Wall clock time and date at job start Mon Mar 30 2020 01:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86800 * 119.99937 * 2 1 4 4 H 1.48497 * 109.46927 * 240.00366 * 3 2 1 5 5 H 1.48499 * 109.46770 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47055 * 119.99668 * 3 2 1 7 7 C 1.39932 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99906 * 197.54601 * 7 2 1 9 9 C 1.41439 * 120.00119 * 17.55261 * 7 2 1 10 10 C 1.40819 * 120.60299 * 203.76344 * 9 7 2 11 11 N 1.31496 * 120.66739 * 180.28976 * 10 9 7 12 12 C 1.31935 * 122.12222 * 359.71778 * 11 10 9 13 13 C 1.39685 * 121.15358 * 359.97438 * 12 11 10 14 14 C 1.48371 * 120.41530 * 179.97438 * 13 12 11 15 15 C 1.39991 * 119.91346 * 180.02562 * 14 13 12 16 16 C 1.36129 * 120.63346 * 180.02562 * 15 14 13 17 17 C 1.40257 * 120.10244 * 0.02562 * 16 15 14 18 18 N 1.34786 * 132.90376 * 180.02562 * 17 16 15 19 19 N 1.28621 * 110.36482 * 179.97438 * 18 17 16 20 20 N 1.40272 * 109.44760 * 359.97438 * 19 18 17 21 21 H 0.96990 * 126.76977 * 179.97438 * 20 19 18 22 22 C 1.37541 * 106.46093 * 0.02562 * 20 19 18 23 23 C 1.38790 * 119.91011 * 359.75460 * 14 13 12 24 24 C 1.39198 * 119.17303 * 0.02562 * 13 12 11 25 25 H 0.96995 * 120.00185 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.66117 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.41906 * 179.97438 * 12 11 10 28 28 H 1.07999 * 119.67870 * 359.97438 * 15 14 13 29 29 H 1.07995 * 119.94719 * 180.02562 * 16 15 14 30 30 H 1.07996 * 120.20484 * 359.96991 * 23 14 13 31 31 H 1.08001 * 120.95523 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0502 -1.2335 0.2825 9 6 1.3501 -2.4084 -0.3683 10 6 1.8274 -3.6558 0.0779 11 7 1.2202 -4.7694 -0.2689 12 6 0.1467 -4.7735 -1.0358 13 6 -0.4004 -3.5828 -1.5196 14 6 -1.6079 -3.6066 -2.3815 15 6 -2.1471 -2.4069 -2.8609 16 6 -3.2547 -2.4117 -3.6523 17 6 -3.8689 -3.6250 -3.9955 18 7 -4.9484 -3.9276 -4.7438 19 7 -5.1298 -5.2006 -4.7735 20 7 -4.1347 -5.8320 -4.0128 21 1 -4.0339 -6.7854 -3.8654 22 6 -3.3308 -4.8326 -3.5161 23 6 -2.1964 -4.8185 -2.7149 24 6 0.2019 -2.3737 -1.1838 25 1 -0.4850 0.8400 0.0004 26 1 2.7041 -3.6986 0.7072 27 1 -0.3171 -5.7141 -1.2942 28 1 -1.6803 -1.4687 -2.5997 29 1 -3.6612 -1.4797 -4.0163 30 1 -1.7780 -5.7445 -2.3493 31 1 -0.1967 -1.4360 -1.5421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241941341.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:33 Heat of formation + Delta-G solvation = 127.192949 kcal Electronic energy + Delta-G solvation = -18438.194025 eV Core-core repulsion = 15492.659989 eV Total energy + Delta-G solvation = -2945.534036 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.86356 -38.85266 -37.10109 -34.27343 -33.46355 -32.00652 -30.64429 -29.79881 -28.38574 -25.83485 -23.98003 -23.11002 -22.23275 -21.34883 -20.69345 -18.01532 -17.66827 -17.02437 -15.91689 -15.47228 -15.45098 -15.10638 -14.33511 -14.11976 -13.75482 -13.24647 -12.79552 -12.47020 -12.21154 -11.90121 -11.77670 -11.66766 -11.52388 -11.35305 -11.10979 -11.05716 -10.75277 -10.53974 -10.08185 -9.52594 -9.25511 -8.33596 -8.29952 -8.05101 -7.43947 -7.01526 -4.66660 0.51193 1.52622 2.09264 2.52229 2.60495 2.88374 2.94167 2.95618 3.07149 3.73455 3.95356 4.30364 4.45884 4.78719 4.96883 5.07039 5.35539 5.41308 5.47073 5.73536 5.88653 6.00834 6.17562 6.29432 6.40324 6.50387 6.59519 6.85231 6.89059 6.92823 7.02461 7.06629 7.45048 7.64815 7.70866 8.10465 8.21672 8.47933 8.50689 9.41890 9.88744 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.025777 B = 0.005151 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.968887 B = 5434.283017 C = 6442.523649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.447 4.447 8 H 0.085 0.915 9 C 0.059 3.941 10 C -0.010 4.010 11 N -0.469 5.469 12 C -0.020 4.020 13 C -0.104 4.104 14 C 0.057 3.943 15 C -0.120 4.120 16 C -0.038 4.038 17 C -0.034 4.034 18 N -0.216 5.216 19 N -0.026 5.026 20 N -0.505 5.505 21 H 0.444 0.556 22 C 0.103 3.897 23 C -0.144 4.144 24 C -0.107 4.107 25 H 0.287 0.713 26 H 0.129 0.871 27 H 0.123 0.877 28 H 0.145 0.855 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.823 -2.537 -4.528 6.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.104 0.896 9 C 0.055 3.945 10 C -0.172 4.172 11 N -0.176 5.176 12 C -0.178 4.178 13 C -0.106 4.106 14 C 0.052 3.948 15 C -0.141 4.141 16 C -0.060 4.060 17 C -0.158 4.158 18 N -0.096 5.096 19 N -0.006 5.006 20 N -0.229 5.229 21 H 0.290 0.710 22 C -0.019 4.019 23 C -0.166 4.166 24 C -0.133 4.133 25 H 0.098 0.902 26 H 0.146 0.854 27 H 0.140 0.860 28 H 0.163 0.837 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.007 -3.312 -5.129 7.896 hybrid contribution 0.847 0.999 0.507 1.404 sum -4.160 -2.313 -4.623 6.635 Atomic orbital electron populations 1.69749 1.07704 1.30107 1.33689 1.25983 0.94835 1.01728 0.91872 0.86257 0.80164 0.79566 0.80281 1.18566 1.20079 1.18731 1.19567 0.98296 0.90744 1.38991 0.89642 1.18475 0.92119 0.93820 0.90104 1.22614 1.02402 0.87979 1.04166 1.66962 1.07828 1.31985 1.10847 1.21775 0.96906 0.95267 1.03835 1.19365 0.95159 0.95845 1.00232 1.18899 0.92605 0.91555 0.91753 1.21048 0.96030 0.99166 0.97820 1.20077 0.94326 0.95168 0.96446 1.19803 0.96948 0.94711 1.04363 1.74457 1.14250 1.06257 1.14623 1.81470 1.08068 1.00137 1.10972 1.47647 1.23470 1.09485 1.42269 0.70971 1.19264 0.95047 0.88857 0.98712 1.20058 0.95057 0.99339 1.02147 1.21902 0.97463 0.96052 0.97851 0.90196 0.85358 0.86005 0.83727 0.84638 0.84705 0.84593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.01 10.91 55.55 0.61 -17.40 16 2 C 0.08 1.68 5.18 -17.34 -0.09 1.59 16 3 Si 0.91 16.75 29.59 -169.99 -5.03 11.72 16 4 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 5 H -0.28 -4.96 7.11 56.52 0.40 -4.56 16 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 7 C -0.45 -10.58 9.08 -37.73 -0.34 -10.92 16 8 H 0.09 1.92 7.90 -52.49 -0.41 1.51 16 9 C 0.06 1.43 5.59 -106.71 -0.60 0.84 16 10 C -0.01 -0.24 10.96 -16.72 -0.18 -0.43 16 11 N -0.47 -10.80 10.32 -12.28 -0.13 -10.92 16 12 C -0.02 -0.42 10.59 -16.97 -0.18 -0.60 16 13 C -0.10 -2.17 5.88 -104.83 -0.62 -2.78 16 14 C 0.06 1.01 5.88 -104.86 -0.62 0.39 16 15 C -0.12 -1.98 9.35 -39.68 -0.37 -2.35 16 16 C -0.04 -0.58 10.04 -39.58 -0.40 -0.97 16 17 C -0.03 -0.55 7.25 -84.91 -0.62 -1.17 16 18 N -0.22 -3.60 12.35 32.11 0.40 -3.20 16 19 N -0.03 -0.39 13.83 60.35 0.83 0.44 16 20 N -0.51 -6.58 7.57 32.34 0.24 -6.33 16 21 H 0.44 3.97 8.96 -182.48 -1.64 2.34 16 22 C 0.10 1.57 7.34 -84.16 -0.62 0.95 16 23 C -0.14 -2.24 9.46 -39.14 -0.37 -2.61 16 24 C -0.11 -2.46 8.16 -38.23 -0.31 -2.78 16 25 H 0.29 5.96 8.30 -40.82 -0.34 5.62 16 26 H 0.13 2.76 8.06 -52.49 -0.42 2.34 16 27 H 0.12 2.21 6.18 -52.49 -0.32 1.88 16 28 H 0.15 2.39 6.22 -52.49 -0.33 2.06 16 29 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 30 H 0.14 1.85 6.19 -52.49 -0.33 1.53 16 31 H 0.14 3.09 4.41 -52.49 -0.23 2.85 16 LS Contribution 274.95 15.07 4.14 4.14 Total: -1.00 -26.83 274.95 -7.48 -34.31 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -3.24 Total: 8.08 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -5.31 Total: -20.84 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 1.96 Total: -37.41 kcal Atomic # 14 Polarization: 16.75 SS G_CDS: -5.03 Total: 11.72 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -26.83 -7.48 -34.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241941341.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.506 kcal (2) G-P(sol) polarization free energy of solvation -26.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds