Wall clock time and date at job start Mon Mar 30 2020 01:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86800 * 119.99937 * 2 1 4 4 H 1.48497 * 109.46927 * 240.00366 * 3 2 1 5 5 H 1.48499 * 109.46770 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47055 * 119.99668 * 3 2 1 7 7 C 1.39932 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99906 * 197.54601 * 7 2 1 9 9 C 1.41439 * 120.00119 * 17.55261 * 7 2 1 10 10 C 1.40819 * 120.60299 * 203.76344 * 9 7 2 11 11 N 1.31496 * 120.66739 * 180.28976 * 10 9 7 12 12 C 1.31935 * 122.12222 * 359.71778 * 11 10 9 13 13 C 1.39685 * 121.15358 * 359.97438 * 12 11 10 14 14 C 1.48371 * 120.41530 * 179.97438 * 13 12 11 15 15 C 1.39991 * 119.91346 * 180.02562 * 14 13 12 16 16 C 1.36129 * 120.63346 * 180.02562 * 15 14 13 17 17 C 1.40257 * 120.10244 * 0.02562 * 16 15 14 18 18 N 1.34786 * 132.90376 * 180.02562 * 17 16 15 19 19 N 1.28621 * 110.36482 * 179.97438 * 18 17 16 20 20 N 1.40272 * 109.44760 * 359.97438 * 19 18 17 21 21 H 0.96990 * 126.76977 * 179.97438 * 20 19 18 22 22 C 1.37541 * 106.46093 * 0.02562 * 20 19 18 23 23 C 1.38790 * 119.91011 * 359.75460 * 14 13 12 24 24 C 1.39198 * 119.17303 * 0.02562 * 13 12 11 25 25 H 0.96995 * 120.00185 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.66117 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.41906 * 179.97438 * 12 11 10 28 28 H 1.07999 * 119.67870 * 359.97438 * 15 14 13 29 29 H 1.07995 * 119.94719 * 180.02562 * 16 15 14 30 30 H 1.07996 * 120.20484 * 359.96991 * 23 14 13 31 31 H 1.08001 * 120.95523 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0502 -1.2335 0.2825 9 6 1.3501 -2.4084 -0.3683 10 6 1.8274 -3.6558 0.0779 11 7 1.2202 -4.7694 -0.2689 12 6 0.1467 -4.7735 -1.0358 13 6 -0.4004 -3.5828 -1.5196 14 6 -1.6079 -3.6066 -2.3815 15 6 -2.1471 -2.4069 -2.8609 16 6 -3.2547 -2.4117 -3.6523 17 6 -3.8689 -3.6250 -3.9955 18 7 -4.9484 -3.9276 -4.7438 19 7 -5.1298 -5.2006 -4.7735 20 7 -4.1347 -5.8320 -4.0128 21 1 -4.0339 -6.7854 -3.8654 22 6 -3.3308 -4.8326 -3.5161 23 6 -2.1964 -4.8185 -2.7149 24 6 0.2019 -2.3737 -1.1838 25 1 -0.4850 0.8400 0.0004 26 1 2.7041 -3.6986 0.7072 27 1 -0.3171 -5.7141 -1.2942 28 1 -1.6803 -1.4687 -2.5997 29 1 -3.6612 -1.4797 -4.0163 30 1 -1.7780 -5.7445 -2.3493 31 1 -0.1967 -1.4360 -1.5421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241941341.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:32 Heat of formation + Delta-G solvation = 111.378179 kcal Electronic energy + Delta-G solvation = -18438.879805 eV Core-core repulsion = 15492.659989 eV Total energy + Delta-G solvation = -2946.219816 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.09089 -40.45767 -38.48297 -35.97079 -34.67561 -33.49214 -32.32422 -31.08642 -29.82259 -27.54456 -25.34186 -24.56354 -23.51939 -22.86727 -22.21000 -19.28435 -19.23485 -18.41381 -17.55134 -17.00340 -16.68600 -16.62695 -15.79379 -15.54612 -15.05056 -14.71377 -14.44407 -14.00062 -13.51543 -13.33982 -13.23299 -13.18805 -13.08400 -12.84789 -12.53123 -12.29357 -12.20648 -11.81914 -11.73813 -11.17907 -10.72178 -10.04075 -9.78435 -9.54338 -8.95399 -8.67411 -6.44409 -0.78167 0.23839 0.68084 0.98748 1.37916 1.41961 1.43748 1.53537 1.58326 2.20687 2.56957 2.83486 3.09150 3.55390 3.67881 3.73064 3.78225 4.04130 4.12297 4.30752 4.45990 4.60805 4.79332 4.84158 4.87831 5.07108 5.14024 5.20052 5.33292 5.44865 5.63744 5.80584 5.91148 6.00510 6.06077 6.47518 6.74495 6.76884 6.88376 7.67689 8.24148 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.025777 B = 0.005151 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.968887 B = 5434.283017 C = 6442.523649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.042 3.958 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.479 4.479 8 H 0.086 0.914 9 C 0.036 3.964 10 C -0.035 4.035 11 N -0.481 5.481 12 C -0.027 4.027 13 C -0.096 4.096 14 C 0.029 3.971 15 C -0.123 4.123 16 C -0.032 4.032 17 C -0.042 4.042 18 N -0.236 5.236 19 N -0.023 5.023 20 N -0.480 5.480 21 H 0.463 0.537 22 C 0.097 3.903 23 C -0.122 4.122 24 C -0.129 4.129 25 H 0.295 0.705 26 H 0.135 0.865 27 H 0.155 0.845 28 H 0.138 0.862 29 H 0.159 0.841 30 H 0.157 0.843 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.795 -2.869 -5.351 7.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.176 4.176 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.508 4.508 8 H 0.104 0.896 9 C 0.031 3.969 10 C -0.195 4.195 11 N -0.188 5.188 12 C -0.185 4.185 13 C -0.098 4.098 14 C 0.025 3.975 15 C -0.144 4.144 16 C -0.054 4.054 17 C -0.167 4.167 18 N -0.115 5.115 19 N -0.004 5.004 20 N -0.207 5.207 21 H 0.314 0.686 22 C -0.025 4.025 23 C -0.144 4.144 24 C -0.155 4.155 25 H 0.106 0.894 26 H 0.152 0.848 27 H 0.172 0.828 28 H 0.156 0.844 29 H 0.176 0.824 30 H 0.174 0.826 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.981 -3.683 -5.947 9.204 hybrid contribution 0.981 0.943 0.673 1.518 sum -5.000 -2.740 -5.274 7.767 Atomic orbital electron populations 1.69783 1.08865 1.31352 1.33739 1.26725 0.95514 1.04384 0.90933 0.85230 0.78857 0.75522 0.80121 1.18436 1.19111 1.18492 1.19825 0.98656 0.91734 1.40590 0.89596 1.18787 0.92963 0.94389 0.90730 1.22746 1.03278 0.88179 1.05304 1.66980 1.08606 1.31822 1.11442 1.22340 0.96395 0.96728 1.03023 1.19572 0.95656 0.95008 0.99552 1.18781 0.92548 0.93034 0.93161 1.20984 0.96537 0.98619 0.98289 1.20225 0.93537 0.96037 0.95622 1.20092 0.96945 0.95491 1.04176 1.74491 1.14759 1.06737 1.15489 1.81426 1.08270 1.00001 1.10720 1.47633 1.22065 1.10275 1.40710 0.68637 1.19227 0.95202 0.89170 0.98910 1.20132 0.94332 0.99265 1.00711 1.21971 0.97901 0.96915 0.98679 0.89418 0.84796 0.82780 0.84424 0.82359 0.82587 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.62 10.91 21.82 0.24 -37.38 16 2 C 0.04 1.87 5.18 85.25 0.44 2.32 16 3 Si 0.98 34.23 29.59 68.60 2.03 36.26 16 4 H -0.26 -8.94 7.11 99.48 0.71 -8.24 16 5 H -0.27 -8.81 7.11 99.48 0.71 -8.11 16 6 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 7 C -0.48 -23.37 9.08 23.47 0.21 -23.15 16 8 H 0.09 4.00 7.90 -2.91 -0.02 3.98 16 9 C 0.04 1.78 5.59 -21.21 -0.12 1.66 16 10 C -0.03 -1.68 10.96 85.37 0.94 -0.74 16 11 N -0.48 -22.20 10.32 -192.76 -1.99 -24.19 16 12 C -0.03 -1.10 10.59 85.03 0.90 -0.20 16 13 C -0.10 -3.98 5.88 -20.00 -0.12 -4.10 16 14 C 0.03 1.01 5.88 -20.02 -0.12 0.90 16 15 C -0.12 -3.98 9.35 22.20 0.21 -3.77 16 16 C -0.03 -0.93 10.04 22.27 0.22 -0.70 16 17 C -0.04 -1.29 7.25 39.77 0.29 -1.00 16 18 N -0.24 -7.29 12.35 -52.32 -0.65 -7.94 16 19 N -0.02 -0.64 13.83 37.02 0.51 -0.13 16 20 N -0.48 -10.90 7.57 -51.60 -0.39 -11.29 16 21 H 0.46 6.53 8.96 -213.22 -1.91 4.62 16 22 C 0.10 2.69 7.34 38.99 0.29 2.98 16 23 C -0.12 -3.49 9.46 22.56 0.21 -3.28 16 24 C -0.13 -6.06 8.16 23.15 0.19 -5.87 16 25 H 0.29 12.27 8.30 -92.71 -0.77 11.50 16 26 H 0.13 6.01 8.06 -2.91 -0.02 5.99 16 27 H 0.16 5.19 6.18 -2.91 -0.02 5.17 16 28 H 0.14 4.60 6.22 -2.91 -0.02 4.58 16 29 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 30 H 0.16 3.71 6.19 -2.91 -0.02 3.69 16 31 H 0.13 6.20 4.41 -2.91 -0.01 6.19 16 Total: -1.00 -57.42 274.95 2.60 -54.82 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: -0.70 Total: 24.82 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 3.54 Total: -34.97 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -2.28 Total: -80.93 kcal Atomic # 14 Polarization: 34.23 SS G_CDS: 2.03 Total: 36.26 kcal Total: -57.42 2.60 -54.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241941341.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.197 kcal (2) G-P(sol) polarization free energy of solvation -57.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds