Wall clock time and date at job start Mon Mar 30 2020 01:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34776 * 119.99835 * 2 1 4 4 S 1.71197 * 120.00338 * 359.97438 * 3 2 1 5 5 N 1.34783 * 119.99844 * 179.97438 * 3 2 1 6 6 C 1.46500 * 120.00093 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.47192 * 180.02562 * 6 5 3 8 8 C 1.38328 * 119.96230 * 269.98024 * 7 6 5 9 9 C 1.38281 * 120.13505 * 180.02562 * 8 7 6 10 10 C 1.38120 * 120.06679 * 359.68445 * 9 8 7 11 11 C 1.38852 * 119.93490 * 0.58817 * 10 9 8 12 12 O 1.35752 * 120.07221 * 179.70368 * 11 10 9 13 13 C 1.34829 * 116.99954 * 354.17311 * 12 11 10 14 14 H 1.07998 * 119.99999 * 5.03596 * 13 12 11 15 15 C 1.38656 * 119.99670 * 185.03445 * 13 12 11 16 16 N 1.31550 * 120.00275 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99668 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47063 * 60.00398 * 17 15 13 19 19 H 1.48498 * 109.47240 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47319 * 300.00306 * 17 15 13 21 21 C 1.38073 * 119.96534 * 89.99825 * 7 6 5 22 22 H 1.08997 * 109.47430 * 300.00245 * 1 2 3 23 23 H 1.08995 * 109.46857 * 60.00729 * 1 2 3 24 24 H 1.09004 * 109.46776 * 180.02562 * 1 2 3 25 25 H 0.97005 * 119.99925 * 179.97438 * 2 1 3 26 26 H 0.97004 * 119.99718 * 0.02562 * 5 3 2 27 27 H 1.09002 * 109.46490 * 60.00223 * 6 5 3 28 28 H 1.08992 * 109.46880 * 300.00477 * 6 5 3 29 29 H 1.08001 * 119.93314 * 0.02562 * 8 7 6 30 30 H 1.07993 * 119.96315 * 179.97438 * 9 8 7 31 31 H 1.08001 * 120.03256 * 180.31909 * 10 9 8 32 32 H 0.96999 * 119.99936 * 179.97438 * 16 15 13 33 33 H 1.07996 * 120.03547 * 0.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 16 1.2829 2.6499 -0.0007 5 7 3.4867 1.1672 0.0005 6 6 4.2192 2.4359 0.0000 7 6 5.7008 2.1606 0.0001 8 6 6.3801 2.0353 1.1985 9 6 7.7398 1.7831 1.2028 10 6 8.4225 1.6491 0.0096 11 6 7.7445 1.7800 -1.1950 12 8 8.4139 1.6548 -2.3694 13 6 9.7540 1.5242 -2.2992 14 1 10.2388 1.4407 -1.3377 15 6 10.5097 1.4970 -3.4614 16 7 9.9192 1.5991 -4.6325 17 14 12.3665 1.3168 -3.3641 18 1 12.7049 0.0397 -2.6861 19 1 12.9363 1.3159 -4.7354 20 1 12.9343 2.4520 -2.5933 21 6 6.3789 2.0340 -1.1960 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.9501 -0.8401 0.0004 26 1 3.9717 0.3271 0.0005 27 1 3.9555 3.0080 0.8895 28 1 3.9562 3.0069 -0.8904 29 1 5.8475 2.1346 2.1328 30 1 8.2674 1.6862 2.1401 31 1 9.4834 1.4471 0.0137 32 1 10.4480 1.5805 -5.4455 33 1 5.8481 2.1326 -2.1314 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318781370.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:40 Heat of formation + Delta-G solvation = 13.126675 kcal Electronic energy + Delta-G solvation = -16936.408067 eV Core-core repulsion = 14089.078947 eV Total energy + Delta-G solvation = -2847.329120 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.50606 -38.73322 -36.91307 -35.13890 -32.41489 -31.14249 -29.29790 -27.46159 -25.67136 -24.89693 -23.63093 -21.82707 -21.00656 -18.86521 -17.85996 -17.35047 -16.77199 -15.53783 -15.28958 -15.15321 -14.73553 -14.64934 -14.44452 -13.81305 -13.69982 -13.25772 -12.69793 -12.60596 -12.51179 -11.82053 -11.46748 -11.44515 -11.10523 -10.97475 -10.92433 -10.79189 -10.54648 -9.49946 -9.18944 -8.95598 -8.40124 -7.87140 -7.46872 -7.39360 -6.55391 -4.15401 1.41203 1.66363 2.05277 2.17219 2.70636 3.06072 3.07737 3.10659 3.54355 3.87041 4.40959 4.75511 4.85054 4.99129 5.16354 5.27230 5.43694 5.56492 5.65395 5.73193 5.77166 5.84245 5.97873 6.14957 6.37635 6.46401 6.70969 6.73089 6.90574 7.06977 7.17238 7.22572 7.27920 7.60667 7.88029 8.89508 9.56717 10.62010 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.033998 B = 0.003632 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.373535 B = 7706.993449 C = 8069.074674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.695 5.695 3 C 0.560 3.440 4 S -0.654 6.654 5 N -0.670 5.670 6 C 0.173 3.827 7 C -0.080 4.080 8 C -0.194 4.194 9 C -0.076 4.076 10 C -0.223 4.223 11 C 0.149 3.851 12 O -0.174 6.174 13 C -0.396 4.396 14 H 0.092 0.908 15 C 0.041 3.959 16 N -0.859 5.859 17 Si 0.942 3.058 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.269 1.269 21 C -0.169 4.169 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.398 0.602 26 H 0.400 0.600 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.272 0.728 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.104 -5.868 9.497 15.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.326 5.326 3 C 0.199 3.801 4 S -0.531 6.531 5 N -0.298 5.298 6 C 0.051 3.949 7 C -0.081 4.081 8 C -0.213 4.213 9 C -0.094 4.094 10 C -0.243 4.243 11 C 0.095 3.905 12 O -0.077 6.077 13 C -0.472 4.472 14 H 0.110 0.890 15 C -0.164 4.164 16 N -0.493 5.493 17 Si 0.766 3.234 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.194 1.194 21 C -0.189 4.189 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.234 0.766 26 H 0.237 0.763 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.146 0.854 32 H 0.082 0.918 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.728 -4.775 8.983 14.785 hybrid contribution 1.951 -1.664 0.077 2.566 sum -8.778 -6.439 9.060 14.163 Atomic orbital electron populations 1.21835 0.76042 1.02384 1.04651 1.44787 1.09056 1.05578 1.73172 1.22228 0.85213 0.92093 0.80557 1.93456 1.68709 1.16288 1.74607 1.45302 1.02789 1.11823 1.69895 1.20570 0.86510 0.82930 1.04915 1.19261 0.93220 1.02422 0.93214 1.20502 0.94664 1.09887 0.96289 1.20757 0.93953 0.97710 0.96986 1.21265 1.01198 1.09741 0.92070 1.19316 0.91722 0.92739 0.86696 1.83981 1.21296 1.77789 1.24678 1.21288 0.78611 1.52529 0.94755 0.89034 1.25307 1.00553 0.96374 0.94150 1.70020 1.36604 1.45166 0.97554 0.85771 0.80348 0.79240 0.78036 1.19465 1.20179 1.19391 1.20112 0.92402 1.08869 0.97479 0.90450 0.90382 0.90397 0.76638 0.76333 0.88932 0.88869 0.87395 0.87170 0.85377 0.91795 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.16 59.85 0.61 1.29 16 2 N -0.70 -5.89 5.72 -68.83 -0.39 -6.29 16 3 C 0.56 6.92 7.98 -86.91 -0.69 6.22 16 4 S -0.65 -10.92 27.77 -107.50 -2.99 -13.91 16 5 N -0.67 -7.87 5.55 -63.21 -0.35 -8.22 16 6 C 0.17 2.40 5.25 -5.19 -0.03 2.37 16 7 C -0.08 -1.28 5.25 -104.65 -0.55 -1.83 16 8 C -0.19 -3.00 9.70 -39.53 -0.38 -3.39 16 9 C -0.08 -1.27 10.04 -39.61 -0.40 -1.66 16 10 C -0.22 -4.50 9.17 -39.40 -0.36 -4.86 16 11 C 0.15 3.38 6.65 -39.11 -0.26 3.12 16 12 O -0.17 -4.76 9.76 0.05 0.00 -4.76 16 13 C -0.40 -10.64 9.49 30.89 0.29 -10.34 16 14 H 0.09 2.25 5.21 -52.49 -0.27 1.98 16 15 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 16 N -0.86 -24.52 13.67 55.48 0.76 -23.76 16 17 Si 0.94 19.81 29.55 -169.99 -5.02 14.79 16 18 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 19 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 C -0.17 -3.27 9.65 -39.39 -0.38 -3.65 16 22 H 0.08 0.64 7.99 -51.93 -0.42 0.22 16 23 H 0.08 0.67 7.99 -51.93 -0.41 0.26 16 24 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.40 2.22 8.84 -40.82 -0.36 1.85 16 26 H 0.40 3.97 8.48 -40.82 -0.35 3.63 16 27 H 0.09 1.29 7.93 -51.93 -0.41 0.88 16 28 H 0.09 1.41 7.93 -51.93 -0.41 1.00 16 29 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 31 H 0.13 2.60 5.64 -52.49 -0.30 2.30 16 32 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 302.80 15.07 4.56 4.56 Total: -1.00 -32.56 302.80 -9.43 -42.00 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -3.76 Total: 7.32 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -2.25 Total: -11.73 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.01 Total: -38.26 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: 0.00 Total: -4.76 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 16 Polarization: -10.92 SS G_CDS: -2.99 Total: -13.91 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.56 -9.43 -42.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318781370.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.123 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds