Wall clock time and date at job start Mon Mar 30 2020 00:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39691 * 120.07011 * 197.88503 * 3 2 1 5 5 C 1.38106 * 120.15468 * 179.73980 * 4 3 2 6 6 C 1.38053 * 120.29967 * 0.51494 * 5 4 3 7 7 C 1.39700 * 120.13814 * 359.76020 * 6 5 4 8 8 C 1.47908 * 120.08015 * 180.02562 * 7 6 5 9 9 C 1.39040 * 120.31889 * 129.70335 * 8 7 6 10 10 C 1.38404 * 119.95967 * 179.79155 * 9 8 7 11 11 F 1.35095 * 119.69777 * 180.25473 * 10 9 8 12 12 C 1.39209 * 120.60628 * 0.48767 * 10 9 8 13 13 C 1.36357 * 120.65199 * 359.74772 * 12 10 9 14 14 C 1.40791 * 120.01411 * 0.02562 * 13 12 10 15 15 C 1.40824 * 120.29969 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00370 * 153.00259 * 15 14 13 17 17 C 1.40047 * 120.00081 * 333.00394 * 15 14 13 18 18 N 1.30807 * 119.99340 * 344.35306 * 17 15 14 19 19 Si 1.86798 * 120.00568 * 164.35150 * 17 15 14 20 20 H 1.48504 * 109.46681 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47089 * 119.99809 * 19 17 15 22 22 H 1.48497 * 109.47109 * 240.00247 * 19 17 15 23 23 C 1.39234 * 120.07125 * 18.15768 * 3 2 1 24 24 H 4.52058 * 14.04459 * 0.02562 * 4 2 1 25 25 H 1.07998 * 119.91936 * 359.97438 * 4 3 2 26 26 H 1.07998 * 119.84926 * 180.23523 * 5 4 3 27 27 H 1.07997 * 119.93202 * 179.74446 * 6 5 4 28 28 H 1.08002 * 120.01552 * 0.02568 * 9 8 7 29 29 H 1.07994 * 119.67588 * 179.72279 * 12 10 9 30 30 H 1.07994 * 119.99646 * 180.02562 * 13 12 10 31 31 H 0.97008 * 119.99299 * 179.97438 * 18 17 15 32 32 H 1.07998 * 120.14792 * 0.02745 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3054 1.1514 0.3713 5 6 4.6864 1.1523 0.3771 6 6 5.3852 0.0209 0.0063 7 6 4.6983 -1.1350 -0.3727 8 6 5.4483 -2.3466 -0.7691 9 6 5.1428 -3.5784 -0.2011 10 6 5.8465 -4.7081 -0.5806 11 9 5.5418 -5.9031 -0.0291 12 6 6.8686 -4.6235 -1.5220 13 6 7.1921 -3.4275 -2.0913 14 6 6.4905 -2.2621 -1.7283 15 6 6.8200 -1.0236 -2.3121 16 1 6.0712 -0.2499 -2.3960 17 6 8.1186 -0.7953 -2.7840 18 7 9.0951 -1.5860 -2.4201 19 14 8.4565 0.6382 -3.9330 20 1 7.1930 1.3753 -4.1895 21 1 9.4441 1.5530 -3.3061 22 1 9.0008 0.1264 -5.2163 23 6 3.3041 -1.1440 -0.3755 24 1 -1.0501 -0.0010 0.0002 25 1 2.7648 2.0413 0.6581 26 1 5.2222 2.0436 0.6686 27 1 6.4652 0.0295 0.0091 28 1 4.3544 -3.6541 0.5332 29 1 7.4108 -5.5139 -1.8039 30 1 7.9866 -3.3741 -2.8208 31 1 9.9946 -1.4280 -2.7472 32 1 2.7681 -2.0348 -0.6680 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241919041.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:44 Heat of formation + Delta-G solvation = 29.101301 kcal Electronic energy + Delta-G solvation = -18444.324425 eV Core-core repulsion = 15442.324104 eV Total energy + Delta-G solvation = -3002.000321 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.080 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.34827 -40.47018 -38.85641 -35.56318 -34.79930 -33.14975 -31.57773 -30.92812 -29.83541 -27.02008 -24.25054 -24.18179 -22.74785 -21.88993 -19.62928 -19.24159 -17.81531 -17.32257 -17.03685 -16.54898 -16.12790 -16.06770 -15.75349 -15.69323 -14.68054 -14.41271 -14.28934 -14.11356 -13.80013 -13.69721 -13.16102 -12.84058 -12.66686 -12.44261 -12.30011 -12.13999 -12.01003 -11.67371 -11.53371 -11.20655 -11.07407 -10.03526 -9.51239 -9.28310 -9.06828 -8.70017 -6.35362 0.07082 0.31630 0.76825 1.03343 1.41024 1.46666 1.54901 1.83945 2.17016 2.18901 2.60168 3.12433 3.42437 3.57569 3.83492 4.11339 4.11413 4.24380 4.30048 4.49522 4.55401 4.68336 4.79795 4.99964 5.09191 5.15533 5.24441 5.30241 5.41461 5.55157 5.58259 5.72414 5.78828 5.88293 6.04462 6.13878 6.21961 6.54423 6.63621 6.81307 6.87633 8.23738 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.012643 B = 0.008138 C = 0.005326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.060974 B = 3439.641627 C = 5256.190231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.194 4.194 3 C -0.009 4.009 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.098 4.098 7 C -0.008 4.008 8 C -0.171 4.171 9 C -0.100 4.100 10 C -0.060 4.060 11 F -0.170 7.170 12 C -0.126 4.126 13 C -0.154 4.154 14 C 0.098 3.902 15 C -0.457 4.457 16 H 0.083 0.917 17 C 0.042 3.958 18 N -0.811 5.811 19 Si 0.974 3.026 20 H -0.259 1.259 21 H -0.263 1.263 22 H -0.265 1.265 23 C -0.113 4.113 24 H 0.265 0.735 25 H 0.147 0.853 26 H 0.153 0.847 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.293 0.707 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.273 6.321 1.778 9.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.194 4.194 3 C -0.009 4.009 4 C -0.128 4.128 5 C -0.135 4.135 6 C -0.116 4.116 7 C -0.008 4.008 8 C -0.173 4.173 9 C -0.119 4.119 10 C -0.080 4.080 11 F -0.150 7.150 12 C -0.146 4.146 13 C -0.174 4.174 14 C 0.095 3.905 15 C -0.485 4.485 16 H 0.101 0.899 17 C -0.175 4.175 18 N -0.435 5.435 19 Si 0.795 3.205 20 H -0.183 1.183 21 H -0.188 1.188 22 H -0.190 1.190 23 C -0.131 4.131 24 H 0.281 0.719 25 H 0.164 0.836 26 H 0.170 0.830 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.104 0.896 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.004 6.238 1.783 9.547 hybrid contribution 0.431 -0.251 -0.395 0.636 sum -6.573 5.987 1.388 8.998 Atomic orbital electron populations 1.25761 0.96363 0.97390 0.97722 1.20447 0.92581 1.03221 1.03108 1.16026 0.87394 0.94718 1.02795 1.21386 0.94121 0.97256 1.00026 1.21255 0.93926 0.98420 0.99880 1.21511 1.00356 0.92634 0.97099 1.18614 0.92004 0.93429 0.96720 1.18634 1.04141 0.91695 1.02793 1.20739 0.99458 0.91339 1.00373 1.17315 1.04711 0.80603 1.05367 1.91285 1.93368 1.44818 1.85487 1.20667 0.97214 0.98880 0.97790 1.20914 1.02810 0.91039 1.02596 1.17915 0.89601 0.93870 0.89086 1.19730 0.96410 0.99327 1.33059 0.89854 1.26719 0.95151 1.00089 0.95589 1.69825 1.02179 1.36606 1.34907 0.85248 0.79367 0.77728 0.78147 1.18250 1.18763 1.18964 1.21332 0.93026 0.97740 1.01014 0.71936 0.83565 0.82962 0.86485 0.86461 0.86318 0.86322 0.89562 0.86690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 19.25 74.32 1.43 -2.02 16 2 C -0.19 -5.75 13.23 30.02 0.40 -5.35 16 3 C -0.01 -0.31 5.72 -21.44 -0.12 -0.44 16 4 C -0.11 -3.28 9.75 22.59 0.22 -3.06 16 5 C -0.12 -3.63 10.02 22.19 0.22 -3.40 16 6 C -0.10 -3.79 8.00 22.58 0.18 -3.61 16 7 C -0.01 -0.32 4.92 -20.08 -0.10 -0.42 16 8 C -0.17 -8.10 5.52 -19.62 -0.11 -8.21 16 9 C -0.10 -4.61 9.48 22.50 0.21 -4.40 16 10 C -0.06 -2.83 7.31 22.54 0.16 -2.67 16 11 F -0.17 -7.65 17.26 44.97 0.78 -6.87 16 12 C -0.13 -5.95 9.94 22.06 0.22 -5.73 16 13 C -0.15 -7.72 8.61 22.46 0.19 -7.53 16 14 C 0.10 4.96 5.55 -21.12 -0.12 4.85 16 15 C -0.46 -22.33 7.09 23.34 0.17 -22.16 16 16 H 0.08 4.03 6.65 -2.91 -0.02 4.01 16 17 C 0.04 1.92 5.16 85.28 0.44 2.36 16 18 N -0.81 -38.61 10.99 21.85 0.24 -38.37 16 19 Si 0.97 35.14 29.59 68.60 2.03 37.17 16 20 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 21 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 22 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 23 C -0.11 -4.34 9.22 22.80 0.21 -4.13 16 24 H 0.26 2.95 7.80 -4.41 -0.03 2.91 16 25 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 26 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 27 H 0.12 4.86 7.30 -2.91 -0.02 4.83 16 28 H 0.12 4.92 8.04 -2.91 -0.02 4.89 16 29 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 30 H 0.12 6.04 6.26 -2.91 -0.02 6.02 16 31 H 0.29 12.56 8.30 -92.70 -0.77 11.79 16 32 H 0.12 4.36 8.05 -2.91 -0.02 4.33 16 Total: -1.00 -56.57 294.49 7.80 -48.78 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 1.14 Total: 25.22 kcal Atomic # 6 Polarization: -69.53 SS G_CDS: 3.61 Total: -65.92 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.24 Total: -38.37 kcal Atomic # 9 Polarization: -7.65 SS G_CDS: 0.78 Total: -6.87 kcal Atomic # 14 Polarization: 35.14 SS G_CDS: 2.03 Total: 37.17 kcal Total: -56.57 7.80 -48.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241919041.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.877 kcal (2) G-P(sol) polarization free energy of solvation -56.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds