Wall clock time and date at job start Mon Mar 30 2020 00:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99590 * 2 1 4 4 N 1.46509 * 109.46974 * 125.00121 * 3 2 1 5 5 C 1.46497 * 119.99867 * 262.22438 * 4 3 2 6 6 C 1.50701 * 109.47152 * 269.99726 * 5 4 3 7 7 H 1.07998 * 119.99894 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00022 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99967 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99972 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47344 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47461 * 119.99628 * 10 8 6 13 13 H 1.48501 * 109.46983 * 239.99450 * 10 8 6 14 14 C 1.34771 * 119.99424 * 82.22126 * 4 3 2 15 15 O 1.21623 * 119.99477 * 182.39710 * 14 4 3 16 16 C 1.47252 * 120.00402 * 2.39919 * 14 4 3 17 17 N 1.30563 * 125.54285 * 171.65176 * 16 14 4 18 18 C 1.30700 * 115.90846 * 180.02562 * 17 16 14 19 19 C 1.50694 * 122.11023 * 179.97438 * 18 17 16 20 20 C 1.34235 * 115.78067 * 0.25066 * 18 17 16 21 21 S 1.71073 * 109.09448 * 359.62755 * 20 18 17 22 22 H 1.08003 * 119.99388 * 179.97438 * 1 2 3 23 23 H 1.08004 * 120.00613 * 359.97438 * 1 2 3 24 24 H 1.07989 * 120.00403 * 180.02562 * 2 1 3 25 25 H 1.09006 * 109.47287 * 5.01041 * 3 2 1 26 26 H 1.08992 * 109.47422 * 245.00237 * 3 2 1 27 27 H 1.09001 * 109.47536 * 30.00015 * 5 4 3 28 28 H 1.09000 * 109.46639 * 150.00118 * 5 4 3 29 29 H 0.97003 * 120.00074 * 180.02562 * 9 8 6 30 30 H 1.09001 * 109.46868 * 90.02358 * 19 18 17 31 31 H 1.08997 * 109.47464 * 210.02417 * 19 18 17 32 32 H 1.09004 * 109.47282 * 330.02831 * 19 18 17 33 33 H 1.07999 * 125.45242 * 179.75236 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.6196 2.0167 2.3713 6 6 3.0581 3.4568 2.3019 7 1 3.5645 3.8253 1.4220 8 6 2.8129 4.3041 3.3617 9 7 2.1957 3.8555 4.4329 10 14 3.3558 6.0893 3.2753 11 1 4.0228 6.3414 1.9727 12 1 2.1703 6.9741 3.4042 13 1 4.3066 6.3715 4.3806 14 6 4.1937 0.7266 1.0316 15 8 4.9482 0.7112 1.9854 16 6 4.5913 0.0839 -0.2322 17 7 5.7759 -0.3951 -0.5002 18 6 5.9222 -0.9267 -1.6853 19 6 7.2302 -1.5204 -2.1409 20 6 4.8355 -0.9052 -2.4730 21 16 3.5464 -0.1630 -1.6281 22 1 -0.5399 -0.9354 -0.0004 23 1 -0.5401 0.9353 0.0004 24 1 1.8500 -0.9352 -0.0004 25 1 1.3584 2.1317 0.0898 26 1 2.6212 1.4028 -0.9313 27 1 1.5380 1.9721 2.4990 28 1 3.1056 1.5293 3.2165 29 1 2.0228 4.4517 5.1784 30 1 7.2611 -2.5774 -1.8764 31 1 7.3208 -1.4136 -3.2218 32 1 8.0548 -0.9998 -1.6540 33 1 4.7829 -1.2959 -3.4785 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324090896.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:13 Heat of formation + Delta-G solvation = 40.658121 kcal Electronic energy + Delta-G solvation = -17791.162684 eV Core-core repulsion = 14945.027417 eV Total energy + Delta-G solvation = -2846.135267 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.94857 -38.82568 -35.88762 -33.38669 -32.22819 -31.77970 -28.33698 -27.70637 -26.15763 -25.16237 -22.66700 -20.45343 -19.56401 -19.10231 -17.71369 -16.60047 -16.51624 -15.81737 -15.19266 -14.88385 -14.69384 -14.14696 -13.93145 -13.27802 -13.09576 -12.76238 -12.58001 -12.54961 -12.27022 -12.04780 -11.42126 -11.18773 -11.00392 -10.75250 -10.62168 -10.27231 -9.90253 -9.73780 -9.63300 -9.24366 -9.12898 -8.49281 -8.44266 -7.89083 -6.09748 -4.15140 0.46350 1.36003 1.84006 2.30271 2.61566 3.28206 3.35799 3.37824 3.46340 3.75096 4.38235 4.50824 4.86033 5.04509 5.10954 5.21591 5.24129 5.27077 5.37123 5.54884 5.61521 5.84463 5.85799 5.98655 6.22453 6.63887 6.73249 6.89429 7.29432 7.37662 7.75184 7.86634 8.12364 8.15721 8.72366 8.91185 9.50286 10.98433 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021934 B = 0.006110 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.233775 B = 4581.793980 C = 5321.354176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.183 4.183 3 C 0.125 3.875 4 N -0.580 5.580 5 C 0.249 3.751 6 C -0.532 4.532 7 H 0.060 0.940 8 C 0.064 3.936 9 N -0.892 5.892 10 Si 0.899 3.101 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.581 3.419 15 O -0.497 6.497 16 C 0.014 3.986 17 N -0.406 5.406 18 C 0.052 3.948 19 C -0.079 4.079 20 C -0.317 4.317 21 S 0.204 5.796 22 H 0.099 0.901 23 H 0.103 0.897 24 H 0.111 0.889 25 H 0.109 0.891 26 H 0.075 0.925 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.264 0.736 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.357 -9.415 -15.474 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.203 4.203 3 C -0.001 4.001 4 N -0.312 5.312 5 C 0.131 3.869 6 C -0.571 4.571 7 H 0.078 0.922 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.727 3.273 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.362 3.638 15 O -0.371 6.371 16 C -0.263 4.263 17 N -0.123 5.123 18 C -0.085 4.085 19 C -0.138 4.138 20 C -0.457 4.457 21 S 0.462 5.538 22 H 0.117 0.883 23 H 0.121 0.879 24 H 0.128 0.872 25 H 0.127 0.873 26 H 0.092 0.908 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.624 -9.082 -14.575 17.250 hybrid contribution 1.091 0.523 -0.515 1.315 sum -0.533 -8.560 -15.090 17.357 Atomic orbital electron populations 1.23848 0.95404 1.02161 0.98907 1.23411 0.96777 0.98604 1.01491 1.20941 0.93410 0.96847 0.88923 1.48131 1.13658 1.52520 1.16878 1.19454 0.96410 0.91553 0.79515 1.21456 1.38596 0.94310 1.02714 0.92182 1.24918 0.94926 0.99068 0.94975 1.69939 1.41303 1.35936 1.05887 0.86421 0.78367 0.84265 0.78272 1.19741 1.20892 1.20779 1.16739 0.82819 0.79510 0.84692 1.90831 1.51031 1.58346 1.36885 1.28002 0.92336 1.06375 0.99633 1.66477 1.19716 1.08773 1.17309 1.20285 0.97811 1.01478 0.88928 1.20373 0.92209 1.00489 1.00778 1.27090 1.00737 1.10533 1.07331 1.84717 1.13042 1.48823 1.07257 0.88295 0.87904 0.87165 0.87273 0.90793 0.94151 0.93221 0.92631 0.90881 0.91015 0.90586 0.80939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 14.32 29.01 0.42 -1.47 16 2 C -0.18 -2.45 7.94 -36.03 -0.29 -2.74 16 3 C 0.12 1.98 5.43 -5.19 -0.03 1.96 16 4 N -0.58 -12.34 2.46 -177.77 -0.44 -12.78 16 5 C 0.25 6.35 5.14 -5.19 -0.03 6.33 16 6 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 7 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 10 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.58 13.10 7.59 -12.60 -0.10 13.01 16 15 O -0.50 -13.41 16.64 5.26 0.09 -13.32 16 16 C 0.01 0.26 7.23 -14.43 -0.10 0.15 16 17 N -0.41 -7.65 10.57 -7.69 -0.08 -7.74 16 18 C 0.05 0.76 6.68 -84.49 -0.56 0.20 16 19 C -0.08 -0.86 10.28 36.00 0.37 -0.49 16 20 C -0.32 -3.88 10.82 29.32 0.32 -3.56 16 21 S 0.20 2.67 15.79 -107.50 -1.70 0.98 16 22 H 0.10 0.95 8.06 -52.48 -0.42 0.52 16 23 H 0.10 1.11 7.84 -52.48 -0.41 0.70 16 24 H 0.11 1.46 6.92 -52.49 -0.36 1.10 16 25 H 0.11 1.70 7.67 -51.93 -0.40 1.30 16 26 H 0.08 1.08 4.49 -22.55 -0.10 0.97 16 27 H 0.04 1.02 8.07 -51.93 -0.42 0.60 16 28 H 0.05 1.43 7.39 -51.93 -0.38 1.05 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 298.90 15.07 4.50 4.50 Total: -1.00 -33.26 298.90 -6.07 -39.32 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -3.73 Total: -2.26 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -0.42 Total: -0.04 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.22 Total: -45.74 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -1.70 Total: 0.98 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.26 -6.07 -39.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324090896.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.980 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds