Wall clock time and date at job start Mon Mar 30 2020 01:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86805 * 120.00217 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72653 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72562 * 3 2 1 6 6 H 1.48494 * 109.47142 * 149.72487 * 3 2 1 7 7 C 1.40115 * 119.99883 * 179.72675 * 2 1 3 8 8 H 1.08000 * 119.99546 * 179.97438 * 7 2 1 9 9 C 1.40965 * 119.99851 * 0.02562 * 7 2 1 10 10 N 1.33687 * 119.12648 * 359.72836 * 9 7 2 11 11 C 1.31546 * 120.83520 * 179.71343 * 10 9 7 12 12 C 1.40535 * 119.08502 * 0.55045 * 11 10 9 13 13 C 1.47747 * 120.79504 * 179.74760 * 12 11 10 14 14 C 1.40223 * 119.93603 * 179.97438 * 13 12 11 15 15 C 1.36165 * 120.51816 * 179.97438 * 14 13 12 16 16 C 1.40092 * 120.08404 * 0.03754 * 15 14 13 17 17 N 1.35554 * 133.39269 * 179.97438 * 16 15 14 18 18 C 1.30231 * 109.71549 * 179.97438 * 17 16 15 19 19 N 1.35947 * 110.13854 * 359.97438 * 18 17 16 20 20 H 0.96997 * 126.36979 * 179.97438 * 19 18 17 21 21 C 1.38182 * 107.26038 * 0.02562 * 19 18 17 22 22 C 1.38398 * 134.02080 * 180.33534 * 21 19 18 23 23 C 1.40525 * 118.40362 * 359.72869 * 12 11 10 24 24 N 1.31544 * 119.09014 * 359.97438 * 23 12 11 25 25 H 0.97000 * 119.99610 * 0.27113 * 1 2 3 26 26 H 1.07999 * 120.45387 * 180.27464 * 11 10 9 27 27 H 1.07999 * 119.74342 * 359.97438 * 14 13 12 28 28 H 1.08002 * 119.95710 * 180.02562 * 15 14 13 29 29 H 1.08002 * 124.92846 * 180.02562 * 18 17 16 30 30 H 1.08007 * 120.21718 * 359.91756 * 22 21 19 31 31 H 1.08005 * 120.45527 * 180.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4941 2.0430 -1.4001 5 1 1.4354 2.6543 0.6942 6 1 3.5354 1.4418 0.7058 7 6 2.0073 -1.2134 0.0058 8 1 3.0873 -1.2134 0.0054 9 6 1.3024 -2.4342 0.0111 10 7 -0.0343 -2.4137 0.0160 11 6 -0.7257 -3.5328 0.0153 12 6 -0.0401 -4.7595 0.0212 13 6 -0.7789 -6.0390 0.0263 14 6 -0.0765 -7.2526 0.0315 15 6 -0.7454 -8.4386 0.0368 16 6 -2.1462 -8.4548 0.0362 17 7 -3.0660 -9.4506 0.0400 18 6 -4.2646 -8.9414 0.0378 19 7 -4.1964 -7.5837 0.0330 20 1 -4.9476 -6.9700 0.0302 21 6 -2.8579 -7.2404 0.0316 22 6 -2.1736 -6.0375 0.0331 23 6 1.3650 -4.7399 0.0216 24 7 1.9885 -3.5816 0.0161 25 1 -0.4849 0.8401 -0.0040 26 1 -1.8055 -3.5091 0.0149 27 1 1.0035 -7.2466 0.0314 28 1 -0.1952 -9.3680 0.0412 29 1 -5.1800 -9.5147 0.0403 30 1 -2.7160 -5.1035 0.0347 31 1 1.9254 -5.6632 0.0256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241697585.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:56 Heat of formation + Delta-G solvation = 112.891505 kcal Electronic energy + Delta-G solvation = -18217.043417 eV Core-core repulsion = 15270.889224 eV Total energy + Delta-G solvation = -2946.154193 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.72121 -39.11067 -36.87627 -34.03310 -32.95456 -32.00524 -31.22283 -29.62308 -28.44959 -25.95710 -23.60356 -22.88833 -21.70658 -21.24615 -20.68130 -18.13574 -17.79931 -16.64123 -16.03586 -15.74352 -14.91414 -14.87724 -14.55996 -13.89713 -13.47191 -13.27802 -13.16504 -12.82353 -12.32428 -12.10705 -11.63295 -11.49619 -11.33033 -11.04944 -10.89374 -10.50710 -10.43697 -9.75455 -9.68711 -9.31208 -9.29584 -8.67543 -8.05136 -7.48086 -7.19918 -6.75977 -4.87705 1.15781 1.83548 2.47644 2.87340 2.93479 2.94127 2.98933 3.13714 3.26854 3.71475 4.24976 4.49377 4.57682 4.91494 5.38863 5.43352 5.61686 5.67184 5.68241 5.77441 5.81229 5.89583 6.13312 6.19489 6.39561 6.57655 6.74614 6.80322 6.86222 6.97260 7.23478 7.36538 7.49868 7.53917 7.94349 8.09692 8.27148 8.35346 8.92887 9.88045 10.07876 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.047704 B = 0.003983 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.808407 B = 7028.527031 C = 7605.489106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.694 5.694 2 C 0.059 3.941 3 Si 0.923 3.077 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.371 4.371 8 H 0.098 0.902 9 C 0.378 3.622 10 N -0.509 5.509 11 C 0.184 3.816 12 C -0.331 4.331 13 C 0.063 3.937 14 C -0.140 4.140 15 C -0.056 4.056 16 C 0.007 3.993 17 N -0.495 5.495 18 C 0.233 3.767 19 N -0.608 5.608 20 H 0.420 0.580 21 C 0.069 3.931 22 C -0.157 4.157 23 C 0.191 3.809 24 N -0.592 5.592 25 H 0.280 0.720 26 H 0.130 0.870 27 H 0.127 0.873 28 H 0.122 0.878 29 H 0.208 0.792 30 H 0.119 0.881 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.044 -7.425 0.025 10.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.314 5.314 2 C -0.170 4.170 3 Si 0.746 3.254 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.404 4.404 8 H 0.116 0.884 9 C 0.146 3.854 10 N -0.225 5.225 11 C 0.006 3.994 12 C -0.341 4.341 13 C 0.059 3.941 14 C -0.160 4.160 15 C -0.076 4.076 16 C -0.110 4.110 17 N -0.215 5.215 18 C -0.054 4.054 19 N -0.220 5.220 20 H 0.257 0.743 21 C -0.040 4.040 22 C -0.179 4.179 23 C 0.016 3.984 24 N -0.310 5.310 25 H 0.091 0.909 26 H 0.148 0.852 27 H 0.145 0.855 28 H 0.140 0.860 29 H 0.225 0.775 30 H 0.137 0.863 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.357 -7.103 0.040 9.533 hybrid contribution -1.066 0.862 -0.016 1.371 sum -7.423 -6.241 0.023 9.698 Atomic orbital electron populations 1.70129 1.07525 1.28813 1.24930 1.26254 0.95156 1.01873 0.93710 0.86049 0.80409 0.79274 0.79648 1.18965 1.19747 1.18030 1.19535 0.95236 0.87880 1.37727 0.88400 1.19955 0.85993 0.90909 0.88560 1.69351 1.08072 1.26784 1.18243 1.23060 0.99005 0.87939 0.89383 1.19679 0.95217 0.92909 1.26289 1.18405 0.90981 0.92365 0.92346 1.20738 0.99946 0.91133 1.04203 1.19838 0.90142 0.98136 0.99440 1.18966 0.94008 0.88137 1.09899 1.70248 0.98384 1.31815 1.21020 1.25084 0.98232 0.80620 1.01428 1.43082 1.06715 1.08442 1.63773 0.74256 1.18805 0.83567 0.96749 1.04914 1.19830 0.93308 0.94170 1.10628 1.22738 0.90442 0.95902 0.89340 1.68667 1.40723 0.98452 1.23171 0.90870 0.85225 0.85501 0.85988 0.77540 0.86265 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.22 11.40 55.55 0.63 -16.59 16 2 C 0.06 1.41 5.50 -17.34 -0.10 1.31 16 3 Si 0.92 17.34 29.56 -169.99 -5.02 12.32 16 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 5 H -0.27 -4.97 7.11 56.52 0.40 -4.56 16 6 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 7 C -0.37 -9.65 9.34 -37.85 -0.35 -10.01 16 8 H 0.10 2.42 7.85 -52.49 -0.41 2.01 16 9 C 0.38 10.24 7.35 -158.14 -1.16 9.08 16 10 N -0.51 -13.49 7.82 -12.40 -0.10 -13.59 16 11 C 0.18 4.23 10.69 -16.81 -0.18 4.05 16 12 C -0.33 -7.08 5.94 -104.28 -0.62 -7.70 16 13 C 0.06 1.16 5.89 -104.81 -0.62 0.54 16 14 C -0.14 -2.32 9.37 -39.58 -0.37 -2.69 16 15 C -0.06 -0.90 10.03 -39.63 -0.40 -1.29 16 16 C 0.01 0.12 7.23 -84.57 -0.61 -0.49 16 17 N -0.49 -7.74 11.26 -11.94 -0.13 -7.88 16 18 C 0.23 2.68 12.97 -89.77 -1.16 1.52 16 19 N -0.61 -7.15 6.24 -11.77 -0.07 -7.22 16 20 H 0.42 3.39 8.96 -40.82 -0.37 3.03 16 21 C 0.07 1.10 7.29 -83.99 -0.61 0.48 16 22 C -0.16 -2.67 9.47 -39.06 -0.37 -3.04 16 23 C 0.19 4.23 10.70 -16.81 -0.18 4.05 16 24 N -0.59 -15.11 10.34 -12.40 -0.13 -15.24 16 25 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 26 H 0.13 2.61 6.32 -52.49 -0.33 2.28 16 27 H 0.13 1.87 6.25 -52.49 -0.33 1.54 16 28 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.21 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.12 1.89 6.27 -52.48 -0.33 1.56 16 31 H 0.13 2.47 6.31 -52.48 -0.33 2.14 16 LS Contribution 276.06 15.07 4.16 4.16 Total: -1.00 -31.63 276.06 -9.47 -41.10 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -2.08 Total: 7.11 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -6.73 Total: -4.18 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.20 Total: -60.51 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.02 Total: 12.32 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.63 -9.47 -41.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241697585.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.995 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds