.92161 8.24364 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.016987 B = 0.007992 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.941228 B = 3502.701912 C = 4599.995927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.017 3.983 3 Si 0.991 3.009 4 H -0.242 1.242 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.411 4.411 8 H 0.110 0.890 9 C 0.186 3.814 10 N -0.495 5.495 11 C 0.076 3.924 12 C -0.139 4.139 13 N -0.425 5.425 14 C -0.031 4.031 15 C -0.010 4.010 16 C -0.081 4.081 17 C -0.162 4.162 18 C -0.041 4.041 19 C -0.238 4.238 20 C 0.113 3.887 21 N -0.426 5.426 22 H 0.456 0.544 23 N -0.352 5.352 24 C 0.093 3.907 25 H 0.288 0.712 26 H 0.155 0.845 27 H 0.149 0.851 28 H 0.116 0.884 29 H 0.151 0.849 30 H 0.167 0.833 31 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.789 -2.716 -3.224 15.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.207 4.207 3 Si 0.809 3.191 4 H -0.165 1.165 5 H -0.190 1.190 6 H -0.182 1.182 7 C -0.441 4.441 8 H 0.128 0.872 9 C 0.061 3.939 10 N -0.212 5.212 11 C -0.093 4.093 12 C -0.299 4.299 13 N -0.137 5.137 14 C -0.180 4.180 15 C -0.014 4.014 16 C -0.104 4.104 17 C -0.181 4.181 18 C -0.061 4.061 19 C -0.248 4.248 20 C -0.044 4.044 21 N -0.128 5.128 22 H 0.303 0.697 23 N -0.180 5.180 24 C -0.063 4.063 25 H 0.098 0.902 26 H 0.172 0.828 27 H 0.167 0.833 28 H 0.134 0.866 29 H 0.168 0.832 30 H 0.184 0.816 31 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 13.402 -3.106 -3.854 14.287 hybrid contribution -0.293 0.329 -0.012 0.441 sum 13.109 -2.777 -3.867 13.947 Atomic orbital electron populations 1.70207 1.09347 1.30219 1.26265 1.27298 0.95838 1.05246 0.92359 0.85021 0.80050 0.74854 0.79220 1.16470 1.19035 1.18243 1.20154 0.96097 0.89341 1.38508 0.87237 1.20890 0.89219 0.93160 0.90648 1.69537 1.08030 1.25754 1.17880 1.23839 1.01174 0.90080 0.94207 1.22817 0.91029 0.98556 1.17459 1.67889 1.08431 1.30486 1.06880 1.21568 0.93353 0.89493 1.13589 1.18379 0.89013 0.99316 0.94723 1.21162 0.94679 0.97647 0.96944 1.20568 0.92503 1.03389 1.01631 1.20551 1.00497 0.93563 0.91480 1.20137 0.91592 1.09814 1.03258 1.23602 0.94247 0.94123 0.92463 1.46480 1.03641 1.37466 1.25226 0.69710 1.77532 1.07495 1.21444 1.11502 1.22155 0.94302 0.95881 0.93947 0.90150 0.82803 0.83331 0.86565 0.83173 0.81580 0.73362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.39 11.51 21.84 0.25 -39.14 16 2 C 0.02 0.83 5.49 85.29 0.47 1.30 16 3 Si 0.99 36.46 29.56 68.60 2.03 38.49 16 4 H -0.24 -8.38 7.11 99.48 0.71 -7.67 16 5 H -0.27 -9.49 7.11 99.48 0.71 -8.79 16 6 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 7 C -0.41 -22.21 8.21 23.26 0.19 -22.02 16 8 H 0.11 5.51 5.36 -2.91 -0.02 5.49 16 9 C 0.19 10.91 6.68 41.53 0.28 11.18 16 10 N -0.49 -29.11 8.08 -184.05 -1.49 -30.59 16 11 C 0.08 3.96 11.17 84.96 0.95 4.91 16 12 C -0.14 -7.22 11.17 84.92 0.95 -6.27 16 13 N -0.43 -23.85 10.44 -178.99 -1.87 -25.71 16 14 C -0.03 -1.71 6.52 43.42 0.28 -1.43 16 15 C -0.01 -0.48 5.39 -18.58 -0.10 -0.58 16 16 C -0.08 -3.33 7.64 22.57 0.17 -3.16 16 17 C -0.16 -4.94 9.83 21.88 0.21 -4.73 16 18 C -0.04 -1.07 10.03 22.40 0.22 -0.85 16 19 C -0.24 -7.41 6.34 -20.25 -0.13 -7.54 16 20 C 0.11 2.37 12.09 84.41 1.02 3.39 16 21 N -0.43 -11.23 7.19 -56.17 -0.40 -11.63 16 22 H 0.46 7.76 8.96 -213.40 -1.91 5.84 16 23 N -0.35 -14.98 12.67 -45.23 -0.57 -15.55 16 24 C 0.09 4.07 7.48 43.74 0.33 4.39 16 25 H 0.29 13.57 8.29 -92.70 -0.77 12.80 16 26 H 0.15 6.84 8.06 -2.91 -0.02 6.82 16 27 H 0.15 6.60 8.06 -2.91 -0.02 6.58 16 28 H 0.12 4.91 7.35 -2.91 -0.02 4.89 16 29 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 31 H 0.25 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -82.37 279.07 2.08 -80.29 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -0.72 Total: 25.24 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: 4.85 Total: -21.39 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -4.08 Total: -122.63 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Total: -82.37 2.08 -80.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241618323.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.559 kcal (2) G-P(sol) polarization free energy of solvation -82.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds