Wall clock time and date at job start Mon Mar 30 2020 01:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30690 * 1 3 3 Si 1.86798 * 120.00045 * 2 1 4 4 H 1.48499 * 109.47258 * 239.99670 * 3 2 1 5 5 H 1.48503 * 109.47309 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47001 * 119.99641 * 3 2 1 7 7 C 1.40173 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00409 * 164.38561 * 7 2 1 9 9 C 1.40886 * 119.99606 * 344.37895 * 7 2 1 10 10 C 1.41129 * 121.11337 * 334.54721 * 9 7 2 11 11 C 1.36451 * 119.11275 * 180.02562 * 10 9 7 12 12 N 1.32237 * 121.52569 * 0.02562 * 11 10 9 13 13 C 1.31654 * 122.50805 * 359.67478 * 12 11 10 14 14 C 1.39379 * 120.65258 * 0.59315 * 13 12 11 15 15 C 1.47734 * 120.78958 * 179.72286 * 14 13 12 16 16 C 1.40329 * 119.88133 * 129.97356 * 15 14 13 17 17 C 1.36128 * 120.54825 * 180.24758 * 16 15 14 18 18 C 1.39974 * 119.98729 * 359.47854 * 17 16 15 19 19 N 1.34738 * 134.58476 * 180.27631 * 18 17 16 20 20 N 1.28636 * 109.29750 * 180.02562 * 19 18 17 21 21 N 1.28811 * 111.79947 * 0.02562 * 20 19 18 22 22 H 0.97001 * 125.94684 * 180.02562 * 21 20 19 23 23 C 1.37372 * 108.11426 * 359.97438 * 21 20 19 24 24 C 1.38590 * 134.89477 * 180.02562 * 23 21 20 25 25 H 0.96998 * 120.00044 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.44605 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.24292 * 179.97438 * 11 10 9 28 28 H 1.07999 * 119.67466 * 180.29210 * 13 12 11 29 29 H 1.07998 * 119.73041 * 0.02562 * 16 15 14 30 30 H 1.08001 * 120.00820 * 179.76311 * 17 16 15 31 31 H 1.08004 * 120.24772 * 359.95800 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0947 1.6964 -1.2124 5 1 1.2759 2.7465 -0.0006 6 1 3.0946 1.6964 1.2126 7 6 2.0078 -1.2139 -0.0005 8 1 3.0579 -1.2311 -0.2523 9 6 1.3423 -2.4116 0.3275 10 6 0.1916 -2.4063 1.1445 11 6 -0.4204 -3.5903 1.4369 12 7 0.0402 -4.7398 0.9731 13 6 1.1044 -4.8161 0.2018 14 6 1.8084 -3.6668 -0.1534 15 6 3.0066 -3.7496 -1.0137 16 6 3.1187 -2.9174 -2.1380 17 6 4.2144 -2.9858 -2.9429 18 6 5.2460 -3.8841 -2.6455 19 7 6.4287 -4.1881 -3.2148 20 7 7.0074 -5.1083 -2.5270 21 7 6.2984 -5.4645 -1.5123 22 1 6.5385 -6.1399 -0.8588 23 6 5.1435 -4.7207 -1.5160 24 6 4.0227 -4.6503 -0.7038 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1994 -1.4776 1.5331 27 1 -1.3009 -3.5887 2.0623 28 1 1.4380 -5.7792 -0.1552 29 1 2.3276 -2.2194 -2.3688 30 1 4.2900 -2.3439 -3.8082 31 1 3.9380 -5.2890 0.1630 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241941574.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:38 Heat of formation + Delta-G solvation = 126.827894 kcal Electronic energy + Delta-G solvation = -18814.078810 eV Core-core repulsion = 15868.528944 eV Total energy + Delta-G solvation = -2945.549866 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.74004 -38.84024 -37.08364 -34.38999 -33.49530 -31.76626 -30.45795 -30.00722 -28.29059 -26.17606 -23.91004 -22.73913 -22.20008 -21.51800 -20.66285 -18.00704 -17.72459 -17.31928 -15.87355 -15.70053 -15.22444 -14.61359 -14.42910 -14.20841 -13.68324 -13.06049 -12.80288 -12.48432 -12.02622 -11.80555 -11.74369 -11.58611 -11.46394 -11.28342 -11.08420 -10.83447 -10.49350 -10.34861 -10.03035 -9.63278 -8.67684 -8.26623 -8.14086 -7.98728 -7.47024 -7.06830 -4.81956 0.96032 1.75637 2.39294 2.65258 2.82099 2.90167 2.90866 2.93484 3.10920 3.68604 4.14291 4.41127 4.46031 5.04445 5.26898 5.38560 5.45907 5.64285 5.70022 5.76021 6.08990 6.17363 6.34452 6.48126 6.62812 6.67849 6.77815 6.85721 7.08716 7.09634 7.16406 7.24309 7.32219 7.63637 7.86835 8.21527 8.46678 8.50066 8.61829 9.43341 9.79435 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.017423 B = 0.007190 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.644522 B = 3893.572246 C = 5196.353519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.079 3.921 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.438 4.438 8 H 0.089 0.911 9 C 0.148 3.852 10 C -0.206 4.206 11 C 0.084 3.916 12 N -0.578 5.578 13 C 0.138 3.862 14 C -0.247 4.247 15 C 0.073 3.927 16 C -0.087 4.087 17 C -0.064 4.064 18 C -0.011 4.011 19 N -0.254 5.254 20 N -0.045 5.045 21 N -0.429 5.429 22 H 0.446 0.554 23 C 0.040 3.960 24 C -0.138 4.138 25 H 0.289 0.711 26 H 0.127 0.873 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.144 0.856 30 H 0.131 0.869 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.746 -2.460 -0.611 5.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.467 4.467 8 H 0.107 0.893 9 C 0.140 3.860 10 C -0.228 4.228 11 C -0.063 4.063 12 N -0.292 5.292 13 C -0.022 4.022 14 C -0.253 4.253 15 C 0.068 3.932 16 C -0.108 4.108 17 C -0.086 4.086 18 C -0.136 4.136 19 N -0.131 5.131 20 N -0.026 5.026 21 N -0.157 5.157 22 H 0.292 0.708 23 C -0.079 4.079 24 C -0.161 4.161 25 H 0.100 0.900 26 H 0.145 0.855 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.162 0.838 30 H 0.149 0.851 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.335 -3.204 -1.204 6.339 hybrid contribution -0.036 1.286 0.862 1.548 sum 5.299 -1.919 -0.343 5.646 Atomic orbital electron populations 1.69720 1.07846 1.30356 1.31644 1.26052 0.94782 1.01797 0.91739 0.86297 0.80272 0.79470 0.80636 1.18315 1.19967 1.18485 1.19645 0.97835 0.90452 1.38816 0.89318 1.17701 0.90094 0.91028 0.87151 1.21920 1.00002 0.98353 1.02488 1.21750 0.98023 0.88803 0.97728 1.67344 1.16128 1.29073 1.16670 1.22124 0.91238 0.95669 0.93135 1.19409 1.01146 0.95330 1.09418 1.18580 0.91712 0.90833 0.92030 1.21194 0.97691 0.98668 0.93275 1.19904 0.91268 0.97051 1.00354 1.19898 0.95921 1.01953 0.95857 1.75150 1.06260 1.09249 1.22442 1.77813 1.18916 1.10243 0.95671 1.44690 1.14393 1.32945 1.23655 0.70814 1.19710 0.91012 0.96944 1.00278 1.20089 0.91476 1.04081 1.00412 0.90015 0.85542 0.86286 0.85997 0.83798 0.85113 0.85648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.44 10.95 55.56 0.61 -16.83 16 2 C 0.08 1.72 5.21 -17.31 -0.09 1.63 16 3 Si 0.91 16.69 29.59 -169.99 -5.03 11.66 16 4 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 5 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 6 H -0.26 -4.84 7.11 56.52 0.40 -4.43 16 7 C -0.44 -10.01 7.26 -37.85 -0.27 -10.28 16 8 H 0.09 1.99 6.69 -52.49 -0.35 1.64 16 9 C 0.15 3.47 5.59 -106.25 -0.59 2.88 16 10 C -0.21 -4.80 8.72 -39.13 -0.34 -5.14 16 11 C 0.08 1.86 11.09 -18.02 -0.20 1.66 16 12 N -0.58 -12.99 10.32 -13.35 -0.14 -13.13 16 13 C 0.14 2.91 10.70 -17.20 -0.18 2.72 16 14 C -0.25 -5.30 5.53 -104.04 -0.57 -5.88 16 15 C 0.07 1.39 5.01 -104.84 -0.53 0.87 16 16 C -0.09 -1.59 7.97 -39.55 -0.32 -1.91 16 17 C -0.06 -1.08 10.03 -39.69 -0.40 -1.48 16 18 C -0.01 -0.20 7.36 -84.92 -0.63 -0.83 16 19 N -0.25 -4.60 12.42 32.11 0.40 -4.20 16 20 N -0.05 -0.74 13.28 60.35 0.80 0.07 16 21 N -0.43 -5.95 7.08 32.31 0.23 -5.72 16 22 H 0.45 4.19 8.96 -190.23 -1.71 2.48 16 23 C 0.04 0.66 7.40 -84.23 -0.62 0.03 16 24 C -0.14 -2.32 9.56 -39.06 -0.37 -2.69 16 25 H 0.29 5.93 8.29 -40.82 -0.34 5.60 16 26 H 0.13 3.00 6.27 -52.49 -0.33 2.67 16 27 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 28 H 0.12 2.24 8.05 -52.49 -0.42 1.82 16 29 H 0.14 2.70 7.32 -52.49 -0.38 2.32 16 30 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 31 H 0.13 1.88 8.05 -52.48 -0.42 1.45 16 LS Contribution 276.11 15.07 4.16 4.16 Total: -1.00 -26.66 276.11 -7.68 -34.34 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -3.59 Total: 8.09 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -5.12 Total: -18.43 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 1.90 Total: -39.82 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.03 Total: 11.66 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -26.66 -7.68 -34.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241941574.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.165 kcal (2) G-P(sol) polarization free energy of solvation -26.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds