Wall clock time and date at job start Mon Mar 30 2020 01:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86803 * 119.99673 * 2 1 4 4 H 1.48504 * 109.47098 * 240.00083 * 3 2 1 5 5 H 1.48506 * 109.47288 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46966 * 120.00027 * 3 2 1 7 7 C 1.40029 * 120.00438 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00169 * 180.02562 * 7 2 1 9 9 C 1.41433 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.40447 * 119.78044 * 179.97438 * 9 7 2 11 11 C 1.39345 * 118.83310 * 180.02562 * 10 9 7 12 12 C 1.48361 * 120.82060 * 179.97438 * 11 10 9 13 13 C 1.41516 * 119.94990 * 359.73045 * 12 11 10 14 14 C 1.35768 * 119.64380 * 179.67552 * 13 12 11 15 15 C 1.40948 * 119.38466 * 0.60869 * 14 13 12 16 16 N 1.32292 * 133.28615 * 179.70929 * 15 14 13 17 17 N 1.28657 * 109.51868 * 179.97438 * 16 15 14 18 18 C 1.30787 * 110.30546 * 0.02562 * 17 16 15 19 19 N 1.36143 * 107.47831 * 359.97438 * 18 17 16 20 20 C 1.36119 * 119.94747 * 180.02562 * 12 11 10 21 21 C 1.40057 * 118.35383 * 0.02562 * 11 10 9 22 22 C 1.38465 * 119.42254 * 359.97438 * 21 11 10 23 23 N 1.31501 * 121.15285 * 0.02692 * 22 21 11 24 24 H 0.96994 * 120.00546 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.58251 * 0.27836 * 10 9 7 26 26 H 1.08004 * 120.17960 * 359.97438 * 13 12 11 27 27 H 1.07998 * 120.31115 * 180.27257 * 14 13 12 28 28 H 1.07994 * 126.25832 * 180.02562 * 18 17 16 29 29 H 1.08006 * 119.80676 * 0.02562 * 20 12 11 30 30 H 1.08002 * 120.28314 * 179.97438 * 21 11 10 31 31 H 1.08003 * 119.42412 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2763 2.7466 -0.0006 6 1 3.0951 1.6965 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0877 -1.2126 -0.0001 9 6 1.3006 -2.4375 -0.0005 10 6 2.0076 -3.6511 -0.0016 11 6 1.2911 -4.8462 -0.0022 12 6 1.9930 -6.1533 -0.0039 13 6 3.4075 -6.1956 -0.0108 14 6 4.0435 -7.3951 -0.0056 15 6 3.2824 -8.5814 -0.0065 16 7 3.6031 -9.8649 -0.0075 17 7 2.5309 -10.5759 -0.0075 18 6 1.4748 -9.8045 -0.0071 19 7 1.9105 -8.5147 -0.0063 20 6 1.2754 -7.3099 -0.0049 21 6 -0.1081 -4.7830 -0.0021 22 6 -0.7331 -3.5474 -0.0010 23 7 -0.0360 -2.4324 -0.0006 24 1 -0.4851 0.8399 -0.0004 25 1 3.0875 -3.6578 0.0020 26 1 3.9781 -5.2786 -0.0152 27 1 5.1225 -7.4399 -0.0064 28 1 0.4453 -10.1310 -0.0066 29 1 0.1960 -7.2721 -0.0049 30 1 -0.6943 -5.6901 -0.0029 31 1 -1.8120 -3.4986 -0.0006 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245660183.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:10 Heat of formation + Delta-G solvation = 142.224632 kcal Electronic energy + Delta-G solvation = -18305.716435 eV Core-core repulsion = 15360.834222 eV Total energy + Delta-G solvation = -2944.882213 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.40499 -38.99360 -37.58797 -34.10870 -33.82676 -32.44886 -30.33197 -29.68909 -28.68541 -26.07389 -24.18853 -23.71575 -22.40040 -21.44702 -21.03054 -18.23475 -17.46537 -17.04959 -16.38756 -16.11226 -15.19694 -15.17467 -14.67093 -14.16045 -13.98989 -13.60663 -12.90406 -12.80701 -12.19346 -12.14429 -11.97102 -11.70139 -11.35960 -11.24142 -11.19128 -10.91365 -10.61651 -10.51764 -10.07912 -9.99454 -9.42701 -8.45220 -7.90557 -7.80534 -7.69444 -6.59884 -4.74470 0.62591 1.05664 2.39765 2.48671 2.56569 2.95283 2.98655 3.00014 3.06142 3.63007 3.80506 4.12829 4.49441 4.57756 4.58584 4.84309 4.93592 4.98546 5.53682 5.66387 5.68240 5.84291 5.92498 6.01320 6.10534 6.17541 6.40792 6.47269 6.65945 6.87976 6.93011 7.06831 7.25155 7.36530 7.72442 8.00885 8.42816 8.56097 8.67939 9.88561 10.11930 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.042893 B = 0.004141 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.637765 B = 6759.665519 C = 7402.459597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.068 3.932 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.425 4.425 8 H 0.086 0.914 9 C 0.253 3.747 10 C -0.246 4.246 11 C 0.000 4.000 12 C -0.025 4.025 13 C -0.066 4.066 14 C -0.091 4.091 15 C 0.192 3.808 16 N -0.302 5.302 17 N -0.260 5.260 18 C 0.107 3.893 19 N -0.382 5.382 20 C 0.047 3.953 21 C -0.310 4.310 22 C 0.131 3.869 23 N -0.480 5.480 24 H 0.276 0.724 25 H 0.106 0.894 26 H 0.154 0.846 27 H 0.156 0.844 28 H 0.223 0.777 29 H 0.174 0.826 30 H 0.096 0.904 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.321 -6.482 -0.010 6.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.159 4.159 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.104 0.896 9 C 0.129 3.871 10 C -0.269 4.269 11 C -0.007 4.007 12 C -0.029 4.029 13 C -0.091 4.091 14 C -0.113 4.113 15 C -0.057 4.057 16 N -0.149 5.149 17 N -0.100 5.100 18 C -0.176 4.176 19 N -0.060 5.060 20 C -0.076 4.076 21 C -0.333 4.333 22 C -0.035 4.035 23 N -0.193 5.193 24 H 0.087 0.913 25 H 0.124 0.876 26 H 0.171 0.829 27 H 0.174 0.826 28 H 0.240 0.760 29 H 0.191 0.809 30 H 0.114 0.886 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.525 -6.965 -0.011 7.130 hybrid contribution -0.225 0.966 0.002 0.992 sum 1.300 -5.999 -0.009 6.138 Atomic orbital electron populations 1.70099 1.07272 1.28290 1.27456 1.26089 0.94959 1.01265 0.93560 0.86348 0.80112 0.80174 0.80047 1.18789 1.20087 1.18785 1.19658 0.94400 0.89356 1.42163 0.89583 1.18544 0.88331 0.91632 0.88604 1.21842 0.98676 0.92361 1.14011 1.18232 0.93092 0.89241 1.00104 1.18669 0.92949 0.92702 0.98539 1.21468 0.93746 0.98466 0.95396 1.20175 1.00496 0.87442 1.03152 1.22450 0.81660 0.96346 1.05291 1.74887 1.19404 0.97713 1.22878 1.74110 0.94648 1.26748 1.14449 1.26389 1.02201 0.77837 1.11129 1.43748 1.08732 1.07370 1.46183 1.21704 0.99432 0.81339 1.05092 1.21247 0.93018 0.98152 1.20903 1.22466 0.98976 0.88435 0.93619 1.68753 1.07248 1.26812 1.16442 0.91263 0.87584 0.82893 0.82595 0.76034 0.80853 0.88586 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.69 11.46 55.55 0.64 -17.05 16 2 C 0.07 1.59 5.50 -17.35 -0.10 1.50 16 3 Si 0.91 17.24 29.56 -169.99 -5.02 12.22 16 4 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 5 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.43 -10.40 9.14 -37.70 -0.34 -10.75 16 8 H 0.09 1.93 7.85 -52.48 -0.41 1.52 16 9 C 0.25 6.27 6.55 -85.02 -0.56 5.72 16 10 C -0.25 -5.24 9.23 -38.34 -0.35 -5.60 16 11 C 0.00 0.00 5.91 -104.64 -0.62 -0.62 16 12 C -0.03 -0.40 5.84 -105.24 -0.61 -1.01 16 13 C -0.07 -0.93 9.44 -39.22 -0.37 -1.30 16 14 C -0.09 -1.23 10.09 -39.44 -0.40 -1.63 16 15 C 0.19 3.01 7.91 -156.01 -1.23 1.78 16 16 N -0.30 -5.22 12.30 31.17 0.38 -4.84 16 17 N -0.26 -4.22 12.19 29.86 0.36 -3.86 16 18 C 0.11 1.40 12.97 -89.12 -1.16 0.25 16 19 N -0.38 -5.53 2.95 -63.69 -0.19 -5.71 16 20 C 0.05 0.66 10.40 -16.38 -0.17 0.49 16 21 C -0.31 -5.96 9.50 -38.82 -0.37 -6.32 16 22 C 0.13 2.84 11.17 -17.61 -0.20 2.64 16 23 N -0.48 -12.14 7.85 -11.21 -0.09 -12.23 16 24 H 0.28 6.24 8.29 -40.82 -0.34 5.90 16 25 H 0.11 2.01 6.33 -52.49 -0.33 1.67 16 26 H 0.15 1.92 6.33 -52.48 -0.33 1.59 16 27 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.22 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.17 2.06 6.18 -52.48 -0.32 1.73 16 30 H 0.10 1.52 6.29 -52.49 -0.33 1.19 16 31 H 0.12 2.32 8.06 -52.48 -0.42 1.90 16 LS Contribution 276.70 15.07 4.17 4.17 Total: -1.00 -29.47 276.70 -8.36 -37.83 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -2.13 Total: 4.33 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -6.48 Total: -14.85 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 1.11 Total: -43.70 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.02 Total: 12.22 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.47 -8.36 -37.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245660183.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.055 kcal (2) G-P(sol) polarization free energy of solvation -29.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds