Wall clock time and date at job start Mon Mar 30 2020 00:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39618 * 120.08136 * 14.16034 * 3 2 1 5 5 C 1.38041 * 120.09423 * 179.71714 * 4 3 2 6 6 C 1.38141 * 120.27331 * 0.55883 * 5 4 3 7 7 C 1.39406 * 120.16735 * 359.72359 * 6 5 4 8 8 C 1.48391 * 120.05371 * 180.02562 * 7 6 5 9 9 C 1.38658 * 120.01658 * 309.69909 * 8 7 6 10 10 C 1.40555 * 119.65884 * 179.79438 * 9 8 7 11 11 C 1.41341 * 120.15727 * 180.25108 * 10 9 8 12 12 H 1.08000 * 119.99705 * 334.87712 * 11 10 9 13 13 C 1.39901 * 119.99730 * 154.87550 * 11 10 9 14 14 N 1.30856 * 120.00276 * 342.93496 * 13 11 10 15 15 Si 1.86797 * 119.99751 * 162.93349 * 13 11 10 16 16 H 1.48506 * 109.47310 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47292 * 120.00128 * 15 13 11 18 18 H 1.48494 * 109.47318 * 239.99994 * 15 13 11 19 19 C 1.40846 * 119.68633 * 0.48373 * 10 9 8 20 20 C 1.37555 * 120.02241 * 359.74439 * 19 10 9 21 21 C 1.38766 * 120.34649 * 0.02728 * 20 19 10 22 22 F 1.35105 * 119.84059 * 180.02562 * 21 20 19 23 23 C 1.39127 * 119.88986 * 359.97438 * 7 6 5 24 24 H 4.52027 * 14.04021 * 0.02562 * 4 2 1 25 25 H 1.07995 * 119.95033 * 359.97438 * 4 3 2 26 26 H 1.08005 * 119.86226 * 180.26145 * 5 4 3 27 27 H 1.07998 * 119.91767 * 179.69297 * 6 5 4 28 28 H 1.08000 * 120.17115 * 0.02562 * 9 8 7 29 29 H 0.97003 * 120.00432 * 179.97438 * 14 13 11 30 30 H 1.07995 * 119.99101 * 179.72565 * 19 10 9 31 31 H 1.07997 * 119.82912 * 180.02562 * 20 19 10 32 32 H 1.08000 * 120.12807 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3064 -1.1705 -0.2956 5 6 4.6868 -1.1687 -0.3013 6 6 5.3830 -0.0132 -0.0040 7 6 4.6950 1.1609 0.2985 8 6 5.4454 2.4009 0.6169 9 6 6.4584 2.3749 1.5634 10 6 7.1672 3.5528 1.8561 11 6 8.2052 3.5371 2.8153 12 1 8.2070 2.7918 3.5968 13 6 9.2304 4.4870 2.7521 14 7 9.4261 5.1662 1.6508 15 14 10.3197 4.7859 4.2398 16 1 9.8955 3.8963 5.3507 17 1 11.7323 4.4954 3.8855 18 1 10.1978 6.2032 4.6659 19 6 6.8349 4.7500 1.1927 20 6 5.8244 4.7620 0.2594 21 6 5.1271 3.5987 -0.0339 22 9 4.1368 3.6221 -0.9527 23 6 3.3038 1.1685 0.3002 24 1 -1.0500 -0.0009 -0.0007 25 1 2.7673 -2.0780 -0.5240 26 1 5.2247 -2.0757 -0.5346 27 1 6.4629 -0.0196 -0.0054 28 1 6.7039 1.4535 2.0705 29 1 10.1367 5.8251 1.6071 30 1 7.3733 5.6588 1.4170 31 1 5.5725 5.6816 -0.2477 32 1 2.7669 2.0759 0.5343 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241922564.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:19 Heat of formation + Delta-G solvation = 38.924147 kcal Electronic energy + Delta-G solvation = -18163.193484 eV Core-core repulsion = 15161.619114 eV Total energy + Delta-G solvation = -3001.574371 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.080 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.55547 -39.08160 -37.27520 -34.08831 -33.45596 -31.64459 -30.12203 -29.71472 -28.06615 -25.17518 -23.22356 -22.63730 -21.06902 -20.50189 -18.56981 -17.17354 -16.36439 -15.99870 -15.52387 -15.05413 -14.97689 -14.55412 -14.13580 -13.89166 -13.34677 -12.99745 -12.91287 -12.56542 -12.05800 -12.00013 -11.49335 -11.35450 -11.25454 -11.18793 -10.88011 -10.86497 -10.44528 -10.37721 -9.97469 -9.60716 -9.31238 -8.69994 -8.33265 -7.63520 -7.29376 -6.92157 -4.50270 1.15961 1.54575 2.53371 2.66809 2.82547 3.00326 3.02626 3.06415 3.24257 3.82744 4.22568 4.34218 4.43171 5.13014 5.17335 5.38760 5.45639 5.55146 5.67551 5.78872 5.80872 6.06585 6.20344 6.31293 6.61031 6.65588 6.68667 6.77255 6.79265 6.97639 7.09395 7.18240 7.31936 7.54104 7.60314 7.72182 7.83021 8.03149 8.40485 8.68860 8.72388 10.03073 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.028960 B = 0.004611 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.621275 B = 6071.180502 C = 6550.524467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.004 4.004 4 C -0.108 4.108 5 C -0.122 4.122 6 C -0.097 4.097 7 C -0.016 4.016 8 C -0.063 4.063 9 C -0.184 4.184 10 C 0.102 3.898 11 C -0.456 4.456 12 H 0.082 0.918 13 C 0.075 3.925 14 N -0.791 5.791 15 Si 0.910 3.090 16 H -0.259 1.259 17 H -0.274 1.274 18 H -0.271 1.271 19 C -0.135 4.135 20 C -0.129 4.129 21 C -0.027 4.027 22 F -0.168 7.168 23 C -0.077 4.077 24 H 0.222 0.778 25 H 0.120 0.880 26 H 0.125 0.875 27 H 0.129 0.871 28 H 0.106 0.894 29 H 0.283 0.717 30 H 0.128 0.872 31 H 0.104 0.896 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.786 -6.593 -1.255 9.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.132 4.132 3 C -0.004 4.004 4 C -0.126 4.126 5 C -0.140 4.140 6 C -0.115 4.115 7 C -0.016 4.016 8 C -0.064 4.064 9 C -0.203 4.203 10 C 0.099 3.901 11 C -0.485 4.485 12 H 0.100 0.900 13 C -0.143 4.143 14 N -0.416 5.416 15 Si 0.735 3.265 16 H -0.183 1.183 17 H -0.199 1.199 18 H -0.196 1.196 19 C -0.154 4.154 20 C -0.149 4.149 21 C -0.047 4.047 22 F -0.147 7.147 23 C -0.095 4.095 24 H 0.239 0.761 25 H 0.138 0.862 26 H 0.143 0.857 27 H 0.147 0.853 28 H 0.124 0.876 29 H 0.094 0.906 30 H 0.145 0.855 31 H 0.122 0.878 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.640 -6.417 -1.391 9.338 hybrid contribution 0.253 0.277 0.356 0.517 sum -6.387 -6.140 -1.035 8.920 Atomic orbital electron populations 1.24765 0.95656 1.00270 1.00856 1.20163 0.92088 1.00480 1.00424 1.15863 0.86350 0.94474 1.03736 1.21071 0.94187 0.96707 1.00592 1.20949 0.93668 0.98232 1.01179 1.21433 1.00447 0.91790 0.97786 1.18858 0.92240 0.93500 0.97029 1.18286 0.98412 0.89903 0.99827 1.20927 0.99870 0.97897 1.01650 1.17584 0.91160 0.90104 0.91228 1.19603 1.05280 1.12602 1.11013 0.89975 1.25935 0.97701 0.94133 0.96572 1.69811 1.27575 1.18792 1.25403 0.86218 0.79307 0.79283 0.81739 1.18269 1.19881 1.19587 1.21290 0.96684 0.99069 0.98390 1.20651 0.98074 0.95464 1.00666 1.17267 0.94773 0.94800 0.97865 1.91298 1.60507 1.97347 1.65551 1.21309 0.93395 0.96877 0.97925 0.76113 0.86165 0.85698 0.85309 0.87629 0.90605 0.85457 0.87836 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.44 19.25 29.55 0.57 -1.87 16 2 C -0.13 -2.00 13.23 -38.84 -0.51 -2.51 16 3 C 0.00 -0.07 5.72 -107.05 -0.61 -0.68 16 4 C -0.11 -1.55 9.74 -39.14 -0.38 -1.93 16 5 C -0.12 -1.74 10.02 -39.69 -0.40 -2.14 16 6 C -0.10 -1.63 9.50 -39.18 -0.37 -2.00 16 7 C -0.02 -0.32 5.30 -104.95 -0.56 -0.87 16 8 C -0.06 -1.41 5.47 -104.91 -0.57 -1.99 16 9 C -0.18 -4.27 9.24 -38.55 -0.36 -4.62 16 10 C 0.10 2.56 5.56 -106.86 -0.59 1.96 16 11 C -0.46 -11.33 9.04 -37.78 -0.34 -11.67 16 12 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 13 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 14 N -0.79 -19.29 10.96 55.54 0.61 -18.68 16 15 Si 0.91 17.62 29.59 -169.99 -5.03 12.59 16 16 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 17 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 18 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 19 C -0.13 -3.33 8.68 -38.85 -0.34 -3.67 16 20 C -0.13 -3.00 9.99 -39.64 -0.40 -3.40 16 21 C -0.03 -0.63 7.18 -38.73 -0.28 -0.91 16 22 F -0.17 -3.77 15.86 2.25 0.04 -3.74 16 23 C -0.08 -1.42 8.55 -38.85 -0.33 -1.76 16 24 H 0.22 1.72 7.80 -54.09 -0.42 1.29 16 25 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 26 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 27 H 0.13 2.08 8.04 -52.49 -0.42 1.66 16 28 H 0.11 2.29 8.04 -52.49 -0.42 1.87 16 29 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 30 H 0.13 3.20 6.18 -52.49 -0.32 2.87 16 31 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 32 H 0.13 2.36 7.77 -52.49 -0.41 1.95 16 LS Contribution 297.55 15.07 4.48 4.48 Total: -1.00 -26.83 297.55 -8.28 -35.11 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -2.82 Total: 6.61 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: -5.56 Total: -36.39 kcal Atomic # 7 Polarization: -19.29 SS G_CDS: 0.61 Total: -18.68 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.04 Total: -3.74 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -26.83 -8.28 -35.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241922564.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.038 kcal (2) G-P(sol) polarization free energy of solvation -26.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds