Wall clock time and date at job start Mon Mar 30 2020 01:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86795 * 120.00482 * 2 1 4 4 H 1.48497 * 109.47023 * 240.00245 * 3 2 1 5 5 H 1.48500 * 109.47034 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47302 * 120.00162 * 3 2 1 7 7 C 1.39932 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00411 * 197.55274 * 7 2 1 9 9 C 1.41446 * 119.99781 * 17.54595 * 7 2 1 10 10 C 1.40810 * 120.60237 * 203.51727 * 9 7 2 11 11 N 1.31498 * 120.66227 * 179.97438 * 10 9 7 12 12 C 1.31945 * 122.11909 * 359.77084 * 11 10 9 13 13 C 1.39668 * 121.14711 * 0.50102 * 12 11 10 14 14 C 1.48425 * 120.40689 * 179.76810 * 13 12 11 15 15 C 1.41497 * 119.94727 * 179.71709 * 14 13 12 16 16 C 1.35784 * 119.64990 * 179.97438 * 15 14 13 17 17 C 1.40932 * 119.38975 * 0.28252 * 16 15 14 18 18 N 1.32310 * 133.28320 * 180.48323 * 17 16 15 19 19 N 1.28669 * 109.50588 * 179.46604 * 18 17 16 20 20 C 1.30793 * 110.30019 * 359.72068 * 19 18 17 21 21 N 1.36125 * 107.48793 * 0.02562 * 20 19 18 22 22 C 1.36076 * 119.94812 * 359.70100 * 14 13 12 23 23 C 1.39165 * 119.18709 * 359.48902 * 13 12 11 24 24 H 0.96998 * 119.99763 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.67165 * 359.97438 * 10 9 7 26 26 H 1.08002 * 119.42278 * 180.26431 * 12 11 10 27 27 H 1.07999 * 120.17394 * 0.02562 * 15 14 13 28 28 H 1.07997 * 120.30616 * 180.02562 * 16 15 14 29 29 H 1.07995 * 126.25501 * 180.02562 * 20 19 18 30 30 H 1.08001 * 119.80474 * 359.97057 * 22 14 13 31 31 H 1.08001 * 120.95657 * 180.27275 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.0961 1.6962 -1.2125 5 1 1.2775 2.7464 0.0006 6 1 3.0962 1.6962 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0502 -1.2339 0.2815 9 6 1.3500 -2.4081 -0.3704 10 6 1.8302 -3.6562 0.0705 11 7 1.2192 -4.7690 -0.2722 12 6 0.1396 -4.7716 -1.0308 13 6 -0.4035 -3.5808 -1.5183 14 6 -1.6156 -3.6031 -2.3747 15 6 -2.1612 -2.3905 -2.8584 16 6 -3.2699 -2.4180 -3.6418 17 6 -3.8641 -3.6567 -3.9562 18 7 -4.9157 -4.0002 -4.6819 19 7 -5.0450 -5.2803 -4.6719 20 6 -4.0965 -5.8267 -3.9560 21 7 -3.3127 -4.8208 -3.4795 22 6 -2.2002 -4.7898 -2.6937 23 6 0.2022 -2.3726 -1.1865 24 1 -0.4850 0.8401 0.0004 25 1 2.7093 -3.7000 0.6964 26 1 -0.3299 -5.7111 -1.2822 27 1 -1.6978 -1.4481 -2.6064 28 1 -3.6950 -1.4989 -4.0171 29 1 -3.9601 -6.8827 -3.7758 30 1 -1.7792 -5.7125 -2.3224 31 1 -0.1963 -1.4347 -1.5441 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245661707.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:07 Heat of formation + Delta-G solvation = 129.987348 kcal Electronic energy + Delta-G solvation = -18552.091439 eV Core-core repulsion = 15606.678578 eV Total energy + Delta-G solvation = -2945.412861 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.31136 -39.07904 -37.59381 -34.36268 -33.92267 -32.50367 -30.66753 -29.56463 -28.51642 -25.96446 -24.12263 -23.65964 -22.32836 -21.63963 -20.97221 -17.84254 -17.69951 -17.12478 -16.29671 -15.96990 -15.53299 -15.39889 -14.57047 -14.36085 -14.28820 -13.37013 -12.97751 -12.71442 -12.24482 -12.07429 -11.82143 -11.67529 -11.54183 -11.43019 -11.12245 -11.06305 -10.77701 -10.46800 -10.18447 -9.81869 -9.59598 -8.45888 -8.33874 -8.08957 -7.51036 -7.10136 -4.75371 0.70931 1.14765 2.34197 2.49019 2.60906 2.89311 2.90517 2.97229 3.01484 3.62708 3.67346 4.22143 4.35610 4.58993 4.65881 4.93893 5.01935 5.09031 5.37100 5.61935 5.71405 5.79587 6.02094 6.12697 6.17641 6.22444 6.46238 6.53321 6.71993 6.82028 6.88100 7.03666 7.31432 7.55313 7.60120 8.12945 8.38827 8.41922 8.64582 9.32528 9.80194 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.026102 B = 0.005227 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.470813 B = 5355.055942 C = 6350.193893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.444 4.444 8 H 0.087 0.913 9 C 0.062 3.938 10 C -0.010 4.010 11 N -0.465 5.465 12 C -0.027 4.027 13 C -0.092 4.092 14 C -0.013 4.013 15 C -0.065 4.065 16 C -0.092 4.092 17 C 0.192 3.808 18 N -0.303 5.303 19 N -0.261 5.261 20 C 0.105 3.895 21 N -0.380 5.380 22 C 0.036 3.964 23 C -0.111 4.111 24 H 0.288 0.712 25 H 0.130 0.870 26 H 0.120 0.880 27 H 0.155 0.845 28 H 0.155 0.845 29 H 0.223 0.777 30 H 0.173 0.827 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.023 -1.796 -3.265 4.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.145 4.145 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.473 4.473 8 H 0.105 0.895 9 C 0.057 3.943 10 C -0.172 4.172 11 N -0.172 5.172 12 C -0.185 4.185 13 C -0.095 4.095 14 C -0.017 4.017 15 C -0.089 4.089 16 C -0.113 4.113 17 C -0.057 4.057 18 N -0.150 5.150 19 N -0.101 5.101 20 C -0.178 4.178 21 N -0.058 5.058 22 C -0.086 4.086 23 C -0.136 4.136 24 H 0.099 0.901 25 H 0.148 0.852 26 H 0.138 0.862 27 H 0.173 0.827 28 H 0.173 0.827 29 H 0.239 0.761 30 H 0.190 0.810 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.275 -2.448 -3.926 5.669 hybrid contribution 1.100 1.343 0.667 1.860 sum -2.175 -1.105 -3.259 4.071 Atomic orbital electron populations 1.69745 1.07755 1.30207 1.33468 1.25999 0.94852 1.01828 0.91775 0.86237 0.80175 0.79419 0.80362 1.18509 1.20033 1.18655 1.19596 0.98345 0.90722 1.38675 0.89521 1.18465 0.92002 0.93849 0.89955 1.22620 1.02409 0.87901 1.04242 1.66951 1.07527 1.32015 1.10690 1.21671 0.97245 0.94918 1.04680 1.19119 0.94338 0.96090 0.99959 1.18584 0.95494 0.91035 0.96609 1.21521 0.94069 0.99468 0.93830 1.20168 0.96389 0.94183 1.00596 1.22436 0.95135 0.88752 0.99397 1.74889 1.15191 1.04810 1.20149 1.74102 1.18974 1.01392 1.15639 1.26352 0.92431 0.96140 1.02847 1.43714 1.20181 1.08773 1.33158 1.21622 0.88255 1.01126 0.97610 1.21819 0.97727 0.95845 0.98254 0.90130 0.85231 0.86213 0.82742 0.82705 0.76103 0.80994 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -17.48 10.92 55.55 0.61 -16.87 16 2 C 0.08 1.63 5.18 -17.34 -0.09 1.54 16 3 Si 0.91 16.32 29.59 -169.99 -5.03 11.29 16 4 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 5 H -0.28 -4.83 7.11 56.52 0.40 -4.43 16 6 H -0.26 -4.68 7.11 56.52 0.40 -4.27 16 7 C -0.44 -10.23 9.08 -37.73 -0.34 -10.57 16 8 H 0.09 1.89 7.91 -52.49 -0.41 1.48 16 9 C 0.06 1.45 5.59 -106.71 -0.60 0.85 16 10 C -0.01 -0.23 10.96 -16.72 -0.18 -0.41 16 11 N -0.47 -10.32 10.32 -12.28 -0.13 -10.44 16 12 C -0.03 -0.55 10.58 -16.97 -0.18 -0.73 16 13 C -0.09 -1.83 5.88 -104.82 -0.62 -2.44 16 14 C -0.01 -0.22 5.84 -105.24 -0.61 -0.83 16 15 C -0.06 -1.01 9.43 -39.22 -0.37 -1.38 16 16 C -0.09 -1.36 10.09 -39.44 -0.40 -1.75 16 17 C 0.19 3.19 7.91 -156.01 -1.23 1.96 16 18 N -0.30 -5.48 12.30 31.16 0.38 -5.10 16 19 N -0.26 -4.42 12.19 29.86 0.36 -4.05 16 20 C 0.10 1.44 12.97 -89.13 -1.16 0.29 16 21 N -0.38 -5.78 2.95 -63.69 -0.19 -5.97 16 22 C 0.04 0.53 10.39 -16.37 -0.17 0.36 16 23 C -0.11 -2.45 8.17 -38.24 -0.31 -2.77 16 24 H 0.29 5.80 8.30 -40.82 -0.34 5.46 16 25 H 0.13 2.70 8.06 -52.49 -0.42 2.28 16 26 H 0.12 2.01 6.16 -52.49 -0.32 1.69 16 27 H 0.16 2.36 6.30 -52.49 -0.33 2.03 16 28 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.22 1.94 8.06 -52.49 -0.42 1.52 16 30 H 0.17 2.11 6.11 -52.49 -0.32 1.79 16 31 H 0.14 2.94 4.44 -52.49 -0.23 2.71 16 LS Contribution 275.06 15.07 4.15 4.15 Total: -1.00 -27.33 275.06 -8.14 -35.47 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -2.02 Total: 7.43 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -6.26 Total: -15.89 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 1.04 Total: -42.44 kcal Atomic # 14 Polarization: 16.32 SS G_CDS: -5.03 Total: 11.29 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.33 -8.14 -35.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245661707.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.455 kcal (2) G-P(sol) polarization free energy of solvation -27.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds