Wall clock time and date at job start Mon Mar 30 2020 01:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30770 * 1 3 3 Si 1.86791 * 120.00545 * 2 1 4 4 H 1.48506 * 109.47071 * 270.00190 * 3 2 1 5 5 H 1.48502 * 109.46851 * 29.99732 * 3 2 1 6 6 H 1.48495 * 109.47443 * 150.00073 * 3 2 1 7 7 C 1.39989 * 119.99492 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99681 * 186.34134 * 7 2 1 9 9 C 1.41277 * 120.00061 * 6.34121 * 7 2 1 10 10 C 1.40894 * 120.13846 * 173.79826 * 9 7 2 11 11 N 1.31892 * 120.00343 * 180.02562 * 10 9 7 12 12 C 1.32157 * 120.30759 * 359.97438 * 11 10 9 13 13 C 1.40201 * 120.28691 * 0.02562 * 12 11 10 14 14 C 1.47852 * 120.00691 * 179.97438 * 13 12 11 15 15 C 1.38268 * 120.69600 * 180.02562 * 14 13 12 16 16 C 1.39104 * 121.40354 * 180.02562 * 15 14 13 17 17 C 1.35728 * 122.55315 * 359.94167 * 16 15 14 18 18 C 1.40979 * 120.48982 * 0.03753 * 17 16 15 19 19 C 1.38346 * 134.87357 * 179.97438 * 18 17 16 20 20 N 1.34005 * 107.86203 * 180.02562 * 19 18 17 21 21 H 0.97008 * 125.02985 * 180.02562 * 20 19 18 22 22 N 1.39980 * 109.93442 * 359.97438 * 20 19 18 23 23 C 1.31617 * 108.98371 * 0.02562 * 22 20 19 24 24 N 1.32746 * 119.98501 * 0.25344 * 13 12 11 25 25 H 0.97001 * 119.99428 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99694 * 0.02562 * 10 9 7 27 27 H 1.08009 * 119.85356 * 179.97438 * 12 11 10 28 28 H 1.07999 * 119.30253 * 0.02562 * 15 14 13 29 29 H 1.07997 * 118.72464 * 180.02562 * 16 15 14 30 30 H 1.08002 * 119.75706 * 180.30890 * 17 16 15 31 31 H 1.08007 * 126.06963 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6176 0.0000 4 1 2.4893 2.0463 -1.4001 5 1 1.4393 2.6526 0.7000 6 1 3.5393 1.4400 0.7000 7 6 2.0075 -1.2124 0.0005 8 1 3.0825 -1.2153 0.1038 9 6 1.3075 -2.4322 -0.1340 10 6 2.0154 -3.6433 -0.2651 11 7 1.3592 -4.7804 -0.3911 12 6 0.0377 -4.7910 -0.3947 13 6 -0.6793 -3.5932 -0.2651 14 6 -2.1577 -3.6121 -0.2705 15 6 -2.8791 -2.4393 -0.1442 16 6 -4.2701 -2.4400 -0.1468 17 6 -4.9995 -3.5776 -0.2732 18 6 -4.3595 -4.8265 -0.4084 19 6 -4.7899 -6.1334 -0.5521 20 7 -3.7056 -6.9165 -0.6349 21 1 -3.7218 -7.8806 -0.7405 22 7 -2.5462 -6.1370 -0.5476 23 6 -2.8889 -4.8737 -0.4103 24 7 -0.0306 -2.4415 -0.1432 25 1 -0.4849 0.8401 -0.0004 26 1 3.0954 -3.6405 -0.2624 27 1 -0.4922 -5.7264 -0.4987 28 1 -2.3514 -1.5026 -0.0413 29 1 -4.7898 -1.4988 -0.0458 30 1 -6.0783 -3.5253 -0.2745 31 1 -5.8174 -6.4640 -0.5899 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241622613.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:36 Heat of formation + Delta-G solvation = 137.783293 kcal Electronic energy + Delta-G solvation = -18754.833470 eV Core-core repulsion = 15809.758667 eV Total energy + Delta-G solvation = -2945.074804 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.87823 -38.79153 -36.53289 -33.99553 -32.71258 -31.58731 -30.44554 -29.61460 -27.97390 -25.99696 -24.08427 -22.41700 -22.01460 -21.03092 -19.58116 -17.97310 -17.31423 -16.55558 -15.75232 -15.23898 -15.01382 -14.78995 -14.60210 -13.89682 -13.51547 -13.07166 -12.94791 -12.64996 -11.74394 -11.48119 -11.40367 -11.31335 -11.28491 -10.98049 -10.72746 -10.39346 -10.09082 -9.88931 -9.75987 -9.44260 -9.11627 -8.41054 -7.91951 -7.38157 -6.82269 -6.47298 -4.62347 0.81247 2.19920 2.41798 2.82920 2.88216 3.05625 3.08798 3.15680 3.26401 3.88562 4.30378 4.57684 4.69365 4.77082 5.21639 5.48301 5.59025 5.64447 5.80544 5.86730 6.07819 6.24522 6.34663 6.54784 6.65505 6.75390 6.94950 7.00808 7.11107 7.15513 7.28770 7.34361 7.45549 7.76351 7.92549 8.10844 8.47911 8.72077 9.31982 9.87156 10.18525 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.026038 B = 0.005972 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.109895 B = 4687.565875 C = 5749.377844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.069 3.931 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.418 4.418 8 H 0.090 0.910 9 C 0.209 3.791 10 C -0.064 4.064 11 N -0.434 5.434 12 C -0.095 4.095 13 C 0.135 3.865 14 C -0.004 4.004 15 C -0.055 4.055 16 C -0.140 4.140 17 C -0.066 4.066 18 C -0.205 4.205 19 C 0.069 3.931 20 N -0.438 5.438 21 H 0.439 0.561 22 N -0.293 5.293 23 C 0.122 3.878 24 N -0.442 5.442 25 H 0.275 0.725 26 H 0.133 0.867 27 H 0.147 0.853 28 H 0.157 0.843 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.458 -4.416 -0.561 12.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.157 4.157 3 Si 0.736 3.264 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.451 4.451 8 H 0.108 0.892 9 C 0.082 3.918 10 C -0.233 4.233 11 N -0.145 5.145 12 C -0.254 4.254 13 C -0.011 4.011 14 C -0.009 4.009 15 C -0.078 4.078 16 C -0.159 4.159 17 C -0.086 4.086 18 C -0.215 4.215 19 C -0.087 4.087 20 N -0.139 5.139 21 H 0.283 0.717 22 N -0.120 5.120 23 C -0.035 4.035 24 N -0.160 5.160 25 H 0.087 0.913 26 H 0.150 0.850 27 H 0.164 0.836 28 H 0.174 0.826 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -10.626 -5.121 -0.648 11.813 hybrid contribution -0.408 0.675 -0.031 0.790 sum -11.034 -4.446 -0.679 11.915 Atomic orbital electron populations 1.70065 1.07334 1.28144 1.28148 1.26075 0.94964 1.01249 0.93405 0.86242 0.80425 0.80393 0.79307 1.19335 1.20061 1.18460 1.19549 0.94925 0.89160 1.41430 0.89238 1.19348 0.88735 0.93413 0.90349 1.23266 0.99283 0.89547 1.11181 1.67720 1.09057 1.29889 1.07884 1.23082 0.90411 0.98030 1.13925 1.20511 0.92152 0.91898 0.96495 1.18606 0.90586 0.88069 1.03600 1.21487 0.93013 0.98926 0.94383 1.20493 0.94177 0.97772 1.03489 1.20057 0.98564 0.90206 0.99795 1.19534 0.93163 0.93528 1.15248 1.22556 0.93337 0.90727 1.02094 1.46393 1.04118 1.10277 1.53093 0.71726 1.77550 1.02915 1.02575 1.28966 1.21944 0.92387 0.91529 0.97594 1.69576 1.08036 1.22888 1.15488 0.91349 0.84987 0.83598 0.82592 0.86318 0.86584 0.80023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.03 11.51 55.55 0.64 -17.40 16 2 C 0.07 1.68 5.49 -17.35 -0.10 1.59 16 3 Si 0.91 17.96 29.56 -169.99 -5.03 12.94 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.42 -10.92 9.15 -37.77 -0.35 -11.27 16 8 H 0.09 2.16 7.85 -52.49 -0.41 1.74 16 9 C 0.21 5.80 6.54 -84.84 -0.56 5.24 16 10 C -0.06 -1.68 10.98 -16.52 -0.18 -1.86 16 11 N -0.43 -11.60 10.47 -11.99 -0.13 -11.72 16 12 C -0.10 -2.49 10.66 -16.67 -0.18 -2.66 16 13 C 0.13 3.52 6.73 -82.80 -0.56 2.96 16 14 C 0.00 -0.09 6.06 -102.63 -0.62 -0.71 16 15 C -0.06 -1.11 9.53 -39.25 -0.37 -1.49 16 16 C -0.14 -2.23 9.83 -40.16 -0.39 -2.62 16 17 C -0.07 -0.93 10.03 -39.44 -0.40 -1.33 16 18 C -0.20 -3.19 6.34 -105.21 -0.67 -3.86 16 19 C 0.07 0.78 12.08 -16.56 -0.20 0.58 16 20 N -0.44 -5.49 7.19 30.86 0.22 -5.27 16 21 H 0.44 3.57 8.96 -182.68 -1.64 1.93 16 22 N -0.29 -5.45 10.36 34.32 0.36 -5.09 16 23 C 0.12 2.43 7.11 -81.03 -0.58 1.85 16 24 N -0.44 -12.25 7.17 -7.55 -0.05 -12.30 16 25 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 26 H 0.13 3.13 8.06 -52.49 -0.42 2.71 16 27 H 0.15 3.60 5.44 -52.48 -0.29 3.31 16 28 H 0.16 3.44 7.52 -52.49 -0.39 3.05 16 29 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.18 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 278.41 15.07 4.20 4.20 Total: -1.00 -32.93 278.41 -8.49 -41.42 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -3.56 Total: 6.81 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -5.14 Total: -13.58 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 1.04 Total: -51.78 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.93 -8.49 -41.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241622613.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.208 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds