Wall clock time and date at job start Mon Mar 30 2020 00:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39660 * 120.01917 * 321.04493 * 3 2 1 5 5 C 1.37699 * 119.97443 * 180.02562 * 4 3 2 6 6 C 1.39472 * 120.02104 * 0.02562 * 5 4 3 7 7 C 1.48317 * 119.97632 * 179.97438 * 6 5 4 8 8 C 1.39743 * 119.99039 * 359.97438 * 7 6 5 9 9 C 1.38609 * 120.34714 * 180.02562 * 8 7 6 10 10 F 1.35095 * 119.83649 * 179.97438 * 9 8 7 11 11 C 1.37952 * 120.33043 * 359.97438 * 9 8 7 12 12 C 1.40723 * 119.97825 * 0.02562 * 11 9 8 13 13 C 1.41427 * 120.16904 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99608 * 204.47373 * 13 12 11 15 15 C 1.39920 * 120.00601 * 24.47239 * 13 12 11 16 16 N 1.30834 * 119.99803 * 17.86557 * 15 13 12 17 17 Si 1.86795 * 120.00256 * 197.86706 * 15 13 12 18 18 H 1.48503 * 109.46868 * 90.00028 * 17 15 13 19 19 H 1.48499 * 109.47444 * 209.99653 * 17 15 13 20 20 H 1.48498 * 109.47256 * 330.00091 * 17 15 13 21 21 C 1.38790 * 119.99448 * 180.02562 * 7 6 5 22 22 C 1.39470 * 120.04324 * 0.24527 * 6 5 4 23 23 C 1.37693 * 120.02260 * 359.49589 * 22 6 5 24 24 H 4.51949 * 14.05725 * 359.97438 * 4 2 1 25 25 H 1.07994 * 120.00912 * 0.02562 * 4 3 2 26 26 H 1.07991 * 119.98798 * 180.02562 * 5 4 3 27 27 H 1.08002 * 119.82919 * 0.04009 * 8 7 6 28 28 H 1.08005 * 120.00910 * 179.74551 * 11 9 8 29 29 H 0.97003 * 120.00109 * 180.02562 * 16 15 13 30 30 H 1.08003 * 120.16399 * 0.02562 * 21 7 6 31 31 H 1.08004 * 119.98182 * 179.74594 * 22 6 5 32 32 H 1.08000 * 120.00660 * 180.23129 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3052 -0.9394 0.7603 5 6 4.6821 -0.9376 0.7600 6 6 5.3786 0.0029 0.0013 7 6 6.8618 0.0043 0.0022 8 6 7.5607 -0.9363 0.7635 9 6 8.9468 -0.9414 0.7702 10 9 9.6120 -1.8550 1.5104 11 6 9.6504 -0.0182 0.0248 12 6 8.9605 0.9352 -0.7469 13 6 9.6778 1.8839 -1.5122 14 1 9.2174 2.8248 -1.7752 15 6 10.9839 1.6036 -1.9286 16 7 11.4206 0.3702 -1.9269 17 14 12.1041 2.9901 -2.4870 18 1 12.8549 3.5201 -1.3205 19 1 13.0611 2.4762 -3.4995 20 1 11.2870 4.0765 -3.0848 21 6 7.5552 0.9403 -0.7523 22 6 4.6812 0.9456 -0.7538 23 6 3.3043 0.9421 -0.7591 24 1 -1.0500 -0.0003 0.0008 25 1 2.7660 -1.6674 1.3481 26 1 5.2230 -1.6647 1.3475 27 1 7.0181 -1.6632 1.3497 28 1 10.7303 -0.0242 0.0370 29 1 12.3261 0.1759 -2.2152 30 1 7.0174 1.6691 -1.3406 31 1 5.2216 1.6760 -1.3378 32 1 2.7646 1.6699 -1.3468 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242296387.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:34 Heat of formation + Delta-G solvation = 38.927487 kcal Electronic energy + Delta-G solvation = -17905.782771 eV Core-core repulsion = 14904.208545 eV Total energy + Delta-G solvation = -3001.574226 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.080 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.72837 -39.25333 -37.27352 -34.34856 -33.34201 -31.02900 -30.97440 -29.62910 -27.86494 -25.64392 -23.46113 -22.58474 -20.63115 -20.40356 -18.86267 -17.73009 -16.24096 -15.73471 -15.31173 -15.19448 -14.74401 -14.40586 -14.37142 -14.16293 -13.35230 -13.17898 -13.11231 -12.90046 -12.15418 -11.78036 -11.54415 -11.50842 -11.34473 -11.12003 -10.87842 -10.68152 -10.44511 -10.33855 -10.05354 -9.74695 -9.36910 -8.77545 -8.58009 -7.61057 -7.13469 -6.92491 -4.59852 0.92491 1.64140 2.53040 2.57721 2.74534 2.98490 3.02476 3.02875 3.36110 3.80409 4.17455 4.29789 4.49997 5.08886 5.12066 5.19844 5.41637 5.57936 5.68571 5.71240 5.78673 6.08634 6.15977 6.32684 6.49417 6.54373 6.64440 6.67108 6.79077 6.91625 7.06264 7.15646 7.38079 7.52772 7.53143 7.63490 7.75942 8.04025 8.37917 8.64881 8.66583 9.99568 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.025252 B = 0.004470 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.575561 B = 6263.171050 C = 7288.521994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.130 4.130 3 C -0.022 4.022 4 C -0.092 4.092 5 C -0.120 4.120 6 C 0.001 3.999 7 C -0.019 4.019 8 C -0.260 4.260 9 C 0.106 3.894 10 F -0.165 7.165 11 C -0.192 4.192 12 C 0.125 3.875 13 C -0.455 4.455 14 H 0.085 0.915 15 C 0.075 3.925 16 N -0.784 5.784 17 Si 0.913 3.087 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.260 1.260 21 C -0.206 4.206 22 C -0.117 4.117 23 C -0.091 4.091 24 H 0.221 0.779 25 H 0.122 0.878 26 H 0.130 0.870 27 H 0.105 0.895 28 H 0.130 0.870 29 H 0.285 0.715 30 H 0.106 0.894 31 H 0.134 0.866 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.449 0.510 1.725 10.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.130 4.130 3 C -0.022 4.022 4 C -0.110 4.110 5 C -0.138 4.138 6 C 0.001 3.999 7 C -0.020 4.020 8 C -0.280 4.280 9 C 0.087 3.913 10 F -0.145 7.145 11 C -0.213 4.213 12 C 0.123 3.877 13 C -0.484 4.484 14 H 0.103 0.897 15 C -0.145 4.145 16 N -0.408 5.408 17 Si 0.737 3.263 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.184 1.184 21 C -0.225 4.225 22 C -0.135 4.135 23 C -0.108 4.108 24 H 0.238 0.762 25 H 0.140 0.860 26 H 0.148 0.852 27 H 0.123 0.877 28 H 0.148 0.852 29 H 0.096 0.904 30 H 0.124 0.876 31 H 0.152 0.848 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.201 0.328 1.673 10.342 hybrid contribution 0.516 0.268 -0.178 0.608 sum -9.684 0.596 1.495 9.817 Atomic orbital electron populations 1.24766 0.95674 1.00738 1.00965 1.20212 0.92110 1.00352 1.00302 1.15955 0.86227 0.98781 1.01268 1.21040 0.93964 0.97686 0.98280 1.21220 0.93293 0.99360 0.99912 1.19198 0.93215 0.93488 0.93959 1.18066 0.89368 0.96551 0.97987 1.20299 0.91844 1.05539 1.10286 1.17550 0.89884 0.89713 0.94200 1.91343 1.81444 1.65903 1.75763 1.21397 1.00713 0.98989 1.00170 1.17292 0.90493 0.90797 0.89160 1.19616 0.97484 1.02719 1.28582 0.89717 1.25984 0.98588 0.96319 0.93586 1.69810 1.17992 1.19523 1.33517 0.86227 0.79665 0.81323 0.79106 1.19076 1.20156 1.18397 1.21177 0.94117 1.02083 1.05119 1.21262 0.93279 0.99271 0.99685 1.21056 0.93992 0.97637 0.98164 0.76213 0.86021 0.85191 0.87666 0.85182 0.90405 0.87647 0.84810 0.85919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.23 19.25 29.55 0.57 -1.66 16 2 C -0.13 -1.76 13.23 -38.84 -0.51 -2.27 16 3 C -0.02 -0.33 5.73 -106.92 -0.61 -0.94 16 4 C -0.09 -1.33 9.73 -39.25 -0.38 -1.71 16 5 C -0.12 -1.93 9.41 -39.32 -0.37 -2.30 16 6 C 0.00 0.03 5.88 -104.83 -0.62 -0.59 16 7 C -0.02 -0.41 5.87 -104.98 -0.62 -1.03 16 8 C -0.26 -5.70 9.41 -38.88 -0.37 -6.06 16 9 C 0.11 2.53 7.28 -39.55 -0.29 2.24 16 10 F -0.17 -3.83 17.26 2.25 0.04 -3.80 16 11 C -0.19 -4.91 8.66 -38.75 -0.34 -5.25 16 12 C 0.13 3.16 5.57 -106.88 -0.60 2.56 16 13 C -0.46 -11.31 9.05 -37.74 -0.34 -11.65 16 14 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 15 C 0.07 1.78 5.13 -17.35 -0.09 1.69 16 16 N -0.78 -19.48 10.96 55.55 0.61 -18.87 16 17 Si 0.91 17.68 29.59 -169.99 -5.03 12.65 16 18 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 19 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 20 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 21 C -0.21 -4.67 9.16 -38.51 -0.35 -5.02 16 22 C -0.12 -1.91 9.40 -39.32 -0.37 -2.28 16 23 C -0.09 -1.32 9.73 -39.25 -0.38 -1.70 16 24 H 0.22 1.45 7.80 -54.09 -0.42 1.02 16 25 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 26 H 0.13 1.95 6.17 -52.49 -0.32 1.63 16 27 H 0.11 2.05 6.17 -52.49 -0.32 1.73 16 28 H 0.13 3.45 6.16 -52.48 -0.32 3.13 16 29 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 30 H 0.11 2.18 6.17 -52.48 -0.32 1.85 16 31 H 0.13 2.07 6.18 -52.48 -0.32 1.74 16 32 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 292.59 15.07 4.41 4.41 Total: -1.00 -26.73 292.59 -8.07 -34.80 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -2.44 Total: 6.78 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: -5.66 Total: -35.97 kcal Atomic # 7 Polarization: -19.48 SS G_CDS: 0.61 Total: -18.87 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.04 Total: -3.80 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -26.73 -8.07 -34.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242296387.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.731 kcal (2) G-P(sol) polarization free energy of solvation -26.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds