Wall clock time and date at job start Mon Mar 30 2020 00:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33634 * 126.03905 * 2 1 4 4 N 1.31780 * 114.50215 * 180.02562 * 3 2 1 5 5 C 1.29028 * 117.12190 * 359.97438 * 4 3 2 6 6 C 1.50696 * 124.91407 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47170 * 89.97992 * 6 5 4 8 8 O 1.21293 * 119.99922 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99919 * 180.02562 * 7 6 5 10 10 C 1.37103 * 119.99499 * 180.02562 * 9 7 6 11 11 H 1.08003 * 119.99213 * 224.27872 * 10 9 7 12 12 C 1.38945 * 120.00274 * 44.28161 * 10 9 7 13 13 N 1.31415 * 120.00153 * 18.21925 * 12 10 9 14 14 Si 1.86803 * 119.99908 * 198.21199 * 12 10 9 15 15 H 1.48498 * 109.47366 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46722 * 120.00022 * 14 12 10 17 17 H 1.48494 * 109.47478 * 239.99801 * 14 12 10 18 18 C 1.46498 * 120.00228 * 359.97438 * 9 7 6 19 19 C 1.53000 * 117.49755 * 183.23069 * 18 9 7 20 20 C 1.52991 * 117.49878 * 114.60675 * 18 9 7 21 21 S 1.70974 * 110.16887 * 359.73507 * 5 4 3 22 22 H 1.09007 * 109.46820 * 90.00286 * 1 2 3 23 23 H 1.08997 * 109.47065 * 330.00477 * 1 2 3 24 24 H 1.09005 * 109.47323 * 209.99936 * 1 2 3 25 25 H 1.08003 * 122.74939 * 359.97438 * 3 2 1 26 26 H 1.09000 * 109.47184 * 209.98056 * 6 5 4 27 27 H 1.09003 * 109.47220 * 329.98172 * 6 5 4 28 28 H 0.97004 * 119.99710 * 174.93202 * 13 12 10 29 29 H 1.08996 * 115.54896 * 328.93190 * 18 9 7 30 30 H 1.08995 * 117.50450 * 359.97438 * 19 18 9 31 31 H 1.09001 * 117.49482 * 145.02170 * 19 18 9 32 32 H 1.08995 * 117.50053 * 214.97880 * 20 18 9 33 33 H 1.09000 * 117.50066 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0806 0.0000 4 7 3.5844 0.8170 -0.0005 5 6 3.9311 -0.4258 -0.0005 6 6 5.3531 -0.9246 -0.0005 7 6 5.8273 -1.0903 1.4203 8 8 5.0838 -0.8286 2.3422 9 7 7.0779 -1.5283 1.6666 10 6 7.5091 -1.6796 2.9592 11 1 8.4907 -1.3314 3.2452 12 6 6.6834 -2.2807 3.9012 13 7 5.6662 -3.0152 3.5101 14 14 7.0192 -2.0450 5.7236 15 1 8.2139 -1.1807 5.8991 16 1 5.8444 -1.4009 6.3641 17 1 7.2658 -3.3656 6.3564 18 6 7.9761 -1.8439 0.5531 19 6 9.3561 -2.4082 0.8967 20 6 9.2226 -0.9734 0.3825 21 16 2.5436 -1.4248 0.0077 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 0.8900 0.5137 24 1 -0.3634 -0.8900 0.5138 25 1 1.9025 2.0874 -0.0004 26 1 5.4013 -1.8849 -0.5140 27 1 5.9905 -0.2052 -0.5147 28 1 5.1341 -3.4944 4.1645 29 1 7.4922 -2.2127 -0.3512 30 1 9.5959 -2.5443 1.9512 31 1 9.7802 -3.1485 0.2184 32 1 9.5590 -0.7698 -0.6340 33 1 9.3743 -0.1656 1.0985 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292149264.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:14:22 Heat of formation + Delta-G solvation = 47.269389 kcal Electronic energy + Delta-G solvation = -17940.732234 eV Core-core repulsion = 15094.883653 eV Total energy + Delta-G solvation = -2845.848581 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.36698 -38.41176 -36.07716 -33.13687 -32.53950 -31.08606 -29.87987 -26.04213 -24.65620 -23.16509 -21.71127 -21.21183 -19.78686 -18.61063 -17.53456 -16.52880 -16.05701 -14.98362 -14.71957 -14.41516 -14.11416 -13.93651 -13.62852 -13.01661 -12.98283 -12.80544 -12.43244 -12.25965 -11.75852 -11.41085 -11.07710 -10.90488 -10.85611 -10.81129 -10.49646 -10.15848 -9.97729 -9.75060 -9.15922 -8.77961 -8.71607 -8.37535 -7.99025 -7.03364 -6.11455 -3.86395 1.13497 1.78789 2.22079 3.26337 3.30559 3.40352 3.42103 4.09159 4.26767 4.57594 4.76022 4.91209 5.15466 5.28125 5.30434 5.44964 5.53897 5.57400 5.65176 5.76064 5.85236 5.86197 5.99661 6.09428 6.20184 6.23564 6.43873 6.59422 6.75380 6.93337 7.62731 8.21836 8.26942 9.04578 9.14604 9.64717 10.26464 10.97727 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.020178 B = 0.006824 C = 0.005585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.327284 B = 4102.405201 C = 5011.876999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.249 4.249 3 C 0.037 3.963 4 N -0.476 5.476 5 C 0.097 3.903 6 C -0.067 4.067 7 C 0.491 3.509 8 O -0.521 6.521 9 N -0.427 5.427 10 C -0.346 4.346 11 H 0.078 0.922 12 C 0.074 3.926 13 N -0.833 5.833 14 Si 0.911 3.089 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.285 1.285 18 C 0.071 3.929 19 C -0.172 4.172 20 C -0.207 4.207 21 S 0.134 5.866 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.167 0.833 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.263 0.737 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.012 1.698 -9.670 10.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.371 4.371 3 C -0.114 4.114 4 N -0.190 5.190 5 C -0.181 4.181 6 C -0.111 4.111 7 C 0.276 3.724 8 O -0.398 6.398 9 N -0.148 5.148 10 C -0.473 4.473 11 H 0.096 0.904 12 C -0.137 4.137 13 N -0.466 5.466 14 Si 0.739 3.261 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.212 1.212 18 C -0.035 4.035 19 C -0.210 4.210 20 C -0.246 4.246 21 S 0.389 5.611 22 H 0.089 0.911 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.184 0.816 26 H 0.113 0.887 27 H 0.124 0.876 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.358 1.087 -9.098 10.146 hybrid contribution -0.099 0.847 0.903 1.242 sum -4.457 1.933 -8.195 9.527 Atomic orbital electron populations 1.20125 0.87367 1.03016 1.02204 1.25881 1.01253 0.95732 1.14198 1.21551 0.87215 0.99602 1.03076 1.66198 1.17400 1.18802 1.16599 1.26305 1.00061 0.90993 1.00758 1.20394 0.88667 1.01859 1.00193 1.19362 0.83742 0.81324 0.88009 1.90568 1.53304 1.50550 1.45361 1.42694 1.10244 1.58009 1.03856 1.18869 1.03178 1.41741 0.83503 0.90416 1.25230 0.95270 0.93567 0.99598 1.69822 1.17216 1.24860 1.34703 0.86165 0.78367 0.77692 0.83920 1.19564 1.20723 1.21172 1.21726 0.86545 1.02166 0.93049 1.23057 0.99855 0.95253 1.02800 1.23318 1.05064 0.94987 1.01225 1.83875 0.98663 1.11041 1.67503 0.91145 0.90741 0.91414 0.81578 0.88677 0.87615 0.92657 0.87986 0.87466 0.89769 0.89724 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.42 36.01 0.38 -0.38 16 2 C -0.25 -3.91 6.60 -35.92 -0.24 -4.14 16 3 C 0.04 0.64 11.25 -19.19 -0.22 0.42 16 4 N -0.48 -9.65 10.54 -11.87 -0.13 -9.77 16 5 C 0.10 1.95 5.88 -13.46 -0.08 1.87 16 6 C -0.07 -1.33 4.90 -29.04 -0.14 -1.48 16 7 C 0.49 12.51 6.96 -10.99 -0.08 12.43 16 8 O -0.52 -15.56 13.80 5.55 0.08 -15.49 16 9 N -0.43 -10.61 2.83 -107.74 -0.31 -10.92 16 10 C -0.35 -9.42 7.92 -14.93 -0.12 -9.54 16 11 H 0.08 2.06 7.26 -52.48 -0.38 1.68 16 12 C 0.07 2.08 4.38 -17.47 -0.08 2.00 16 13 N -0.83 -24.51 11.74 55.50 0.65 -23.85 16 14 Si 0.91 22.13 29.59 -169.99 -5.03 17.10 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 C 0.07 1.40 5.87 -67.94 -0.40 1.00 16 19 C -0.17 -3.03 9.80 -26.73 -0.26 -3.29 16 20 C -0.21 -3.48 10.36 -26.74 -0.28 -3.76 16 21 S 0.13 2.36 23.18 -107.50 -2.49 -0.13 16 22 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.17 2.29 8.06 -52.48 -0.42 1.87 16 26 H 0.10 1.65 7.57 -51.93 -0.39 1.25 16 27 H 0.11 1.89 8.11 -51.93 -0.42 1.47 16 28 H 0.26 7.44 8.32 -40.82 -0.34 7.10 16 29 H 0.10 1.73 6.96 -51.93 -0.36 1.37 16 30 H 0.11 2.11 6.72 -51.93 -0.35 1.76 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 299.19 15.07 4.51 4.51 Total: -1.00 -33.99 299.19 -8.22 -42.22 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.00 Total: 1.21 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -1.51 Total: -4.88 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.22 Total: -44.55 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.08 Total: -15.49 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.49 Total: -0.13 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.99 -8.22 -42.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292149264.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.485 kcal (2) G-P(sol) polarization free energy of solvation -33.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds