Wall clock time and date at job start Mon Mar 30 2020 00:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39691 * 120.06495 * 188.90870 * 3 2 1 5 5 C 1.38109 * 120.15729 * 179.76890 * 4 3 2 6 6 C 1.38047 * 120.29911 * 0.51140 * 5 4 3 7 7 C 1.39713 * 120.13838 * 359.74328 * 6 5 4 8 8 C 1.47876 * 120.08400 * 179.97438 * 7 6 5 9 9 C 1.39132 * 120.25383 * 129.74480 * 8 7 6 10 10 C 1.38026 * 120.13919 * 179.76787 * 9 8 7 11 11 C 1.39169 * 120.64238 * 0.51113 * 10 9 8 12 12 F 1.35108 * 119.74805 * 179.72252 * 11 10 9 13 13 C 1.37641 * 120.50437 * 359.74453 * 11 10 9 14 14 C 1.40713 * 119.84416 * 359.97438 * 13 11 10 15 15 C 1.40891 * 120.31467 * 179.97438 * 14 13 11 16 16 H 1.08009 * 119.99584 * 154.16145 * 15 14 13 17 17 C 1.40057 * 120.00188 * 334.15665 * 15 14 13 18 18 N 1.30780 * 120.00000 * 344.25860 * 17 15 14 19 19 Si 1.86797 * 119.99851 * 164.25107 * 17 15 14 20 20 H 1.48496 * 109.47358 * 60.00485 * 19 17 15 21 21 H 1.48500 * 109.47031 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47537 * 300.00288 * 19 17 15 23 23 C 1.39234 * 120.07003 * 9.18606 * 3 2 1 24 24 H 4.52051 * 14.04430 * 0.02562 * 4 2 1 25 25 H 1.07996 * 119.92208 * 0.02562 * 4 3 2 26 26 H 1.08003 * 119.85025 * 180.25682 * 5 4 3 27 27 H 1.08001 * 119.93375 * 179.76861 * 6 5 4 28 28 H 1.08004 * 119.92612 * 359.97438 * 9 8 7 29 29 H 1.07999 * 119.67505 * 180.25968 * 10 9 8 30 30 H 1.08005 * 120.07885 * 180.02562 * 13 11 10 31 31 H 0.96996 * 119.99602 * 179.97438 * 18 17 15 32 32 H 1.07993 * 120.14761 * 359.95616 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3053 1.1953 0.1872 5 6 4.6864 1.1974 0.1923 6 6 5.3854 0.0222 0.0022 7 6 4.6986 -1.1789 -0.1915 8 6 5.4485 -2.4370 -0.3956 9 6 5.1425 -3.5657 0.3582 10 6 5.8408 -4.7400 0.1624 11 6 6.8629 -4.8089 -0.7796 12 9 7.5384 -5.9662 -0.9525 13 6 7.1912 -3.7069 -1.5361 14 6 6.4889 -2.5007 -1.3578 15 6 6.8171 -1.3664 -2.1265 16 1 6.0724 -0.6066 -2.3129 17 6 8.1089 -1.2241 -2.6487 18 7 9.0861 -1.9594 -2.1853 19 14 8.4358 0.0157 -4.0070 20 1 8.0908 1.3781 -3.5274 21 1 9.8719 -0.0284 -4.3824 22 1 7.6046 -0.3172 -5.1917 23 6 3.3042 -1.1885 -0.1924 24 1 -1.0500 -0.0011 0.0003 25 1 2.7647 2.1189 0.3325 26 1 5.2220 2.1233 0.3416 27 1 6.4653 0.0313 0.0036 28 1 4.3547 -3.5236 1.0958 29 1 5.5942 -5.6128 0.7488 30 1 7.9854 -3.7682 -2.2655 31 1 9.9807 -1.8610 -2.5473 32 1 2.7682 -2.1142 -0.3413 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241922210.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:53 Heat of formation + Delta-G solvation = 27.919207 kcal Electronic energy + Delta-G solvation = -18443.228011 eV Core-core repulsion = 15441.176430 eV Total energy + Delta-G solvation = -3002.051581 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.080 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.59108 -40.44172 -38.78422 -35.66477 -34.74477 -32.91317 -31.81191 -30.95295 -29.40186 -27.38148 -24.18575 -24.01618 -22.90870 -21.79402 -19.60521 -19.34304 -17.80939 -17.34748 -16.77694 -16.54636 -16.48986 -16.25517 -15.75471 -15.35135 -14.74110 -14.45197 -14.40339 -14.28540 -13.68721 -13.42478 -13.21609 -12.85444 -12.76843 -12.40622 -12.22419 -12.09234 -11.96660 -11.81732 -11.47042 -11.26342 -11.10579 -9.89489 -9.55111 -9.37954 -8.95328 -8.66424 -6.43538 0.08755 0.32945 0.85222 0.99392 1.38000 1.48215 1.50856 1.86131 2.15968 2.19032 2.60469 3.14429 3.43909 3.57635 3.76142 4.08322 4.15003 4.32679 4.44604 4.50309 4.57029 4.70563 4.82180 4.99991 5.05145 5.14487 5.25217 5.33107 5.48146 5.60380 5.60967 5.73782 5.77541 5.84124 6.03128 6.16724 6.24002 6.53711 6.65790 6.80344 6.84195 8.21661 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.014279 B = 0.007488 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.434777 B = 3738.307967 C = 5296.167320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.192 4.192 3 C -0.009 4.009 4 C -0.111 4.111 5 C -0.118 4.118 6 C -0.101 4.101 7 C -0.005 4.005 8 C -0.195 4.195 9 C -0.047 4.047 10 C -0.277 4.277 11 C 0.094 3.906 12 F -0.167 7.167 13 C -0.224 4.224 14 C 0.121 3.879 15 C -0.461 4.461 16 H 0.088 0.912 17 C 0.039 3.961 18 N -0.812 5.812 19 Si 0.975 3.025 20 H -0.252 1.252 21 H -0.268 1.268 22 H -0.263 1.263 23 C -0.111 4.111 24 H 0.264 0.736 25 H 0.145 0.855 26 H 0.150 0.850 27 H 0.114 0.886 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.113 0.887 31 H 0.292 0.708 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.951 6.417 2.286 11.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.192 4.192 3 C -0.009 4.009 4 C -0.129 4.129 5 C -0.136 4.136 6 C -0.119 4.119 7 C -0.005 4.005 8 C -0.196 4.196 9 C -0.065 4.065 10 C -0.297 4.297 11 C 0.075 3.925 12 F -0.146 7.146 13 C -0.244 4.244 14 C 0.119 3.881 15 C -0.489 4.489 16 H 0.106 0.894 17 C -0.178 4.178 18 N -0.437 5.437 19 Si 0.795 3.205 20 H -0.176 1.176 21 H -0.192 1.192 22 H -0.187 1.187 23 C -0.129 4.129 24 H 0.280 0.720 25 H 0.163 0.837 26 H 0.167 0.833 27 H 0.132 0.868 28 H 0.147 0.853 29 H 0.144 0.856 30 H 0.130 0.870 31 H 0.103 0.897 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.640 6.328 2.271 10.948 hybrid contribution 0.778 -0.307 -0.653 1.061 sum -7.862 6.022 1.618 10.034 Atomic orbital electron populations 1.25749 0.96360 0.97419 0.97806 1.20439 0.92558 1.03177 1.03049 1.16024 0.87357 0.94031 1.03477 1.21365 0.94048 0.97097 1.00419 1.21228 0.93967 0.98248 1.00122 1.21516 1.00246 0.92289 0.97847 1.18631 0.92054 0.92932 0.96893 1.18936 1.04334 0.93819 1.02510 1.20724 0.97472 0.90961 0.97334 1.20490 1.02770 1.00390 1.06022 1.17987 0.94000 0.81156 0.99365 1.91327 1.79731 1.48436 1.95089 1.21210 1.06264 0.92296 1.04635 1.17577 0.89083 0.91973 0.89516 1.19726 0.96926 1.04987 1.27218 0.89442 1.26798 0.95153 0.98118 0.97747 1.69832 1.02284 1.35562 1.36008 0.85334 0.78184 0.78867 0.78082 1.17570 1.19248 1.18717 1.21345 0.92886 0.97458 1.01209 0.72009 0.83726 0.83270 0.86791 0.85295 0.85558 0.86960 0.89682 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 19.25 74.32 1.43 -1.91 16 2 C -0.19 -5.52 13.23 30.02 0.40 -5.13 16 3 C -0.01 -0.29 5.72 -21.44 -0.12 -0.41 16 4 C -0.11 -3.27 9.74 22.59 0.22 -3.05 16 5 C -0.12 -3.63 10.02 22.19 0.22 -3.41 16 6 C -0.10 -3.87 7.96 22.58 0.18 -3.69 16 7 C -0.01 -0.21 4.92 -20.08 -0.10 -0.31 16 8 C -0.19 -9.03 5.52 -19.61 -0.11 -9.13 16 9 C -0.05 -2.00 9.49 22.43 0.21 -1.79 16 10 C -0.28 -12.24 10.01 22.44 0.22 -12.02 16 11 C 0.09 4.65 7.28 22.35 0.16 4.81 16 12 F -0.17 -7.96 17.26 44.97 0.78 -7.19 16 13 C -0.22 -11.87 8.64 22.73 0.20 -11.67 16 14 C 0.12 6.27 5.56 -21.13 -0.12 6.15 16 15 C -0.46 -23.01 7.13 23.36 0.17 -22.84 16 16 H 0.09 4.26 6.58 -2.91 -0.02 4.24 16 17 C 0.04 1.86 5.17 85.29 0.44 2.30 16 18 N -0.81 -40.68 10.92 21.85 0.24 -40.44 16 19 Si 0.97 36.19 29.59 68.60 2.03 38.22 16 20 H -0.25 -8.90 7.11 99.48 0.71 -8.20 16 21 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 22 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 23 C -0.11 -4.09 9.22 22.80 0.21 -3.88 16 24 H 0.26 2.76 7.80 -4.42 -0.03 2.72 16 25 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 26 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 27 H 0.11 4.76 7.29 -2.91 -0.02 4.73 16 28 H 0.13 4.70 8.04 -2.91 -0.02 4.67 16 29 H 0.13 4.86 8.06 -2.91 -0.02 4.83 16 30 H 0.11 6.26 6.18 -2.91 -0.02 6.24 16 31 H 0.29 13.30 8.29 -92.71 -0.77 12.53 16 32 H 0.12 4.25 8.04 -2.91 -0.02 4.23 16 Total: -1.00 -58.11 294.36 7.80 -50.31 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 1.14 Total: 25.09 kcal Atomic # 6 Polarization: -69.61 SS G_CDS: 3.62 Total: -65.99 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.24 Total: -40.44 kcal Atomic # 9 Polarization: -7.96 SS G_CDS: 0.78 Total: -7.19 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.22 kcal Total: -58.11 7.80 -50.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241922210.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.228 kcal (2) G-P(sol) polarization free energy of solvation -58.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds