Wall clock time and date at job start Mon Mar 30 2020 00:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39794 * 119.99113 * 256.11008 * 3 2 1 5 5 C 1.36584 * 120.00469 * 180.27810 * 4 3 2 6 6 C 1.39864 * 119.99411 * 359.44660 * 5 4 3 7 7 C 1.47660 * 120.00810 * 180.27665 * 6 5 4 8 8 C 1.39273 * 120.25935 * 130.25170 * 7 6 5 9 9 C 1.37926 * 120.12502 * 179.97438 * 8 7 6 10 10 C 1.39236 * 120.66726 * 359.97380 * 9 8 7 11 11 F 1.35100 * 119.74109 * 180.02562 * 10 9 8 12 12 C 1.37603 * 120.52492 * 0.02562 * 10 9 8 13 13 C 1.40741 * 119.84861 * 359.74715 * 12 10 9 14 14 C 1.40817 * 120.32227 * 180.25947 * 13 12 10 15 15 H 1.07993 * 120.00045 * 153.24485 * 14 13 12 16 16 C 1.40052 * 119.99536 * 333.23711 * 14 13 12 17 17 N 1.30783 * 120.00616 * 344.01879 * 16 14 13 18 18 Si 1.86808 * 119.99680 * 164.02015 * 16 14 13 19 19 H 1.48496 * 109.47088 * 60.00283 * 18 16 14 20 20 H 1.48502 * 109.46795 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46862 * 300.00060 * 18 16 14 22 22 C 1.39856 * 119.98144 * 0.52769 * 6 5 4 23 23 C 1.36578 * 119.99469 * 359.74834 * 22 6 5 24 24 H 4.51994 * 14.06891 * 0.02562 * 4 2 1 25 25 H 1.07997 * 120.00120 * 359.97438 * 4 3 2 26 26 H 1.08007 * 120.00371 * 179.71958 * 5 4 3 27 27 H 1.08001 * 119.93520 * 359.95405 * 8 7 6 28 28 H 1.08000 * 119.66718 * 179.97438 * 9 8 7 29 29 H 1.07999 * 120.07794 * 180.02562 * 12 10 9 30 30 H 0.97000 * 120.00221 * 179.97438 * 17 16 14 31 31 H 1.08006 * 120.00282 * 179.77371 * 22 6 5 32 32 H 1.08007 * 119.99868 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3046 0.2916 1.1754 5 6 4.6705 0.2979 1.1743 6 6 5.3701 0.0018 0.0000 7 6 6.8467 0.0025 0.0000 8 6 7.5490 -1.0776 -0.5289 9 6 8.9283 -1.0738 -0.5280 10 6 9.6351 0.0041 -0.0016 11 9 10.9860 -0.0116 -0.0107 12 6 8.9687 1.0853 0.5279 13 6 7.5615 1.1066 0.5337 14 6 6.8694 2.2104 1.0681 15 1 5.8779 2.4494 0.7130 16 6 7.4668 2.9980 2.0601 17 7 8.5088 2.5502 2.7114 18 14 6.7754 4.6883 2.4530 19 1 5.3661 4.5546 2.9015 20 1 7.5814 5.3143 3.5318 21 1 6.8294 5.5399 1.2377 22 6 4.6708 -0.2898 -1.1756 23 6 3.3050 -0.2903 -1.1752 24 1 -1.0500 -0.0005 -0.0001 25 1 2.7644 0.5163 2.0831 26 1 5.2102 0.5271 2.0813 27 1 7.0126 -1.9199 -0.9404 28 1 9.4654 -1.9155 -0.9397 29 1 9.5242 1.9178 0.9339 30 1 8.9228 3.0960 3.3982 31 1 5.2107 -0.5149 -2.0835 32 1 2.7648 -0.5151 -2.0831 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242294649.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:56 Heat of formation + Delta-G solvation = 28.493416 kcal Electronic energy + Delta-G solvation = -18400.738883 eV Core-core repulsion = 15398.712202 eV Total energy + Delta-G solvation = -3002.026681 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.080 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.58481 -40.49851 -38.82182 -35.66816 -34.77362 -32.35577 -32.09207 -31.46907 -29.28023 -27.39878 -24.44569 -23.66603 -22.71307 -21.77656 -19.78466 -19.47039 -17.83401 -17.48578 -16.77495 -16.50906 -16.34965 -16.24797 -15.76274 -15.13451 -14.74069 -14.46159 -14.31676 -14.26948 -13.71259 -13.47672 -13.43087 -12.88887 -12.83246 -12.42214 -12.22056 -12.08698 -11.93851 -11.72149 -11.43470 -11.26795 -11.10578 -9.87428 -9.60669 -9.51088 -8.88342 -8.62172 -6.43268 -0.07566 0.64732 0.80118 0.93353 1.36608 1.46542 1.49361 1.87865 2.14915 2.19193 2.60810 3.15752 3.49322 3.55082 3.77456 4.12381 4.13770 4.17708 4.44950 4.53750 4.61917 4.78977 4.82895 4.99994 5.04863 5.18960 5.20514 5.29771 5.50481 5.61292 5.63469 5.73151 5.78501 5.83815 6.03575 6.16567 6.24816 6.54026 6.67683 6.80198 6.84604 8.21012 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015053 B = 0.007179 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.634490 B = 3899.314599 C = 5535.505849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.188 4.188 3 C -0.028 4.028 4 C -0.101 4.101 5 C -0.109 4.109 6 C 0.007 3.993 7 C -0.197 4.197 8 C -0.043 4.043 9 C -0.275 4.275 10 C 0.094 3.906 11 F -0.167 7.167 12 C -0.222 4.222 13 C 0.123 3.877 14 C -0.462 4.462 15 H 0.086 0.914 16 C 0.040 3.960 17 N -0.813 5.813 18 Si 0.972 3.028 19 H -0.256 1.256 20 H -0.268 1.268 21 H -0.261 1.261 22 C -0.127 4.127 23 C -0.093 4.093 24 H 0.263 0.737 25 H 0.131 0.869 26 H 0.113 0.887 27 H 0.135 0.865 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.292 0.708 31 H 0.137 0.863 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.470 -2.260 -3.365 11.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.188 4.188 3 C -0.028 4.028 4 C -0.119 4.119 5 C -0.128 4.128 6 C 0.007 3.993 7 C -0.199 4.199 8 C -0.061 4.061 9 C -0.295 4.295 10 C 0.075 3.925 11 F -0.146 7.146 12 C -0.243 4.243 13 C 0.120 3.880 14 C -0.490 4.490 15 H 0.104 0.896 16 C -0.178 4.178 17 N -0.437 5.437 18 Si 0.793 3.207 19 H -0.179 1.179 20 H -0.192 1.192 21 H -0.185 1.185 22 C -0.145 4.145 23 C -0.110 4.110 24 H 0.279 0.721 25 H 0.149 0.851 26 H 0.131 0.869 27 H 0.153 0.847 28 H 0.146 0.854 29 H 0.127 0.873 30 H 0.103 0.897 31 H 0.155 0.845 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.231 -2.208 -3.156 10.932 hybrid contribution 0.623 0.803 0.551 1.156 sum -9.608 -1.405 -2.605 10.054 Atomic orbital electron populations 1.25721 0.96352 0.98261 0.97571 1.20425 0.92508 1.02806 1.03064 1.16200 0.87371 1.04678 0.94562 1.20948 0.93581 0.99662 0.97751 1.20998 0.93726 0.99650 0.98388 1.18931 0.91890 0.95182 0.93302 1.18976 0.91738 0.96361 1.12812 1.20765 0.92546 0.96867 0.95921 1.20513 0.94838 0.99956 1.14154 1.18009 0.75392 0.97392 1.01733 1.91327 1.31112 1.97069 1.95106 1.21170 0.95731 0.98921 1.08447 1.17575 0.90449 0.91680 0.88314 1.19688 1.02787 1.09037 1.17471 0.89583 1.26762 0.94122 1.02643 0.94222 1.69831 1.18758 1.38100 1.17056 0.85377 0.79625 0.76840 0.78889 1.17948 1.19201 1.18507 1.21118 0.94011 1.01799 0.97562 1.20992 0.93665 0.98953 0.97428 0.72140 0.85130 0.86927 0.84700 0.85415 0.87265 0.89707 0.84539 0.83801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 19.25 74.32 1.43 -1.92 16 2 C -0.19 -5.24 13.23 30.01 0.40 -4.84 16 3 C -0.03 -0.90 5.74 -21.28 -0.12 -1.02 16 4 C -0.10 -3.48 9.69 22.26 0.22 -3.26 16 5 C -0.11 -4.32 7.94 22.28 0.18 -4.15 16 6 C 0.01 0.28 4.93 -20.00 -0.10 0.18 16 7 C -0.20 -8.92 5.52 -19.62 -0.11 -9.03 16 8 C -0.04 -1.76 9.48 22.44 0.21 -1.55 16 9 C -0.27 -11.78 10.01 22.44 0.22 -11.55 16 10 C 0.09 4.55 7.28 22.36 0.16 4.72 16 11 F -0.17 -7.86 17.26 44.97 0.78 -7.09 16 12 C -0.22 -11.67 8.63 22.73 0.20 -11.47 16 13 C 0.12 6.26 5.55 -21.12 -0.12 6.14 16 14 C -0.46 -23.09 7.08 23.34 0.17 -22.93 16 15 H 0.09 4.21 6.64 -2.91 -0.02 4.20 16 16 C 0.04 1.90 5.16 85.29 0.44 2.34 16 17 N -0.81 -40.91 11.00 21.85 0.24 -40.67 16 18 Si 0.97 36.66 29.59 68.60 2.03 38.69 16 19 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 20 H -0.27 -9.62 7.11 99.48 0.71 -8.92 16 21 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 22 C -0.13 -4.26 9.45 22.27 0.21 -4.05 16 23 C -0.09 -2.80 9.69 22.26 0.22 -2.58 16 24 H 0.26 2.61 7.80 -4.42 -0.03 2.58 16 25 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 26 H 0.11 4.86 7.29 -2.91 -0.02 4.84 16 27 H 0.14 4.56 8.04 -2.91 -0.02 4.54 16 28 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 29 H 0.11 6.05 6.26 -2.91 -0.02 6.04 16 30 H 0.29 13.38 8.30 -92.71 -0.77 12.61 16 31 H 0.14 4.07 8.04 -2.91 -0.02 4.05 16 32 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -57.44 294.34 7.79 -49.65 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 1.14 Total: 24.38 kcal Atomic # 6 Polarization: -68.57 SS G_CDS: 3.60 Total: -64.97 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.24 Total: -40.67 kcal Atomic # 9 Polarization: -7.86 SS G_CDS: 0.78 Total: -7.09 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.69 kcal Total: -57.44 7.79 -49.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242294649.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.145 kcal (2) G-P(sol) polarization free energy of solvation -57.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds