Wall clock time and date at job start Mon Mar 30 2020 01:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86805 * 120.00217 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72653 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72562 * 3 2 1 6 6 H 1.48494 * 109.47142 * 149.72487 * 3 2 1 7 7 C 1.40115 * 119.99883 * 179.72675 * 2 1 3 8 8 H 1.08000 * 119.99546 * 179.97438 * 7 2 1 9 9 C 1.40965 * 119.99851 * 0.02562 * 7 2 1 10 10 N 1.33687 * 119.12648 * 359.72836 * 9 7 2 11 11 C 1.31546 * 120.83520 * 179.71343 * 10 9 7 12 12 C 1.40535 * 119.08502 * 0.55045 * 11 10 9 13 13 C 1.47747 * 120.79504 * 179.74760 * 12 11 10 14 14 C 1.40223 * 119.93603 * 179.97438 * 13 12 11 15 15 C 1.36165 * 120.51816 * 179.97438 * 14 13 12 16 16 C 1.40092 * 120.08404 * 0.03754 * 15 14 13 17 17 N 1.35554 * 133.39269 * 179.97438 * 16 15 14 18 18 C 1.30231 * 109.71549 * 179.97438 * 17 16 15 19 19 N 1.35947 * 110.13854 * 359.97438 * 18 17 16 20 20 H 0.96997 * 126.36979 * 179.97438 * 19 18 17 21 21 C 1.38182 * 107.26038 * 0.02562 * 19 18 17 22 22 C 1.38398 * 134.02080 * 180.33534 * 21 19 18 23 23 C 1.40525 * 118.40362 * 359.72869 * 12 11 10 24 24 N 1.31544 * 119.09014 * 359.97438 * 23 12 11 25 25 H 0.97000 * 119.99610 * 0.27113 * 1 2 3 26 26 H 1.07999 * 120.45387 * 180.27464 * 11 10 9 27 27 H 1.07999 * 119.74342 * 359.97438 * 14 13 12 28 28 H 1.08002 * 119.95710 * 180.02562 * 15 14 13 29 29 H 1.08002 * 124.92846 * 180.02562 * 18 17 16 30 30 H 1.08007 * 120.21718 * 359.91756 * 22 21 19 31 31 H 1.08005 * 120.45527 * 180.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4941 2.0430 -1.4001 5 1 1.4354 2.6543 0.6942 6 1 3.5354 1.4418 0.7058 7 6 2.0073 -1.2134 0.0058 8 1 3.0873 -1.2134 0.0054 9 6 1.3024 -2.4342 0.0111 10 7 -0.0343 -2.4137 0.0160 11 6 -0.7257 -3.5328 0.0153 12 6 -0.0401 -4.7595 0.0212 13 6 -0.7789 -6.0390 0.0263 14 6 -0.0765 -7.2526 0.0315 15 6 -0.7454 -8.4386 0.0368 16 6 -2.1462 -8.4548 0.0362 17 7 -3.0660 -9.4506 0.0400 18 6 -4.2646 -8.9414 0.0378 19 7 -4.1964 -7.5837 0.0330 20 1 -4.9476 -6.9700 0.0302 21 6 -2.8579 -7.2404 0.0316 22 6 -2.1736 -6.0375 0.0331 23 6 1.3650 -4.7399 0.0216 24 7 1.9885 -3.5816 0.0161 25 1 -0.4849 0.8401 -0.0040 26 1 -1.8055 -3.5091 0.0149 27 1 1.0035 -7.2466 0.0314 28 1 -0.1952 -9.3680 0.0412 29 1 -5.1800 -9.5147 0.0403 30 1 -2.7160 -5.1035 0.0347 31 1 1.9254 -5.6632 0.0256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241697585.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:55 Heat of formation + Delta-G solvation = 93.443353 kcal Electronic energy + Delta-G solvation = -18217.886753 eV Core-core repulsion = 15270.889224 eV Total energy + Delta-G solvation = -2946.997528 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.86218 -40.88132 -38.22789 -35.76261 -34.21123 -33.76252 -32.79674 -30.88204 -30.00945 -27.56543 -25.16936 -24.46036 -23.12758 -22.43436 -22.10609 -19.89282 -18.99643 -17.91532 -17.74750 -17.29422 -16.43583 -16.04808 -16.03143 -15.20747 -15.00281 -14.82199 -14.45822 -14.42635 -13.94554 -13.48218 -13.11760 -13.07645 -12.74218 -12.72030 -12.33989 -11.96417 -11.68771 -11.34951 -11.17390 -11.11677 -10.87857 -10.24332 -9.31641 -9.26870 -8.68362 -8.51397 -6.72724 -0.19494 0.51048 0.95471 1.07772 1.39926 1.50971 1.56466 2.03767 2.14503 2.17372 2.67408 3.07737 3.47176 3.79729 3.90657 3.92683 3.98426 4.10190 4.34444 4.38766 4.42992 4.54946 4.62280 4.84863 4.93680 5.05079 5.21845 5.27621 5.48002 5.57695 5.75967 5.86804 5.99513 6.08412 6.44669 6.52814 6.61947 7.00598 7.12351 8.14102 8.27584 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.047704 B = 0.003983 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.808407 B = 7028.527031 C = 7605.489106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.021 3.979 3 Si 1.003 2.997 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.255 1.255 7 C -0.416 4.416 8 H 0.095 0.905 9 C 0.350 3.650 10 N -0.539 5.539 11 C 0.163 3.837 12 C -0.312 4.312 13 C 0.028 3.972 14 C -0.136 4.136 15 C -0.065 4.065 16 C 0.000 4.000 17 N -0.537 5.537 18 C 0.267 3.733 19 N -0.594 5.594 20 H 0.439 0.561 21 C 0.048 3.952 22 C -0.144 4.144 23 C 0.176 3.824 24 N -0.618 5.618 25 H 0.288 0.712 26 H 0.152 0.848 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.264 0.736 30 H 0.126 0.874 31 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.894 -8.969 0.037 12.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C -0.204 4.204 3 Si 0.821 3.179 4 H -0.183 1.183 5 H -0.185 1.185 6 H -0.179 1.179 7 C -0.449 4.449 8 H 0.113 0.887 9 C 0.117 3.883 10 N -0.256 5.256 11 C -0.012 4.012 12 C -0.321 4.321 13 C 0.024 3.976 14 C -0.156 4.156 15 C -0.085 4.085 16 C -0.117 4.117 17 N -0.258 5.258 18 C -0.020 4.020 19 N -0.207 5.207 20 H 0.280 0.720 21 C -0.062 4.062 22 C -0.166 4.166 23 C 0.003 3.997 24 N -0.337 5.337 25 H 0.099 0.901 26 H 0.169 0.831 27 H 0.159 0.841 28 H 0.159 0.841 29 H 0.280 0.720 30 H 0.144 0.856 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.271 -8.699 0.052 12.004 hybrid contribution -0.812 0.895 -0.019 1.209 sum -9.083 -7.804 0.032 11.975 Atomic orbital electron populations 1.70182 1.09060 1.30225 1.26000 1.27164 0.95952 1.04845 0.92457 0.84905 0.78832 0.74328 0.79858 1.18279 1.18481 1.17858 1.19810 0.95359 0.89030 1.40716 0.88738 1.20357 0.86657 0.91871 0.89424 1.69314 1.08155 1.28393 1.19766 1.23513 1.00105 0.88083 0.89494 1.19915 0.95192 0.93785 1.23222 1.18324 0.91710 0.91613 0.95941 1.20843 1.00675 0.90627 1.03497 1.20063 0.90415 0.98631 0.99359 1.19377 0.94764 0.88982 1.08618 1.70308 0.99561 1.32057 1.23897 1.26250 0.98927 0.80444 0.96370 1.43139 1.05847 1.09194 1.62516 0.71974 1.18802 0.85466 0.96030 1.05943 1.19928 0.92999 0.95097 1.08585 1.23333 0.91344 0.96202 0.88852 1.68683 1.41363 0.99134 1.24532 0.90057 0.83077 0.84142 0.84097 0.72035 0.85639 0.81412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.70 11.40 21.85 0.25 -37.45 16 2 C 0.02 1.02 5.50 85.32 0.47 1.49 16 3 Si 1.00 36.28 29.56 68.60 2.03 38.30 16 4 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 5 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 6 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 7 C -0.42 -22.72 9.34 23.39 0.22 -22.50 16 8 H 0.09 4.96 7.85 -2.91 -0.02 4.94 16 9 C 0.35 19.94 7.35 134.85 0.99 20.93 16 10 N -0.54 -29.82 7.82 -193.15 -1.51 -31.33 16 11 C 0.16 7.71 10.69 85.30 0.91 8.63 16 12 C -0.31 -13.47 5.94 -19.65 -0.12 -13.59 16 13 C 0.03 1.00 5.89 -19.98 -0.12 0.88 16 14 C -0.14 -4.33 9.37 22.27 0.21 -4.12 16 15 C -0.07 -1.97 10.03 22.24 0.22 -1.75 16 16 C 0.00 -0.01 7.23 39.64 0.29 0.28 16 17 N -0.54 -14.98 11.26 -191.70 -2.16 -17.14 16 18 C 0.27 4.86 12.97 180.05 2.33 7.19 16 19 N -0.59 -11.58 6.24 -191.14 -1.19 -12.77 16 20 H 0.44 5.22 8.96 -92.71 -0.83 4.39 16 21 C 0.05 1.40 7.29 38.80 0.28 1.69 16 22 C -0.14 -4.70 9.47 22.61 0.21 -4.49 16 23 C 0.18 7.91 10.70 85.29 0.91 8.82 16 24 N -0.62 -32.76 10.34 -193.16 -2.00 -34.75 16 25 H 0.29 13.08 8.29 -92.71 -0.77 12.31 16 26 H 0.15 6.18 6.32 -2.91 -0.02 6.16 16 27 H 0.14 3.93 6.25 -2.91 -0.02 3.91 16 28 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 29 H 0.26 1.52 8.06 -2.91 -0.02 1.50 16 30 H 0.13 3.81 6.27 -2.91 -0.02 3.80 16 31 H 0.17 6.11 6.31 -2.91 -0.02 6.09 16 Total: -1.00 -72.31 276.06 2.62 -69.69 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.38 Total: 22.00 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 6.82 Total: 3.45 kcal Atomic # 7 Polarization: -126.83 SS G_CDS: -6.61 Total: -133.44 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.30 kcal Total: -72.31 2.62 -69.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241697585.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.133 kcal (2) G-P(sol) polarization free energy of solvation -72.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds